RchiOBHm_Chr1g0316111

Folate-sensitive fragile site protein Fra10Ac1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014301
Physical Location & Seq
Forward (+)
3376582 .. 3382716
6135 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
ATGGCCTCGTTTGCGTCGTTAAAATCTGCAATCTTCGACAGAGAAGAGCGAAAACAGCAGTACCAGGATCACATTCGCGGCCTCAACGCTTACGAACGCCATAAAAAGTTCGTCAAAGATTACGTTAGCTATTATGGTAGAGAAGGATCTTCACACGTGAAGTTGCCTGTCAAAACTGATCAAGACACCCTAAGAGAAGGGTACCGGTTTATAAGATCTGAGGAAGATGACATGGACACATCCTGGGAGCAGAGGCTGGTGAAGCGATACTATGACAAGCTGTTTAAAGAATATTGCATAGCTGATATGTCACATTACAAGAGTGGTAAGATTGGTCTGAGGTGGAGGACAGAAAAGGAAGTTGTATCCGGTAAAGGGCAGTTCATATGTGGTAGCAAACATTGCGATCTAAAAGATGGCTTAGCCAGCTACGAGGTGAACTTCTCTTATTATGAAGCTGGAGAAAACAAACAAGCGCTGGTCAAATTGGTAACTTGTGAGAGATGTTCGGAAAAGCTTCATTACAAACGACGGAAAGAGAAGGAACACATGGAAAAAGAAAAGAATGAAGATAAGAGAAGAAAGAGGAACCGGTCAAGGGATAGTGATGACACTGATGATGAGGGAAGCAAGGAGAGGAGAAAAGGGAAAAAGGCTTCACTTTCCACTAGTGAACAGAGAGTCAATGATGAAGATGATGATGAAAACTTTGACGAGTATCTTGAGGGAATGTTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fra10Ac1

Protein Analysis

246

Amino Acids

29.34

Weight (kDa)

8.1

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fra10Ac1 PF09725 59 - 175 1.3e-50 Folate-sensitive fragile site protein Fra10Ac1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15030 AT4G15030 AT4G15030
fragaria_vesca FvH4_7g01110
malus_domestica MD02G1310300.v1.1 MD07G1011200.v1.1
prunus_persica Prupe.2G014400_v2.0.a1
pyrus_communis pycom07g00930
rosa_chinensis RchiOBHm_Chr1g0316111
rosa_laevigata RLG00000030694
rosa_multiflora Rmu_sc0002531.1_g000028
rosa_roxburghii Rroxscaffold_4G00331130
rosa_rugosa Rorug01G0009100
rosa_samantha Rh1AG019100 Rh1BG014100 Rh1CG016700
rosa_wichuraiana Rw1G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 212
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AccII CGCG 1 cut(s) 78
AciI CCGC 1 cut(s) 78
AclWI GGATC 2 cut(s) 75, 154
AcvI CACGTG 1 cut(s) 157
AfaI GTAC 2 cut(s) 62, 203
AfeI AGCGCT 1 cut(s) 477
AfiI CCNNNNNNNGG 2 cut(s) 375, 598
AflIII ACRYGT 1 cut(s) 154
AgeI ACCGGT 2 cut(s) 204, 591
AhlI ACTAGT 1 cut(s) 668
AjnI CCWGG 2 cut(s) 63, 242
AluBI AGCT 6 cut(s) 129, 280, 302, 429, 458, 517
AluI AGCT 6 cut(s) 129, 280, 302, 429, 458, 517
AlwI GGATC 2 cut(s) 75, 154
AlwNI CAGNNNCTG 1 cut(s) 256
Aor51HI AGCGCT 1 cut(s) 477
AoxI GGCC 2 cut(s) 3, 79
AsiGI ACCGGT 2 cut(s) 204, 591
Asp700I GAANNNNTTC 1 cut(s) 516
Asp718I GGTACC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 478
AsuHPI GGTGA 2 cut(s) 271, 448
BaeI ACNNNNGTAYC 2 cut(s) 44, 77
BanI GGYRCC 1 cut(s) 201
BbrPI CACGTG 1 cut(s) 157
BccI CCATC 1 cut(s) 410
BciT130I CCWGG 2 cut(s) 65, 244
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 1 cut(s) 178
BcuI ACTAGT 1 cut(s) 668
BfaI CTAG 1 cut(s) 669
BfoI RGCGCY 1 cut(s) 479
BfuI GTATCC 1 cut(s) 376
BglII AGATCT 1 cut(s) 215
BisI GCNGC 1 cut(s) 79
BlpI GCTNAGC 1 cut(s) 421
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 2 cut(s) 65, 244
BmiI GGNNCC 2 cut(s) 203, 590
BmrFI CCNGG 2 cut(s) 65, 244
BpmI CTGGAG 1 cut(s) 480
Bpu1102I GCTNAGC 1 cut(s) 421
BsaAI YACGTR 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 3 cut(s) 204, 368, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 375, 598
Bse118I RCCGGY 2 cut(s) 204, 591
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 2 cut(s) 65, 244
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 2 cut(s) 375, 598
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 2 cut(s) 210, 329
BseRI GAGGAG 1 cut(s) 652
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 5, 81
BshNI GGYRCC 1 cut(s) 201
BshTI ACCGGT 2 cut(s) 204, 591
BsiSI CCGG 3 cut(s) 205, 369, 592
BslI CCNNNNNNNGG 2 cut(s) 375, 598
BsnI GGCC 2 cut(s) 5, 81
Bsp143I GATC 5 cut(s) 67, 146, 178, 215, 406
Bsp1720I GCTNAGC 1 cut(s) 421
BspACI CCGC 1 cut(s) 78
BspANI GGCC 2 cut(s) 5, 81
BspCNI CTCAG 2 cut(s) 211, 330
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 203, 590
BspPI GGATC 2 cut(s) 75, 154
BspQI GCTCTTC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 400
BsrFI RCCGGY 2 cut(s) 204, 591
BssAI RCCGGY 2 cut(s) 204, 591
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 5 cut(s) 67, 146, 178, 215, 406
Bst2UI CCWGG 2 cut(s) 65, 244
Bst6I CTCTTC 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 402
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 4 cut(s) 191, 219, 338, 421
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 5 cut(s) 70, 149, 181, 218, 409
BstMBI GATC 5 cut(s) 67, 146, 178, 215, 406
BstMWI GCNNNNNNNGC 5 cut(s) 11, 55, 262, 402, 426
BstNI CCWGG 2 cut(s) 65, 244
BstSCI CCNGG 2 cut(s) 63, 242
BstUI CGCG 1 cut(s) 78
BstX2I RGATCY 2 cut(s) 146, 215
BstYI RGATCY 2 cut(s) 146, 215
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 2 cut(s) 5, 81
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 612
Cac8I GCNNGC 1 cut(s) 427
CaiI CAGNNNCTG 1 cut(s) 256
CfoI GCGC 1 cut(s) 478
Cfr10I RCCGGY 2 cut(s) 204, 591
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 61, 202
CspAI ACCGGT 2 cut(s) 204, 591
CviAII CATG 2 cut(s) 232, 550
CviQI GTAC 2 cut(s) 61, 202
DdeI CTNAG 4 cut(s) 191, 219, 338, 421
DpnI GATC 5 cut(s) 69, 148, 180, 217, 408
DpnII GATC 5 cut(s) 67, 146, 178, 215, 406
DraI TTTAAA 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco47III AGCGCT 1 cut(s) 477
Eco72I CACGTG 1 cut(s) 157
EcoRII CCWGG 2 cut(s) 63, 242
FaeI CATG 2 cut(s) 235, 553
FatI CATG 2 cut(s) 231, 549
FauNDI CATATG 1 cut(s) 386
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 1 cut(s) 669
GlaI GCGC 1 cut(s) 477
GluI GCNGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 2 cut(s) 5, 81
HapII CCGG 3 cut(s) 205, 369, 592
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 478
Hin1II CATG 2 cut(s) 235, 553
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 1 cut(s) 681
HpaII CCGG 3 cut(s) 205, 369, 592
HphI GGTGA 2 cut(s) 271, 448
Hpy166II GTNNAC 2 cut(s) 439, 674
Hpy188I TCNGA 3 cut(s) 220, 339, 511
Hpy188III TCNNGA 2 cut(s) 182, 722
Hpy8I GTNNAC 2 cut(s) 439, 674
Hpy99I CGWCG 2 cut(s) 19, 534
HpyAV CCTTC 3 cut(s) 137, 191, 535
HpyCH4IV ACGT 2 cut(s) 123, 156
HpyCH4V TGCA 2 cut(s) 29, 297
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 55, 262, 402, 426
HpyF3I CTNAG 4 cut(s) 191, 219, 338, 421
HpySE526I ACGT 2 cut(s) 123, 156
Hsp92II CATG 2 cut(s) 235, 553
HspAI GCGC 1 cut(s) 476
KpnI GGTACC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 5 cut(s) 67, 146, 178, 215, 406
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 247
MaeI CTAG 1 cut(s) 669
MaeII ACGT 2 cut(s) 123, 156
MaeIII GTNAC 2 cut(s) 309, 490
MalI GATC 5 cut(s) 69, 148, 180, 217, 408
MboI GATC 5 cut(s) 67, 146, 178, 215, 406
MboII GAAGA 7 cut(s) 25, 56, 141, 236, 581, 591, 704
MflI RGATCY 2 cut(s) 146, 215
MluCI AATT 1 cut(s) 485
MlyI GAGTC 1 cut(s) 690
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 2 cut(s) 20, 285
MspI CCGG 3 cut(s) 205, 369, 592
MspR9I CCNGG 2 cut(s) 65, 244
MvaI CCWGG 2 cut(s) 65, 244
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 5 cut(s) 11, 55, 262, 402, 426
NdeI CATATG 1 cut(s) 386
NdeII GATC 5 cut(s) 67, 146, 178, 215, 406
NlaIII CATG 2 cut(s) 235, 553
NlaIV GGNNCC 2 cut(s) 203, 590
NmuCI GTSAC 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 516
PinAI ACCGGT 2 cut(s) 204, 591
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 1 cut(s) 689
PmaCI CACGTG 1 cut(s) 157
PmlI CACGTG 1 cut(s) 157
PpsI GAGTC 1 cut(s) 689
Ppu21I YACGTR 1 cut(s) 157
PsiI TTATAA 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 63, 242
PspCI CACGTG 1 cut(s) 157
PspGI CCWGG 2 cut(s) 63, 242
PspN4I GGNNCC 2 cut(s) 203, 590
PstNI CAGNNNCTG 1 cut(s) 256
PsuI RGATCY 2 cut(s) 146, 215
RsaI GTAC 2 cut(s) 62, 203
RsaNI GTAC 2 cut(s) 61, 202
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 20, 285
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 5 cut(s) 67, 146, 178, 215, 406
SchI GAGTC 1 cut(s) 690
ScrFI CCNGG 2 cut(s) 65, 244
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
SpeI ACTAGT 1 cut(s) 668
Sse9I AATT 1 cut(s) 485
SsiI CCGC 1 cut(s) 78
SspI AATATT 1 cut(s) 293
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 2 cut(s) 63, 242
TaiI ACGT 2 cut(s) 126, 159
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 485
TauI GCSGC 1 cut(s) 81
Tru1I TTAA 2 cut(s) 20, 285
Tru9I TTAA 2 cut(s) 20, 285
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 309
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 6 cut(s) 373, 468, 509, 582, 705, 717
TspGWI ACGGA 1 cut(s) 547
TspRI CASTG 1 cut(s) 619
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.