Rmu_sc0003072.1_g000001
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003072.1
OG0005277
Physical Location & Seq
Forward (+)
2049 .. 5115
3067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003072.1_g000001.1.cds

Sequence Viewer

Length: 663 bp
atgagaactcactattttcaggaagctctagatgttgtccatattaacaaggaagaccaacaaagtgtctttgcaatgcttgctgcagtcttgtggctgggaaacatctcatttagtgtgattgataatgaaaatctgaaaatcatgtggaagctgtggcagatgaagcattgtgatttacaaatcatatcgaacatgcatcttgttatgaagaatattgagctatctttgtatgtgactgtgggagcagcttggttcaatggtgcttttagcaaggtggcaaaggcagggcaggctgcagttgtcacccaagcattcaaggtgaggaaacaagtcagggatcttatattttcaagtttcttgatgatgcctaaagaagttgaatccagggctgaatttgaagctataaatgaaggggatggtgcattttacaggccaaagatagatatcagtgtatatgatgcattgaacatgaagtttcagtgtgcaacatttcaggtagagcatattattagagaagagaatatgatggcagctcaggagatcatcgagctatatattttgaaggaagttgatctccttcctgatgatcctaaatctgcaaaaagtataaagcaattggagcaggtccttccaggttttattgaagctaaaggcagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000146 GO:0000166 GO:0000278 GO:0000281 GO:0000302 GO:0000910 GO:0001891 GO:0001931 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005829 GO:0005856 GO:0005886 GO:0005938 GO:0006928 GO:0006935 GO:0006950 GO:0006970 GO:0006971 GO:0006979 GO:0006996 GO:0007010 GO:0007015 GO:0007033 GO:0007049 GO:0007154 GO:0008064 GO:0008092 GO:0008104 GO:0008144 GO:0008150 GO:0008360 GO:0009267 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009636 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010243 GO:0010639 GO:0014070 GO:0014074 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016459 GO:0016460 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030038 GO:0030048 GO:0030139 GO:0030554 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0030898 GO:0031033 GO:0031034 GO:0031152 GO:0031154 GO:0031254 GO:0031268 GO:0031270 GO:0031333 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031982 GO:0032009 GO:0032060 GO:0032153 GO:0032155 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032553 GO:0032555 GO:0032559 GO:0032796 GO:0032956 GO:0032970 GO:0032982 GO:0032991 GO:0033036 GO:0033043 GO:0033275 GO:0033298 GO:0033554 GO:0034461 GO:0034622 GO:0035639 GO:0036094 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042542 GO:0042594 GO:0042623 GO:0042641 GO:0042802 GO:0042803 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0044877 GO:0045177 GO:0045179 GO:0045335 GO:0046677 GO:0046683 GO:0046847 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050982 GO:0051015 GO:0051017 GO:0051128 GO:0051129 GO:0051179 GO:0051301 GO:0051493 GO:0051494 GO:0051591 GO:0051606 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0060327 GO:0060328 GO:0061572 GO:0061640 GO:0065003 GO:0065007 GO:0065008 GO:0070252 GO:0070938 GO:0071496 GO:0071840 GO:0071889 GO:0071944 GO:0090066 GO:0090702 GO:0097159 GO:0097204 GO:0097367 GO:0097435 GO:0097708 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0110053 GO:0120025 GO:0120031 GO:0120036 GO:1901265 GO:1901363 GO:1901698 GO:1901700 GO:1902903 GO:1902904 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ Myosin_head

Protein Analysis

220

Amino Acids

25.15

Weight (kDa)

5.59

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 616
AclWI GGATC 2 cut(s) 348, 584
AcsI RAATTY 1 cut(s) 395
AgsI TTSAA 8 cut(s) 259, 319, 354, 383, 401, 469, 565, 647
AjnI CCWGG 2 cut(s) 386, 634
AluBI AGCT 9 cut(s) 26, 154, 223, 251, 404, 536, 553, 650, 660
AluI AGCT 9 cut(s) 26, 154, 223, 251, 404, 536, 553, 650, 660
AlwI GGATC 2 cut(s) 348, 584
AoxI GGCC 1 cut(s) 434
ApeKI GCWGC 5 cut(s) 83, 248, 296, 533, 657
ApoI RAATTY 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 2 cut(s) 298, 334
AvaII GGWCC 1 cut(s) 628
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 4 cut(s) 70, 260, 283, 545
BccI CCATC 2 cut(s) 413, 523
BciT130I CCWGG 2 cut(s) 388, 636
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 2 cut(s) 84, 297
BfuAI ACCTGC 1 cut(s) 616
BisI GCNGC 5 cut(s) 84, 249, 297, 534, 658
BlsI GCNGC 5 cut(s) 85, 250, 298, 535, 659
Bme1390I CCNGG 2 cut(s) 388, 636
Bme18I GGWCC 1 cut(s) 628
BmgT120I GGNCC 1 cut(s) 628
BmrFI CCNGG 2 cut(s) 388, 636
BmsI GCATC 3 cut(s) 208, 357, 451
BpiI GAAGAC 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 537
BsaBI GATNNNNATC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 446
BseBI CCWGG 2 cut(s) 388, 636
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 1 cut(s) 424
BseJI GATNNNNATC 1 cut(s) 446
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 551
BseXI GCAGC 4 cut(s) 70, 260, 283, 545
BseYI CCCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 436
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 1 cut(s) 436
Bsp143I GATC 4 cut(s) 340, 543, 574, 589
BspANI GGCC 1 cut(s) 436
BspCNI CTCAG 1 cut(s) 550
BspMAI CTGCAG 2 cut(s) 88, 301
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 2 cut(s) 348, 584
BsrDI GCAATG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 4 cut(s) 340, 543, 574, 589
Bst2UI CCWGG 2 cut(s) 388, 636
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 513
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 81, 294
BstDEI CTNAG 1 cut(s) 537
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 4 cut(s) 343, 546, 577, 592
BstMBI GATC 4 cut(s) 340, 543, 574, 589
BstMWI GCNNNNNNNGC 4 cut(s) 80, 166, 293, 622
BstNI CCWGG 2 cut(s) 388, 636
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 386, 634
BstSFI CTRYAG 2 cut(s) 84, 297
BstV1I GCAGC 4 cut(s) 70, 260, 283, 545
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 1 cut(s) 436
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 2 cut(s) 457, 488
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 81, 294
Cfr13I GGNCC 1 cut(s) 628
CviAII CATG 3 cut(s) 145, 196, 472
DdeI CTNAG 1 cut(s) 537
DpnI GATC 4 cut(s) 342, 545, 576, 591
DpnII GATC 4 cut(s) 340, 543, 574, 589
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 628
EcoO109I RGGNCCY 1 cut(s) 628
EcoRII CCWGG 2 cut(s) 386, 634
EcoRV GATATC 1 cut(s) 448
EcoT22I ATGCAT 2 cut(s) 201, 466
FaeI CATG 3 cut(s) 148, 199, 475
FatI CATG 3 cut(s) 144, 195, 471
Fnu4HI GCNGC 5 cut(s) 84, 249, 297, 534, 658
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 5 cut(s) 84, 249, 297, 534, 658
FspBI CTAG 1 cut(s) 29
GluI GCNGC 5 cut(s) 84, 249, 297, 534, 658
GsaI CCCAGC 1 cut(s) 101
HaeIII GGCC 1 cut(s) 436
Hin1II CATG 3 cut(s) 148, 199, 475
HinfI GANTC 1 cut(s) 383
HphI GGTGA 2 cut(s) 298, 334
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 5 cut(s) 20, 29, 361, 539, 584
HpyAV CCTTC 4 cut(s) 407, 559, 590, 641
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 8 cut(s) 74, 86, 199, 299, 425, 464, 488, 602
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 166, 293, 622
HpyF3I CTNAG 1 cut(s) 537
Hsp92II CATG 3 cut(s) 148, 199, 475
Kzo9I GATC 4 cut(s) 340, 543, 574, 589
LmnI GCTCC 2 cut(s) 245, 622
Lsp1109I GCAGC 4 cut(s) 70, 260, 283, 545
LweI GCATC 3 cut(s) 208, 357, 451
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 235, 304
MalI GATC 4 cut(s) 342, 545, 576, 591
MboI GATC 4 cut(s) 340, 543, 574, 589
MboII GAAGA 3 cut(s) 65, 223, 530
MfeI CAATTG 1 cut(s) 617
MflI RGATCY 1 cut(s) 340
MluCI AATT 2 cut(s) 395, 617
MnlI CCTC 1 cut(s) 318
Mph1103I ATGCAT 2 cut(s) 201, 466
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 660
MspR9I CCNGG 2 cut(s) 388, 636
MunI CAATTG 1 cut(s) 617
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 2 cut(s) 388, 636
MwoI GCNNNNNNNGC 4 cut(s) 80, 166, 293, 622
NdeII GATC 4 cut(s) 340, 543, 574, 589
NlaIII CATG 3 cut(s) 148, 199, 475
NmuCI GTSAC 2 cut(s) 235, 304
NsiI ATGCAT 2 cut(s) 201, 466
NspI RCATGY 1 cut(s) 199
PctI GAATGC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 5 cut(s) 85, 250, 298, 535, 659
PpuMI RGGWCCY 1 cut(s) 628
Psp5II RGGWCCY 1 cut(s) 628
Psp6I CCWGG 2 cut(s) 386, 634
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 2 cut(s) 386, 634
PspPI GGNCC 1 cut(s) 628
PspPPI RGGWCCY 1 cut(s) 628
PstI CTGCAG 2 cut(s) 88, 301
PsuI RGATCY 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 660
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 5 cut(s) 84, 249, 297, 534, 658
Sau3AI GATC 4 cut(s) 340, 543, 574, 589
Sau96I GGNCC 1 cut(s) 628
ScrFI CCNGG 2 cut(s) 388, 636
SfaNI GCATC 3 cut(s) 208, 357, 451
SfcI CTRYAG 2 cut(s) 84, 297
SinI GGWCC 1 cut(s) 628
Sse9I AATT 2 cut(s) 395, 617
SspI AATATT 1 cut(s) 217
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 386, 634
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 191, 549
TasI AATT 2 cut(s) 395, 617
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 457, 488
TseFI GTSAC 2 cut(s) 235, 304
TseI GCWGC 5 cut(s) 83, 248, 296, 533, 657
Tsp45I GTSAC 2 cut(s) 235, 304
TspDTI ATGAA 5 cut(s) 144, 179, 224, 426, 488
TspRI CASTG 2 cut(s) 457, 488
VpaK11BI GGWCC 1 cut(s) 628
XapI RAATTY 1 cut(s) 395
XbaI TCTAGA 1 cut(s) 28
XceI RCATGY 1 cut(s) 199
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 2 cut(s) 201, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.