Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016912

Physical Location & Seq

Genomic Coordinates Reverse (-)

23208464 .. 23209269

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGTTACATTAGTTGTTGTGATGTTAGGGGTGGTGATAATGGCGGTTCTTTCGTATGGTTGCGCTCCTAGTGGTGTAGCTTACTCAGTGGGAGTGGGAGACCCAGTGTGTTGGTCCATCCCTCCCCGACCGGATTACTACGCCAACTGGTCCAATTCTCATTTCTTCAAAATCGGCGACACTCTCGTTGCAGTTTTTAACTTTCAAGGGGGGCTTTCGAATGTGGTGCAAGTGACAAAGCAAGACTACGAGAGCTGCACCGCTTACAAACCCTTTAAAATCTTCAACAACGGTCCAGCAAATTTCACATTGTTGGAAAAAGGTGTCTTATATTTCATTACTGACGTCTCAAACTACTGTAGTCTAGGGCAGAAGATTTCCATTTCTGTTCACGAGTGCGCCTGCCCCGTTAATCAACCACCAAGTGCTCCAACAGCGCCCCCTTCAGTTTCTCCACTTCCTGCTGCAGTTCCTCCATCTTCGGTTAGTCCGAATAGGTCTCAGCCTCCTGCAGCACAAGTTATAACTCCAGCAGGAGCTCCATCCCCATTAGGGTATAATGGTTCCTCCCCTAAGACTAATCCTCCTGTGAAATCTGCAGCATCAATGCTACATAAAGGAATGATGCTCGGTGTTCTTCATGGAATCTTTGGCTCGGTGGCGTTTGTTCTTTGGTCATCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

228

Amino Acids

23.94

Weight (kDa)

8.51

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	42 - 124	5.3e-18	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05250
malus_domestica	MD07G1062400.v1.1
prunus_persica	Prupe.2G073300_v2.0.a1
pyrus_communis	pycom07g04790
rosa_chinensis	RchiOBHm_Chr1g0332061
rosa_laevigata	RLG00000029695
rosa_multiflora	Rmu_sc0003358.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318410
rosa_rugosa	Rorug01G0098100
rosa_samantha	Rh1AG122000 Rh1BG093400 Rh1CG116600 Rh1DG127700
rosa_wichuraiana	Rw1G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
AatII	GACGTC	1 cut(s)	348
AciI	CCGC	2 cut(s)	44, 261
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	429
AcyI	GRCGYC	1 cut(s)	345
AdeI	CACNNNGTG	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	552
AgsI	TTSAA	3 cut(s)	169, 206, 286
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	3 cut(s)	80, 255, 539
AluI	AGCT	3 cut(s)	80, 255, 539
Alw21I	GWGCWC	2 cut(s)	430, 541
Alw26I	GTCTC	3 cut(s)	93, 352, 504
ApeKI	GCWGC	4 cut(s)	255, 464, 512, 599
ApoI	RAATTY	1 cut(s)	301
AspLEI	GCGC	3 cut(s)	65, 401, 439
AspS9I	GGNCC	3 cut(s)	114, 150, 293
AsuHPI	GGTGA	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	218
AvaII	GGWCC	3 cut(s)	114, 150, 293
BanII	GRGCYC	1 cut(s)	541
BauI	CACGAG	1 cut(s)	392
Bbv12I	GWGCWC	2 cut(s)	430, 541
BbvI	GCAGC	4 cut(s)	242, 451, 524, 611
BccI	CCATC	3 cut(s)	125, 484, 550
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BcoDI	GTCTC	3 cut(s)	93, 352, 504
BfaI	CTAG	2 cut(s)	69, 365
BfmI	CTRYAG	4 cut(s)	358, 465, 510, 597
BfoI	RGCGCY	1 cut(s)	440
BisI	GCNGC	4 cut(s)	256, 465, 513, 600
BlsI	GCNGC	4 cut(s)	257, 466, 514, 601
Bme18I	GGWCC	3 cut(s)	114, 150, 293
BmgT120I	GGNCC	3 cut(s)	114, 150, 293
BmiI	GGNNCC	1 cut(s)	565
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	2 cut(s)	611, 615
BmuI	ACTGGG	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	513
Bpu14I	TTCGAA	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	2 cut(s)	93, 504
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 120, 568, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
Bse1I	ACTGG	2 cut(s)	104, 152
BseGI	GGATG	3 cut(s)	117, 542, 677
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	99, 515
BseNI	ACTGG	2 cut(s)	104, 152
BseXI	GCAGC	4 cut(s)	242, 451, 524, 611
BsgI	GTGCAG	1 cut(s)	241
Bsh1285I	CGRYCG	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	2 cut(s)	430, 541
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmAI	GTCTC	3 cut(s)	93, 352, 504
BsmBI	CGTCTC	1 cut(s)	352
Bso31I	GGTCTC	2 cut(s)	93, 504
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	430, 541
BspACI	CCGC	2 cut(s)	44, 261
BspCNI	CTCAG	2 cut(s)	98, 514
BspLI	GGNNCC	1 cut(s)	565
BspMAI	CTGCAG	3 cut(s)	469, 514, 601
BspT104I	TTCGAA	1 cut(s)	218
BspTNI	GGTCTC	2 cut(s)	93, 504
BsrI	ACTGG	2 cut(s)	104, 152
BssNI	GRCGYC	1 cut(s)	345
BssSI	CACGAG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	293, 359
BstACI	GRCGYC	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	3 cut(s)	85, 501, 573
BstF5I	GGATG	3 cut(s)	117, 542, 677
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	3 cut(s)	65, 401, 439
BstMAI	GTCTC	3 cut(s)	93, 352, 504
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstSFI	CTRYAG	4 cut(s)	358, 465, 510, 597
BstV1I	GCAGC	4 cut(s)	242, 451, 524, 611
BstXI	CCANNNNNNTGG	1 cut(s)	111
BtsCI	GGATG	3 cut(s)	117, 542, 677
BtsIMutI	CAGTG	2 cut(s)	93, 111
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	3 cut(s)	65, 401, 439
Cfr13I	GGNCC	3 cut(s)	114, 150, 293
CviAII	CATG	1 cut(s)	641
CviJI	RGCY	6 cut(s)	80, 214, 255, 505, 539, 654
CviKI_1	RGCY	6 cut(s)	80, 214, 255, 505, 539, 654
DdeI	CTNAG	3 cut(s)	85, 501, 573
DraI	TTTAAA	1 cut(s)	277
DraIII	CACNNNGTG	1 cut(s)	425
Ecl136II	GAGCTC	1 cut(s)	539
Eco24I	GRGCYC	1 cut(s)	541
Eco31I	GGTCTC	2 cut(s)	93, 504
Eco47I	GGWCC	3 cut(s)	114, 150, 293
Eco53kI	GAGCTC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	539
EcoT38I	GRGCYC	1 cut(s)	541
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	1 cut(s)	644
FaiI	YATR	6 cut(s)	57, 331, 524, 558, 615, 642
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	1 cut(s)	640
Fnu4HI	GCNGC	4 cut(s)	256, 465, 513, 600
FokI	GGATG	3 cut(s)	104, 529, 664
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	4 cut(s)	256, 465, 513, 600
FspBI	CTAG	2 cut(s)	69, 365
GlaI	GCGC	3 cut(s)	64, 400, 438
GluI	GCNGC	4 cut(s)	256, 465, 513, 600
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	440
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	3 cut(s)	65, 401, 439
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	644
Hin6I	GCGC	3 cut(s)	63, 399, 437
HinP1I	GCGC	3 cut(s)	63, 399, 437
HinfI	GANTC	1 cut(s)	645
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	453
HpyCH4III	ACNGT	2 cut(s)	293, 359
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	6 cut(s)	191, 229, 258, 467, 512, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	3 cut(s)	85, 501, 573
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	644
HspAI	GCGC	3 cut(s)	63, 399, 437
LmnI	GCTCC	4 cut(s)	70, 433, 536, 544
Lsp1109I	GCAGC	4 cut(s)	242, 451, 524, 611
LweI	GCATC	2 cut(s)	611, 615
MaeI	CTAG	2 cut(s)	69, 365
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	4, 232
MboII	GAAGA	5 cut(s)	157, 274, 385, 471, 629
MhlI	GDGCHC	2 cut(s)	430, 541
MluCI	AATT	3 cut(s)	154, 301, 682
MmeI	TCCRAC	2 cut(s)	294, 455
MnlI	CCTC	5 cut(s)	132, 483, 516, 577, 594
MseI	TTAA	4 cut(s)	198, 276, 411, 685
MspI	CCGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	434
NlaIII	CATG	1 cut(s)	644
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	645
PkrI	GCNGC	4 cut(s)	257, 466, 514, 601
PsiI	TTATAA	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	541
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	3 cut(s)	114, 150, 293
PstI	CTGCAG	3 cut(s)	469, 514, 601
SacI	GAGCTC	1 cut(s)	541
SaqAI	TTAA	4 cut(s)	198, 276, 411, 685
SatI	GCNGC	4 cut(s)	256, 465, 513, 600
Sau96I	GGNCC	3 cut(s)	114, 150, 293
SduI	GDGCHC	2 cut(s)	430, 541
SetI	ASST	6 cut(s)	82, 257, 325, 348, 500, 541
SfaNI	GCATC	2 cut(s)	611, 615
SfcI	CTRYAG	4 cut(s)	358, 465, 510, 597
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	3 cut(s)	114, 150, 293
Sse9I	AATT	3 cut(s)	154, 301, 682
SsiI	CCGC	2 cut(s)	44, 261
SspMI	CTAG	2 cut(s)	69, 365
SstI	GAGCTC	1 cut(s)	541
TaaI	ACNGT	2 cut(s)	293, 359
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	218
TasI	AATT	3 cut(s)	154, 301, 682
TfiI	GAWTC	1 cut(s)	645
Tru1I	TTAA	4 cut(s)	198, 276, 411, 685
Tru9I	TTAA	4 cut(s)	198, 276, 411, 685
TscAI	CASTG	2 cut(s)	93, 111
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	4 cut(s)	255, 464, 512, 599
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	325, 629
TspRI	CASTG	2 cut(s)	93, 111
VpaK11BI	GGWCC	3 cut(s)	114, 150, 293
XapI	RAATTY	1 cut(s)	301
XspI	CTAG	2 cut(s)	69, 365
ZraI	GACGTC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.