RchiOBHm_Chr1g0342251
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005277
Physical Location & Seq
Reverse (-)
34179769 .. 34182049
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
ATGATTCCAGAGATGCTGAACTTGAAGAGTGCAAATGAGTACAAATATCTGCAGCAAAGCAATTGTTATTCCATTACTGGAGTTGATGATGTTGAAGAATTTCGTGTGGTCAAGGAAGCTCTAGATGTTGTCCATATTAACAAGGAAGACCAACAAAGTGTCTTTGCAATGCTTGCTGCAGTCTTGTGGCTGGGAAACATCTCATTTAGTGTGATTGATAATGAAAATCATGTGGAAGCTGTGGCAGATGAAGGTCTGTTTACTGTTGCTAAATTGGTTGGATGTAGCCCGGAAGAGCTTACACTTGCTTTATCAATTAAGAGATTGGACATTAACATCCTTGTGATCATTCTCATTGGTCTGCAGTCTCAGCTTCAAAGCCTTCCTGGTTCTCCCTCGAAAGGTTGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000146 GO:0000166 GO:0000278 GO:0000281 GO:0000302 GO:0000910 GO:0001891 GO:0001931 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005829 GO:0005856 GO:0005886 GO:0005938 GO:0006928 GO:0006935 GO:0006950 GO:0006970 GO:0006971 GO:0006979 GO:0006996 GO:0007010 GO:0007015 GO:0007033 GO:0007049 GO:0007154 GO:0008064 GO:0008092 GO:0008104 GO:0008144 GO:0008150 GO:0008360 GO:0009267 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009636 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010243 GO:0010639 GO:0014070 GO:0014074 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016459 GO:0016460 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030038 GO:0030048 GO:0030139 GO:0030554 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0030898 GO:0031033 GO:0031034 GO:0031152 GO:0031154 GO:0031254 GO:0031268 GO:0031270 GO:0031333 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031982 GO:0032009 GO:0032060 GO:0032153 GO:0032155 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032553 GO:0032555 GO:0032559 GO:0032796 GO:0032956 GO:0032970 GO:0032982 GO:0032991 GO:0033036 GO:0033043 GO:0033275 GO:0033298 GO:0033554 GO:0034461 GO:0034622 GO:0035639 GO:0036094 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042542 GO:0042594 GO:0042623 GO:0042641 GO:0042802 GO:0042803 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0044877 GO:0045177 GO:0045179 GO:0045335 GO:0046677 GO:0046683 GO:0046847 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050982 GO:0051015 GO:0051017 GO:0051128 GO:0051129 GO:0051179 GO:0051301 GO:0051493 GO:0051494 GO:0051591 GO:0051606 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0060327 GO:0060328 GO:0061572 GO:0061640 GO:0065003 GO:0065007 GO:0065008 GO:0070252 GO:0070938 GO:0071496 GO:0071840 GO:0071889 GO:0071944 GO:0090066 GO:0090702 GO:0097159 GO:0097204 GO:0097367 GO:0097435 GO:0097708 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0110053 GO:0120025 GO:0120031 GO:0120036 GO:1901265 GO:1901363 GO:1901698 GO:1901700 GO:1902903 GO:1902904 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ Myosin_head

Protein Analysis

137

Amino Acids

15.05

Weight (kDa)

4.51

Isoelectric Point (pI)

64.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myosin_head PF00063 4 - 112 1.1e-21 Myosin head (motor domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 3 cut(s) 25, 95, 377
AjnI CCWGG 1 cut(s) 385
AluBI AGCT 4 cut(s) 119, 239, 298, 373
AluI AGCT 4 cut(s) 119, 239, 298, 373
Alw26I GTCTC 1 cut(s) 372
ApeKI GCWGC 2 cut(s) 52, 176
ApoI RAATTY 1 cut(s) 98
Asp700I GAANNNNTTC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 64, 163
BciT130I CCWGG 1 cut(s) 387
BclI TGATCA 1 cut(s) 345
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 3 cut(s) 50, 177, 362
BisI GCNGC 2 cut(s) 53, 177
BlsI GCNGC 2 cut(s) 54, 178
Bme1390I CCNGG 2 cut(s) 290, 387
BmrFI CCNGG 2 cut(s) 290, 387
BmsI GCATC 1 cut(s) 3
BpiI GAAGAC 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 387
BseGI GGATG 2 cut(s) 287, 336
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 82
BseXI GCAGC 2 cut(s) 64, 163
BseYI CCCAGC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 372
Bsp143I GATC 1 cut(s) 345
BspCNI CTCAG 1 cut(s) 382
BspMAI CTGCAG 3 cut(s) 54, 181, 366
BspQI GCTCTTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 82
BssMI GATC 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 20, 288
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 287, 336
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 1 cut(s) 345
BstMWI GCNNNNNNNGC 2 cut(s) 173, 370
BstNI CCWGG 1 cut(s) 387
BstSCI CCNGG 2 cut(s) 288, 385
BstSFI CTRYAG 3 cut(s) 50, 177, 362
BstV1I GCAGC 2 cut(s) 64, 163
BstV2I GAAGAC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 287, 336
Cac8I GCNNGC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 230
CviJI RGCY 7 cut(s) 119, 190, 239, 288, 298, 373, 381
CviKI_1 RGCY 7 cut(s) 119, 190, 239, 288, 298, 373, 381
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 369
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
Eam1104I CTCTTC 2 cut(s) 20, 288
EarI CTCTTC 2 cut(s) 20, 288
EcoRII CCWGG 1 cut(s) 385
FaeI CATG 1 cut(s) 233
FaiI YATR 2 cut(s) 135, 231
FatI CATG 1 cut(s) 229
FbaI TGATCA 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 53, 177
FokI GGATG 2 cut(s) 294, 323
Fsp4HI GCNGC 2 cut(s) 53, 177
FspBI CTAG 1 cut(s) 122
GluI GCNGC 2 cut(s) 53, 177
GsaI CCCAGC 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 99
HapII CCGG 1 cut(s) 290
Hin1II CATG 1 cut(s) 233
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 261
Hpy188III TCNNGA 2 cut(s) 8, 122
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 2 cut(s) 245, 392
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 32, 52, 167, 179, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 370
HpyF3I CTNAG 1 cut(s) 369
Hsp92II CATG 1 cut(s) 233
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 1 cut(s) 345
LguI GCTCTTC 1 cut(s) 288
LpnPI CCDG 6 cut(s) 21, 63, 176, 303, 372, 399
Lsp1109I GCAGC 2 cut(s) 64, 163
LweI GCATC 1 cut(s) 3
MaeI CTAG 1 cut(s) 122
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 4 cut(s) 37, 107, 158, 305
MfeI CAATTG 1 cut(s) 61
MluCI AATT 4 cut(s) 61, 98, 272, 315
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 4 cut(s) 138, 318, 333, 412
MslI CAYNNNNRTG 1 cut(s) 341
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 290, 387
MunI CAATTG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 2 cut(s) 173, 370
NciI CCSGG 1 cut(s) 290
NdeII GATC 1 cut(s) 345
NlaIII CATG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 54, 178
Psp6I CCWGG 1 cut(s) 385
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 385
PstI CTGCAG 3 cut(s) 54, 181, 366
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 4 cut(s) 138, 318, 333, 412
SatI GCNGC 2 cut(s) 53, 177
Sau3AI GATC 1 cut(s) 345
ScrFI CCNGG 2 cut(s) 290, 387
SetI ASST 6 cut(s) 121, 241, 256, 300, 375, 406
SfaNI GCATC 1 cut(s) 3
SfcI CTRYAG 3 cut(s) 50, 177, 362
SmiMI CAYNNNNRTG 1 cut(s) 341
Sse9I AATT 4 cut(s) 61, 98, 272, 315
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 288, 385
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 398
TasI AATT 4 cut(s) 61, 98, 272, 315
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 4 cut(s) 138, 318, 333, 412
Tru9I TTAA 4 cut(s) 138, 318, 333, 412
TseI GCWGC 2 cut(s) 52, 176
TspDTI ATGAA 2 cut(s) 237, 264
XapI RAATTY 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.