Rh6AG122400
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005277
Physical Location & Seq
Forward (+)
18232462 .. 18236030
3569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG122400.1

Sequence Viewer

Length: 462 bp
ATGAGTACTTGGGGTCTTGTGGAACAATTGAGGAGTTGCATTTGCTGCGGTGTCAAGTGCGAGATAAGGATGGAGAGTGAAGCTGATCTCCTTGGAAGGATGCTCACTGTTGACAACAGGAGAATTTCGTGTGGTCAAGAAGCTCTAGATGTTGTCCATATTAACAAGGAAGACCAACAAAGTGTCTTTGCAATGCTTGTTGCAGTCTTGTGGCTGGGAAACATCTCATTTAGTGTGATTGATAATGAAAATCATGTGGAAGCTGTGGCAAATGAAGGTCTGTTTACTGTTGCTAAATTGGTTGGATGTAGCCCGGAGGAGCTTACACTTGCTTTAATAATTAAGAGATTGGACATTAACATCCTTGTGATCATTCTCATTGGTCTGCAATCTCAGCTCCAAAGCCTTCCTGGTTCTCCCCCGAAAGGAAATGAAAGACCAAGGCTTTTGAATAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000146 GO:0000166 GO:0000278 GO:0000281 GO:0000302 GO:0000910 GO:0001891 GO:0001931 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005829 GO:0005856 GO:0005886 GO:0005938 GO:0006928 GO:0006935 GO:0006950 GO:0006970 GO:0006971 GO:0006979 GO:0006996 GO:0007010 GO:0007015 GO:0007033 GO:0007049 GO:0007154 GO:0008064 GO:0008092 GO:0008104 GO:0008144 GO:0008150 GO:0008360 GO:0009267 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009636 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010243 GO:0010639 GO:0014070 GO:0014074 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016459 GO:0016460 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030038 GO:0030048 GO:0030139 GO:0030554 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0030898 GO:0031033 GO:0031034 GO:0031152 GO:0031154 GO:0031254 GO:0031268 GO:0031270 GO:0031333 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031982 GO:0032009 GO:0032060 GO:0032153 GO:0032155 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032553 GO:0032555 GO:0032559 GO:0032796 GO:0032956 GO:0032970 GO:0032982 GO:0032991 GO:0033036 GO:0033043 GO:0033275 GO:0033298 GO:0033554 GO:0034461 GO:0034622 GO:0035639 GO:0036094 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042542 GO:0042594 GO:0042623 GO:0042641 GO:0042802 GO:0042803 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0044877 GO:0045177 GO:0045179 GO:0045335 GO:0046677 GO:0046683 GO:0046847 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050982 GO:0051015 GO:0051017 GO:0051128 GO:0051129 GO:0051179 GO:0051301 GO:0051493 GO:0051494 GO:0051591 GO:0051606 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0060327 GO:0060328 GO:0061572 GO:0061640 GO:0065003 GO:0065007 GO:0065008 GO:0070252 GO:0070938 GO:0071496 GO:0071840 GO:0071889 GO:0071944 GO:0090066 GO:0090702 GO:0097159 GO:0097204 GO:0097367 GO:0097435 GO:0097708 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0110053 GO:0120025 GO:0120031 GO:0120036 GO:1901265 GO:1901363 GO:1901698 GO:1901700 GO:1902903 GO:1902904 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ Myosin_head

Protein Analysis

153

Amino Acids

16.95

Weight (kDa)

5.41

Isoelectric Point (pI)

74.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myosin_head PF00063 38 - 120 5.4e-09 Myosin head (motor domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 123
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 1 cut(s) 451
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 5 cut(s) 83, 143, 263, 322, 397
AluI AGCT 5 cut(s) 83, 143, 263, 322, 397
ApeKI GCWGC 1 cut(s) 45
ApoI RAATTY 1 cut(s) 123
AsuC2I CCSGG 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 1 cut(s) 369
BcnI CCSGG 1 cut(s) 314
BfaI CTAG 1 cut(s) 146
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 314, 411
BmrFI CCNGG 2 cut(s) 314, 411
BmsI GCATC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 91, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 91, 440
BseGI GGATG 4 cut(s) 75, 105, 311, 360
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 407
BseRI GAGGAG 2 cut(s) 46, 332
BseXI GCAGC 1 cut(s) 32
BseYI CCCAGC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 425
Bsp143I GATC 2 cut(s) 85, 369
BspACI CCGC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 406
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 91, 440
BssMI GATC 2 cut(s) 85, 369
BssT1I CCWWGG 2 cut(s) 91, 440
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 2 cut(s) 109, 289
BstAPI GCANNNNNTGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 393
BstF5I GGATG 4 cut(s) 75, 105, 311, 360
BstKTI GATC 2 cut(s) 88, 372
BstMBI GATC 2 cut(s) 85, 369
BstMWI GCNNNNNNNGC 2 cut(s) 45, 394
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 2 cut(s) 312, 409
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 177
BtsCI GGATG 4 cut(s) 75, 105, 311, 360
BtsIMutI CAGTG 1 cut(s) 105
Csp6I GTAC 1 cut(s) 6
CviAII CATG 1 cut(s) 254
CviJI RGCY 9 cut(s) 83, 143, 214, 263, 312, 322, 397, 405, 445
CviKI_1 RGCY 9 cut(s) 83, 143, 214, 263, 312, 322, 397, 405, 445
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 393
DpnI GATC 2 cut(s) 87, 371
DpnII GATC 2 cut(s) 85, 369
Eco130I CCWWGG 2 cut(s) 91, 440
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 2 cut(s) 91, 440
ErhI CCWWGG 2 cut(s) 91, 440
FaeI CATG 1 cut(s) 257
FaiI YATR 2 cut(s) 159, 255
FatI CATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 4 cut(s) 82, 112, 318, 347
Fsp4HI GCNGC 1 cut(s) 46
FspBI CTAG 1 cut(s) 146
GluI GCNGC 1 cut(s) 46
GsaI CCCAGC 1 cut(s) 218
HapII CCGG 1 cut(s) 314
Hin1II CATG 1 cut(s) 257
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HpaII CCGG 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 112, 285
Hpy188III TCNNGA 2 cut(s) 137, 146
Hpy8I GTNNAC 2 cut(s) 112, 285
HpyAV CCTTC 3 cut(s) 90, 269, 416
HpyCH4III ACNGT 2 cut(s) 109, 289
HpyCH4V TGCA 4 cut(s) 39, 191, 203, 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 394
HpyF3I CTNAG 1 cut(s) 393
Hsp92II CATG 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 2 cut(s) 85, 369
LmnI GCTCC 2 cut(s) 319, 402
LpnPI CCDG 5 cut(s) 103, 200, 327, 396, 423
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 146
MalI GATC 2 cut(s) 87, 371
MboI GATC 2 cut(s) 85, 369
MboII GAAGA 1 cut(s) 182
MfeI CAATTG 1 cut(s) 26
MluCI AATT 4 cut(s) 26, 123, 296, 339
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 2 cut(s) 24, 310
MseI TTAA 4 cut(s) 162, 335, 342, 357
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 2 cut(s) 314, 411
MunI CAATTG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 2 cut(s) 45, 394
NciI CCSGG 1 cut(s) 314
NdeII GATC 2 cut(s) 85, 369
NlaIII CATG 1 cut(s) 257
PkrI GCNGC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 409
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 1 cut(s) 409
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 4 cut(s) 162, 335, 342, 357
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 2 cut(s) 85, 369
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 314, 411
SetI ASST 6 cut(s) 85, 145, 265, 280, 324, 399
SfaNI GCATC 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 365
Sse9I AATT 4 cut(s) 26, 123, 296, 339
SsiI CCGC 1 cut(s) 48
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 2 cut(s) 312, 409
StyI CCWWGG 2 cut(s) 91, 440
TaaI ACNGT 2 cut(s) 109, 289
TasI AATT 4 cut(s) 26, 123, 296, 339
TatI WGTACW 1 cut(s) 5
Tru1I TTAA 4 cut(s) 162, 335, 342, 357
Tru9I TTAA 4 cut(s) 162, 335, 342, 357
TscAI CASTG 1 cut(s) 112
TseI GCWGC 1 cut(s) 45
TspDTI ATGAA 3 cut(s) 261, 288, 447
TspRI CASTG 1 cut(s) 112
XapI RAATTY 1 cut(s) 123
XbaI TCTAGA 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XspI CTAG 1 cut(s) 146
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.