RchiOBHm_Chr1g0347591

UPF0565 protein C2orf69 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013327
Physical Location & Seq
Reverse (-)
40260965 .. 40263528
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
ATGGACCGCTGGCGTGGAGTTCTAAAAGTCCCATTACATCCTCTTGCTGGGACCTGCTACCGTGTTGCAGCATCTCTCTGCCTTTCCCCTACTTCCGAAACACTAATTGTTCCTTCAGCAAATGCCATCTTTTTTGGCGGAGATCGAGTTGCAGGCACTGGTAATCTAGTTGTTGAGAGGTTATCAGACTTGCAGAATATAGCTGAAATACTGGTTGCAAAGATTGGTGGTTCAGTCAATGCTTGGGTTATTGAAGCTTCTGATTTCAATGGGTCTTTCGCTGTGTACAAGGACTTTATACCATCTGTTAATCAACGGGGAGAGCCAAAATCATACTGCCCTGTTGGATATCCAGCTTCTGGATCAATTGTTTCACTCTTATCAAATTTCCTTGAAGAGGTGAAGAATAGCATAGTGAGACAGAACAAACTGTGCTCACCAGGAAAATCCGCATCACATTTTACTCAACCTGAGACATTAATTTTTGGATTTAGCAAGGGTGGCACTGTACTTAACCAGATAGTTACCGAGCTTGGCTTCTCAGATATTGAATTATCTGGAGGTGAGCTCGTGGAGGAAAAAAAAATTAGTATGGAAGAAGAGATTCATATCATACCTAGAACAAAGGAAACCCTTCTGAACAGCATCAGAGAAATTCATTATGTGGATGTTGGACTAAATTCACCTGGTGCATATATCACTGACCATAGTGCGATTGAGAAAATCTCCAAACGCCTAACACAAGTAGATAGAGGAATCCGTTTTATCCTTCATGGAACACCCAGGCAATGGTGTGACAGCAGGCGTTCTTGGATATGCAATGAAAAAGACAAATTGGTTCATCTGCTTGAATCTGAAGCTCAAAGAAGAGGTGGAAAATTACAGGTTTGTGAGAAATTCTATTTTCCTGATAGGCCACCTGATTTGCAGATGCATTTTGAAATAATTGAAAAATTGGATGTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0565

Protein Analysis

322

Amino Acids

35.76

Weight (kDa)

6.27

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2orf69 PF10561 160 - 284 2.8e-09 C2orf69
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44850 AT2G44850 AT2G44850
fragaria_vesca FvH4_7g09990
malus_domestica MD07G1104800.v1.1
prunus_persica Prupe.2G132600_v2.0.a1 Prupe.2G132600_v2.0.a1
pyrus_communis pycom07g08990
rosa_chinensis RchiOBHm_Chr1g0347591
rosa_laevigata RLG00000028735
rosa_multiflora Rmu_sc0010621.1_g000015 Rmu_sc0021384.1_g000001
rosa_roxburghii Rroxscaffold_4G00307630
rosa_rugosa Rorug01G0188100
rosa_samantha Rh1CG190000 Rh1DG201000
rosa_wichuraiana Rw0G013660 Rw1G017230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AccB7I CCANNNNNTGG 2 cut(s) 359, 789
AciI CCGC 3 cut(s) 7, 138, 450
AclWI GGATC 1 cut(s) 370
AcsI RAATTY 4 cut(s) 385, 654, 679, 896
AcuI CTGAAG 2 cut(s) 99, 876
AdeI CACNNNGTG 1 cut(s) 689
AfaI GTAC 2 cut(s) 287, 510
AfiI CCNNNNNNNGG 4 cut(s) 47, 359, 397, 789
AgsI TTSAA 7 cut(s) 254, 268, 395, 551, 851, 941, 950
AjnI CCWGG 3 cut(s) 439, 685, 782
AluBI AGCT 6 cut(s) 203, 257, 356, 532, 568, 860
AluI AGCT 6 cut(s) 203, 257, 356, 532, 568, 860
Alw21I GWGCWC 2 cut(s) 437, 570
Alw26I GTCTC 2 cut(s) 412, 467
AlwI GGATC 1 cut(s) 370
AlwNI CAGNNNCTG 2 cut(s) 158, 359
AoxI GGCC 1 cut(s) 914
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 4 cut(s) 385, 654, 679, 896
AseI ATTAAT 1 cut(s) 479
Asp700I GAANNNNTTC 2 cut(s) 603, 633
AspS9I GGNCC 2 cut(s) 4, 51
AsuHPI GGTGA 4 cut(s) 412, 429, 575, 675
AvaII GGWCC 2 cut(s) 4, 51
BanII GRGCYC 1 cut(s) 570
BauI CACGAG 1 cut(s) 569
Bbv12I GWGCWC 2 cut(s) 437, 570
BbvI GCAGC 1 cut(s) 80
BccI CCATC 2 cut(s) 134, 310
BciT130I CCWGG 3 cut(s) 441, 687, 784
BcoDI GTCTC 2 cut(s) 412, 467
BfaI CTAG 2 cut(s) 167, 618
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 3 cut(s) 441, 687, 784
Bme18I GGWCC 2 cut(s) 4, 51
BmgT120I GGNCC 2 cut(s) 4, 51
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 3 cut(s) 441, 687, 784
BmsI GCATC 4 cut(s) 80, 461, 654, 921
BplI GAGNNNNNCTC 4 cut(s) 552, 584, 710, 742
BpmI CTGGAG 1 cut(s) 579
BsaBI GATNNNNATC 1 cut(s) 608
BsaJI CCNNGG 1 cut(s) 782
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 359, 397, 789
Bse1I ACTGG 2 cut(s) 163, 216
Bse3DI GCAATG 2 cut(s) 794, 826
Bse8I GATNNNNATC 1 cut(s) 608
BseBI CCWGG 3 cut(s) 441, 687, 784
BseDI CCNNGG 1 cut(s) 782
BseGI GGATG 3 cut(s) 37, 673, 964
BseJI GATNNNNATC 1 cut(s) 608
BseLI CCNNNNNNNGG 4 cut(s) 47, 359, 397, 789
BseMI GCAATG 2 cut(s) 794, 826
BseMII CTCAG 2 cut(s) 462, 555
BseNI ACTGG 2 cut(s) 163, 216
BseXI GCAGC 1 cut(s) 80
BseYI CCCAGC 1 cut(s) 47
BshFI GGCC 1 cut(s) 916
BsiHKAI GWGCWC 2 cut(s) 437, 570
BslFI GGGAC 2 cut(s) 14, 64
BslI CCNNNNNNNGG 4 cut(s) 47, 359, 397, 789
BsmAI GTCTC 2 cut(s) 412, 467
BsmFI GGGAC 2 cut(s) 14, 64
BsnI GGCC 1 cut(s) 916
Bsp1286I GDGCHC 2 cut(s) 437, 570
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 2 cut(s) 142, 362
BspACI CCGC 3 cut(s) 7, 138, 450
BspANI GGCC 1 cut(s) 916
BspCNI CTCAG 2 cut(s) 463, 554
BspLI GGNNCC 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 370
BsrDI GCAATG 2 cut(s) 794, 826
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 2 cut(s) 163, 216
BssECI CCNNGG 1 cut(s) 782
BssMI GATC 2 cut(s) 142, 362
BssSI CACGAG 1 cut(s) 569
Bst2BI CACGAG 1 cut(s) 569
Bst2UI CCWGG 3 cut(s) 441, 687, 784
Bst4CI ACNGT 3 cut(s) 62, 432, 508
Bst6I CTCTTC 3 cut(s) 390, 594, 862
BstAUI TGTACA 1 cut(s) 285
BstC8I GCNNGC 3 cut(s) 11, 154, 803
BstDEI CTNAG 2 cut(s) 471, 541
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 3 cut(s) 37, 673, 964
BstKTI GATC 2 cut(s) 145, 365
BstMAI GTCTC 2 cut(s) 412, 467
BstMBI GATC 2 cut(s) 142, 362
BstMWI GCNNNNNNNGC 1 cut(s) 501
BstNI CCWGG 3 cut(s) 441, 687, 784
BstSCI CCNGG 3 cut(s) 439, 685, 782
BstV1I GCAGC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 916
BtsCI GGATG 3 cut(s) 37, 673, 964
BtsIMutI CAGTG 3 cut(s) 156, 504, 699
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 3 cut(s) 11, 154, 803
CaiI CAGNNNCTG 2 cut(s) 158, 359
Cfr13I GGNCC 2 cut(s) 4, 51
CsiI ACCWGGT 1 cut(s) 685
Csp6I GTAC 2 cut(s) 286, 509
CspCI CAANNNNNGTGG 2 cut(s) 906, 941
CviAII CATG 1 cut(s) 773
CviJI RGCY 9 cut(s) 203, 257, 325, 356, 532, 537, 568, 860, 916
CviKI_1 RGCY 9 cut(s) 203, 257, 325, 356, 532, 537, 568, 860, 916
CviQI GTAC 2 cut(s) 286, 509
DdeI CTNAG 2 cut(s) 471, 541
DpnI GATC 2 cut(s) 144, 364
DpnII GATC 2 cut(s) 142, 362
DraIII CACNNNGTG 1 cut(s) 689
Eam1104I CTCTTC 3 cut(s) 390, 594, 862
EarI CTCTTC 3 cut(s) 390, 594, 862
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 570
Eco32I GATATC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 4, 51
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 2 cut(s) 99, 876
EcoICRI GAGCTC 1 cut(s) 568
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 3 cut(s) 439, 685, 782
EcoRV GATATC 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 936
EcoT38I GRGCYC 1 cut(s) 570
FaeI CATG 1 cut(s) 776
FaqI GGGAC 2 cut(s) 14, 64
FatI CATG 1 cut(s) 772
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 2 cut(s) 24, 680
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 167, 618
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 1 cut(s) 916
Hin1II CATG 1 cut(s) 776
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 3 cut(s) 604, 756, 851
HphI GGTGA 4 cut(s) 412, 429, 575, 675
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 7 cut(s) 97, 187, 262, 544, 639, 650, 856
Hpy188III TCNNGA 3 cut(s) 360, 558, 908
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 3 cut(s) 123, 644, 779
HpyCH4III ACNGT 3 cut(s) 62, 432, 508
HpyCH4V TGCA 8 cut(s) 68, 152, 193, 218, 692, 819, 928, 934
HpyF10VI GCNNNNNNNGC 1 cut(s) 501
HpyF3I CTNAG 2 cut(s) 471, 541
Hsp92II CATG 1 cut(s) 776
Kzo9I GATC 2 cut(s) 142, 362
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 4 cut(s) 80, 461, 654, 921
MabI ACCWGGT 1 cut(s) 685
MaeI CTAG 2 cut(s) 167, 618
MaeIII GTNAC 2 cut(s) 523, 794
MalI GATC 2 cut(s) 144, 364
MboI GATC 2 cut(s) 142, 362
MboII GAAGA 5 cut(s) 407, 415, 608, 611, 879
MfeI CAATTG 1 cut(s) 366
MhlI GDGCHC 2 cut(s) 437, 570
MmeI TCCRAC 2 cut(s) 325, 652
MnlI CCTC 7 cut(s) 51, 171, 391, 554, 568, 746, 863
Mph1103I ATGCAT 1 cut(s) 936
MroXI GAANNNNTTC 2 cut(s) 603, 633
MseI TTAA 4 cut(s) 309, 479, 513, 967
MspA1I CMGCKG 1 cut(s) 9
MspR9I CCNGG 3 cut(s) 441, 687, 784
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 3 cut(s) 441, 687, 784
MwoI GCNNNNNNNGC 1 cut(s) 501
NdeII GATC 2 cut(s) 142, 362
NlaIII CATG 1 cut(s) 776
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 794
NsiI ATGCAT 1 cut(s) 936
PdmI GAANNNNTTC 2 cut(s) 603, 633
PfeI GAWTC 3 cut(s) 604, 756, 851
PflMI CCANNNNNTGG 2 cut(s) 359, 789
PkrI GCNGC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 51
PshBI ATTAAT 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 570
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 439, 685, 782
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 439, 685, 782
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 2 cut(s) 4, 51
PspPPI RGGWCCY 1 cut(s) 51
PstNI CAGNNNCTG 2 cut(s) 158, 359
RsaI GTAC 2 cut(s) 287, 510
RsaNI GTAC 2 cut(s) 286, 509
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 4 cut(s) 309, 479, 513, 967
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 142, 362
Sau96I GGNCC 2 cut(s) 4, 51
ScrFI CCNGG 3 cut(s) 441, 687, 784
SduI GDGCHC 2 cut(s) 437, 570
SexAI ACCWGGT 1 cut(s) 685
SfaNI GCATC 4 cut(s) 80, 461, 654, 921
SinI GGWCC 2 cut(s) 4, 51
SsiI CCGC 3 cut(s) 7, 138, 450
SspMI CTAG 2 cut(s) 167, 618
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 3 cut(s) 439, 685, 782
TaaI ACNGT 3 cut(s) 62, 432, 508
TaqI TCGA 1 cut(s) 145
TatI WGTACW 2 cut(s) 285, 508
TfiI GAWTC 3 cut(s) 604, 756, 851
Tru1I TTAA 4 cut(s) 309, 479, 513, 967
Tru9I TTAA 4 cut(s) 309, 479, 513, 967
TscAI CASTG 3 cut(s) 163, 511, 706
TseFI GTSAC 1 cut(s) 794
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 794
TspDTI ATGAA 5 cut(s) 596, 647, 761, 830, 837
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 3 cut(s) 163, 511, 706
Van91I CCANNNNNTGG 2 cut(s) 359, 789
VpaK11BI GGWCC 2 cut(s) 4, 51
VspI ATTAAT 1 cut(s) 479
XagI CCTNNNNNAGG 1 cut(s) 395
XapI RAATTY 4 cut(s) 385, 654, 679, 896
XmnI GAANNNNTTC 2 cut(s) 603, 633
XspI CTAG 2 cut(s) 167, 618
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.