Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001891.1

Orthogroup ID

OG0005277

Physical Location & Seq

Genomic Coordinates Forward (+)

115165 .. 115532

Gene Structure 368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001891.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgctgaacttgaagagtgccaatgagtacaaatatctacagcaaagcaattgttattccattactggagttgatgatgctgaagaatttcgtgtggtcaaggaagctctagaagttgtccatattaacaaggaagaccaacaaagtgcctttgcaatgcttgctgcagtcttgtggctggaaaacatctcatttagtgtgattgataatgaaaatcatgtggatgtggcagatgaaggtaacacactgttgatgatagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000146 GO:0000166 GO:0000278 GO:0000281 GO:0000302 GO:0000910 GO:0001891 GO:0001931 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005829 GO:0005856 GO:0005886 GO:0005938 GO:0006928 GO:0006935 GO:0006950 GO:0006970 GO:0006971 GO:0006979 GO:0006996 GO:0007010 GO:0007015 GO:0007033 GO:0007049 GO:0007154 GO:0008064 GO:0008092 GO:0008104 GO:0008144 GO:0008150 GO:0008360 GO:0009267 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009636 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010243 GO:0010639 GO:0014070 GO:0014074 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016459 GO:0016460 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030038 GO:0030048 GO:0030139 GO:0030554 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0030898 GO:0031033 GO:0031034 GO:0031152 GO:0031154 GO:0031254 GO:0031268 GO:0031270 GO:0031333 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031982 GO:0032009 GO:0032060 GO:0032153 GO:0032155 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032553 GO:0032555 GO:0032559 GO:0032796 GO:0032956 GO:0032970 GO:0032982 GO:0032991 GO:0033036 GO:0033043 GO:0033275 GO:0033298 GO:0033554 GO:0034461 GO:0034622 GO:0035639 GO:0036094 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042542 GO:0042594 GO:0042623 GO:0042641 GO:0042802 GO:0042803 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0044877 GO:0045177 GO:0045179 GO:0045335 GO:0046677 GO:0046683 GO:0046847 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050982 GO:0051015 GO:0051017 GO:0051128 GO:0051129 GO:0051179 GO:0051301 GO:0051493 GO:0051494 GO:0051591 GO:0051606 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0060327 GO:0060328 GO:0061572 GO:0061640 GO:0065003 GO:0065007 GO:0065008 GO:0070252 GO:0070938 GO:0071496 GO:0071840 GO:0071889 GO:0071944 GO:0090066 GO:0090702 GO:0097159 GO:0097204 GO:0097367 GO:0097435 GO:0097708 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0110053 GO:0120025 GO:0120031 GO:0120036 GO:1901265 GO:1901363 GO:1901698 GO:1901700 GO:1902903 GO:1902904 GO:1903047 GO:1990753

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ Myosin_head

Protein Analysis

87

Amino Acids

9.85

Weight (kDa)

4.23

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50360 AT3G19960 AT3G19960 AT3G19960 AT3G19960 AT3G19960
fragaria_vesca	FvH4_4g37130 FvH4_4g37130
malus_domestica	MD13G1003300.v1.1 MD16G1004100.v1.1
prunus_persica	Prupe.1G349100_v2.0.a1 Prupe.1G349100_v2.0.a1
pyrus_communis	pycom13g00280 pycom16g00190
rosa_chinensis	RchiOBHm_Chr1g0342251 RchiOBHm_Chr4g0446931
rosa_laevigata	RLG00000005620 RLG00000007463
rosa_multiflora	Rmu_sc0001753.1_g000008 Rmu_sc0001891.1_g000022 Rmu_sc0003072.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322140 Rroxscaffold_5G00387260
rosa_rugosa	Rorug04G0376300
rosa_samantha	Rh4BG446500 Rh4CG463800 Rh6AG122400
rosa_wichuraiana	Rw1G021800 Rw4G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	2 cut(s)	38, 165
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	38, 165
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	2 cut(s)	107, 178
CviKI_1	RGCY	2 cut(s)	107, 178
CviQI	GTAC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	102
FaeI	CATG	1 cut(s)	221
FaiI	YATR	2 cut(s)	123, 219
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	87
Hin1II	CATG	1 cut(s)	221
Hpy188III	TCNNGA	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	155, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	221
LpnPI	CCDG	2 cut(s)	51, 164
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	239
MboII	GAAGA	3 cut(s)	25, 95, 146
MfeI	CAATTG	1 cut(s)	49
MluCI	AATT	2 cut(s)	49, 86
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	1 cut(s)	165
SetI	ASST	2 cut(s)	109, 241
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	2 cut(s)	38, 165
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	49, 86
SspMI	CTAG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	249
TasI	AATT	2 cut(s)	49, 86
TatI	WGTACW	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	225, 249
TspRI	CASTG	1 cut(s)	252
XapI	RAATTY	1 cut(s)	86
XbaI	TCTAGA	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.