Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010643

Physical Location & Seq

Genomic Coordinates Reverse (-)

87507375 .. 87508274

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGACTCCAACGCTGGTCTGGTGGCCGGCTCTCACAACCGGAATGAGCTCGTCGTCATCCGCCGCGAGTGCGACGAAGATTCTGCTCCGAAAGGGTTGAAGGGGCAGATTTGCCAGATTTGTGGAGACGACGTGGGGCTCAACGCGGACGGGGAATTGTTCGTCGCCTGTAACGAGTGTGCCTTCCCAGTTTGCCGGACTTGCTACGAGTATGAGCGCCGAGAAGGAAGCCAAGTATGTCCTCAGTGCAAGACCCGATTCAAACGTCTCAAAGGGTGTGCCGGTATTTTGTTGGGTAAAGCTTCTGCTCAATTGGTATGGCTATATTTTCTGGGTAAAAAGATGAAGAATAGAATTGGTTCTTGGTATTTTATGAGCTTCTGCTCAATCTTTGAGCAAAAACTTGGTTATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

138

Amino Acids

15.41

Weight (kDa)

8.49

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	31 - 96	5.2e-37	Zinc-binding RING-finger
zf-RING_4	PF14570	38 - 88	4.2e-07	RING/Ubox like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17420
fragaria_vesca	FvH4_1g00670
malus_domestica	MD02G1005600.v1.1 MD15G1150200.v1.1 MD15G1150300.v1.1
prunus_persica	Prupe.7G265400_v2.0.a1
pyrus_communis	pycom02g00450 pycom15g13420 pycom15g13430 pycom15g13440
rosa_chinensis	RchiOBHm_Chr2g0085301 RchiOBHm_Chr2g0175181
rosa_laevigata	RLG00000015676
rosa_multiflora	Rmu_sc0008510.1_g000012
rosa_rugosa	Rorug01G0459400
rosa_samantha	Rh2AG007700 Rh2BG008400 Rh2CG009100 Rh2DG009600
rosa_wichuraiana	Rw2G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	66, 146
AciI	CCGC	3 cut(s)	61, 64, 146
AcoI	YGGCCR	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	100, 262
AjiI	CACGTC	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	346, 378
AluBI	AGCT	3 cut(s)	49, 302, 378
AluI	AGCT	3 cut(s)	49, 302, 378
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	2 cut(s)	120, 272
AoxI	GGCC	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	358
AspLEI	GCGC	1 cut(s)	219
BanII	GRGCYC	2 cut(s)	51, 141
Bbv12I	GWGCWC	1 cut(s)	51
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BcoDI	GTCTC	2 cut(s)	120, 272
BfoI	RGCGCY	1 cut(s)	220
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BmgBI	CACGTC	1 cut(s)	133
BmrI	ACTGGG	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse118I	RCCGGY	2 cut(s)	26, 281
Bse1I	ACTGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	188
Bsh1236I	CGCG	2 cut(s)	66, 146
BshFI	GGCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	4 cut(s)	27, 40, 196, 282
BsmAI	GTCTC	2 cut(s)	120, 272
BsmBI	CGTCTC	2 cut(s)	120, 272
BsnI	GGCC	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	51, 141
BspACI	CCGC	3 cut(s)	61, 64, 146
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	2 cut(s)	66, 146
BsrFI	RCCGGY	2 cut(s)	26, 281
BsrI	ACTGG	1 cut(s)	188
BssAI	RCCGGY	2 cut(s)	26, 281
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	2 cut(s)	66, 146
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstMAI	GTCTC	2 cut(s)	120, 272
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 201
BstUI	CGCG	2 cut(s)	66, 146
BstXI	CCANNNNNNTGG	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	26
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	219
Cfr10I	RCCGGY	2 cut(s)	26, 281
CviJI	RGCY	8 cut(s)	26, 30, 49, 139, 231, 302, 322, 378
CviKI_1	RGCY	8 cut(s)	26, 30, 49, 139, 231, 302, 322, 378
DdeI	CTNAG	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	2 cut(s)	51, 141
Eco53kI	GAGCTC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	49
EcoT38I	GRGCYC	2 cut(s)	51, 141
Esp3I	CGTCTC	2 cut(s)	120, 272
FaiI	YATR	6 cut(s)	213, 238, 319, 325, 374, 411
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	2 cut(s)	51, 141
Fsp4HI	GCNGC	1 cut(s)	64
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	64
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	4 cut(s)	27, 40, 196, 282
HhaI	GCGC	1 cut(s)	219
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	3 cut(s)	5, 80, 258
HpaII	CCGG	4 cut(s)	27, 40, 196, 282
Hpy188I	TCNGA	1 cut(s)	90
Hpy99I	CGWCG	4 cut(s)	56, 77, 134, 167
HpyAV	CCTTC	3 cut(s)	94, 193, 218
HpyCH4IV	ACGT	2 cut(s)	132, 265
HpyCH4V	TGCA	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 201
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	132, 265
HspAI	GCGC	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	9 cut(s)	5, 40, 53, 128, 181, 201, 209, 295, 317
MaeII	ACGT	2 cut(s)	132, 265
MaeIII	GTNAC	1 cut(s)	170
MboII	GAAGA	2 cut(s)	89, 358
MfeI	CAATTG	1 cut(s)	311
MhlI	GDGCHC	2 cut(s)	51, 141
MluCI	AATT	3 cut(s)	155, 311, 354
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	1 cut(s)	252
MroNI	GCCGGC	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	358
MspI	CCGG	4 cut(s)	27, 40, 196, 282
MunI	CAATTG	1 cut(s)	311
MvnI	CGCG	2 cut(s)	66, 146
MwoI	GCNNNNNNNGC	2 cut(s)	69, 201
NaeI	GCCGGC	1 cut(s)	28
NgoMIV	GCCGGC	1 cut(s)	26
NmeAIII	GCCGAG	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdiI	GCCGGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	80, 258
PkrI	GCNGC	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	51
SacI	GAGCTC	1 cut(s)	51
SatI	GCNGC	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	51, 141
SetI	ASST	5 cut(s)	51, 135, 268, 304, 380
Sse9I	AATT	3 cut(s)	155, 311, 354
SsiI	CCGC	3 cut(s)	61, 64, 146
SstI	GAGCTC	1 cut(s)	51
TaiI	ACGT	2 cut(s)	135, 268
TasI	AATT	3 cut(s)	155, 311, 354
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	80, 258
TscAI	CASTG	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.