RchiOBHm_Chr1g0349911

transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018549
Physical Location & Seq
Reverse (-)
43057721 .. 43059252
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
ATGGGGATCGTTTCTCAAGAGGCGATCAAGCAATTCCAAGCTTTAATGGATCAAGTTGATGAACCACAGAAGAGAACATTTCAGTTGATGGATTGTTTAAACTGGAGGGTACAAAATGAGATGACAATATATTGGCCAGGAGTGCAAGACTCACAGCTCATAGGCCTTTCAGGTTACTCTAGAGAGGTAGTCTATGGATTAAGTACATTTAATAAAGCTTCTTTTCACTACTATGTGCATTCACACATTCAAATAAATGAATATCGAGATCATGTTATTTTGGTTAGTATTAGATCTTGGAGTCTGAAGTTTCTCAAGTCATTTTCTGATATGTGCATTTGGTTGCAGCCCTCTGCATCGAAGAAGTATGGTAAGCCTATCACCACGTGTGTGAAGGTTTTAGATATGACTGGGTTGAAGCTTTTAGCACTAAGCCAAATTAAGTTGTTGACAATTATATCAATAGTTGATGATTTGAACTACCGAGAGAAGACAAATACGTACTGCATTGTAAATGCGCCGTACATATTCTCAGTTTGTTGGAAGGTTGTCAAGCCCCTTTTGCAAGAGAGGATAAGAAAAAGGTACAATTATTCTCTGGTTGTGGTACAGATGAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

207

Amino Acids

24.15

Weight (kDa)

9.16

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 108 - 196 4.7e-10 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018549)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0349911 RchiOBHm_Chr6g0293461 RchiOBHm_Chr7g0228531
rosa_laevigata RLG00000002912
rosa_roxburghii Rroxscaffold_7G00199770
rosa_samantha Rh1AG078400 Rh1CG122900 Rh5BG508100 Rh6CG161700 Rh6CG362500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 14, 57
AcoI YGGCCR 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 326
AcvI CACGTG 1 cut(s) 387
AdeI CACNNNGTG 1 cut(s) 387
AfaI GTAC 6 cut(s) 111, 205, 503, 524, 587, 609
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 3 cut(s) 251, 418, 478
AjnI CCWGG 1 cut(s) 136
AleI CACNNNNGTG 1 cut(s) 389
AluBI AGCT 4 cut(s) 41, 157, 218, 421
AluI AGCT 4 cut(s) 41, 157, 218, 421
AlwI GGATC 2 cut(s) 14, 57
AoxI GGCC 2 cut(s) 134, 163
ApeKI GCWGC 1 cut(s) 346
AspLEI GCGC 1 cut(s) 520
AsuHPI GGTGA 1 cut(s) 373
BalI TGGCCA 1 cut(s) 136
BbrPI CACGTG 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 497
BbvI GCAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 505
BciT130I CCWGG 1 cut(s) 138
BfaI CTAG 1 cut(s) 180
BglII AGATCT 1 cut(s) 293
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 365
BmuI ACTGGG 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 497
BpmI CTGGAG 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 299
BsaAI YACGTR 2 cut(s) 387, 501
Bse1I ACTGG 2 cut(s) 107, 415
BseBI CCWGG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 2 cut(s) 107, 415
BseXI GCAGC 1 cut(s) 358
BshFI GGCC 2 cut(s) 136, 165
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 2 cut(s) 136, 165
Bsp143I GATC 5 cut(s) 6, 24, 49, 268, 293
BspANI GGCC 2 cut(s) 136, 165
BspCNI CTCAG 1 cut(s) 545
BspPI GGATC 2 cut(s) 14, 57
BsrI ACTGG 2 cut(s) 107, 415
BssMI GATC 5 cut(s) 6, 24, 49, 268, 293
Bst2UI CCWGG 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 65
BstBAI YACGTR 2 cut(s) 387, 501
BstDEI CTNAG 2 cut(s) 431, 532
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 5 cut(s) 9, 27, 52, 271, 296
BstMBI GATC 5 cut(s) 6, 24, 49, 268, 293
BstMWI GCNNNNNNNGC 2 cut(s) 142, 562
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSNI TACGTA 1 cut(s) 501
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 2 cut(s) 136, 165
CfoI GCGC 1 cut(s) 520
Csp6I GTAC 6 cut(s) 110, 204, 502, 523, 586, 608
CviAII CATG 1 cut(s) 272
CviQI GTAC 6 cut(s) 110, 204, 502, 523, 586, 608
DdeI CTNAG 2 cut(s) 431, 532
DpnI GATC 5 cut(s) 8, 26, 51, 270, 295
DpnII GATC 5 cut(s) 6, 24, 49, 268, 293
DraI TTTAAA 1 cut(s) 99
DraIII CACNNNGTG 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco105I TACGTA 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 326
Eco72I CACGTG 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 275
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 519
GluI GCNGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 2 cut(s) 136, 165
HhaI GCGC 1 cut(s) 520
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HindIII AAGCTT 3 cut(s) 39, 216, 419
HinfI GANTC 2 cut(s) 149, 301
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 2 cut(s) 306, 328
Hpy188III TCNNGA 3 cut(s) 17, 180, 266
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 2 cut(s) 388, 538
HpyCH4IV ACGT 2 cut(s) 386, 500
HpyCH4V TGCA 7 cut(s) 145, 238, 336, 346, 356, 507, 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 562
HpyF3I CTNAG 2 cut(s) 431, 532
HpySE526I ACGT 2 cut(s) 386, 500
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 1 cut(s) 518
Kzo9I GATC 5 cut(s) 6, 24, 49, 268, 293
LpnPI CCDG 6 cut(s) 88, 123, 150, 156, 396, 584
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 1 cut(s) 365
MaeI CTAG 1 cut(s) 180
MaeII ACGT 2 cut(s) 386, 500
MaeIII GTNAC 1 cut(s) 173
MalI GATC 5 cut(s) 8, 26, 51, 270, 295
MboI GATC 5 cut(s) 6, 24, 49, 268, 293
MboII GAAGA 3 cut(s) 82, 373, 502
MflI RGATCY 1 cut(s) 293
MlsI TGGCCA 1 cut(s) 136
MluCI AATT 4 cut(s) 32, 438, 453, 589
MluNI TGGCCA 1 cut(s) 136
MlyI GAGTC 2 cut(s) 143, 310
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 5 cut(s) 13, 99, 178, 361, 564
Mox20I TGGCCA 1 cut(s) 136
MscI TGGCCA 1 cut(s) 136
MseI TTAA 5 cut(s) 44, 98, 200, 210, 441
MslI CAYNNNNRTG 2 cut(s) 231, 389
Msp20I TGGCCA 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 138
MssI GTTTAAAC 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 238
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 142, 562
NdeII GATC 5 cut(s) 6, 24, 49, 268, 293
NlaIII CATG 1 cut(s) 275
OliI CACNNNNGTG 1 cut(s) 389
PceI AGGCCT 1 cut(s) 165
PctI GAATGC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 348
PleI GAGTC 2 cut(s) 143, 309
PmaCI CACGTG 1 cut(s) 387
PmeI GTTTAAAC 1 cut(s) 99
PmlI CACGTG 1 cut(s) 387
PpsI GAGTC 2 cut(s) 143, 309
Ppu21I YACGTR 2 cut(s) 387, 501
Psp6I CCWGG 1 cut(s) 136
PspCI CACGTG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 6 cut(s) 111, 205, 503, 524, 587, 609
RsaNI GTAC 6 cut(s) 110, 204, 502, 523, 586, 608
RseI CAYNNNNRTG 2 cut(s) 231, 389
SaqAI TTAA 5 cut(s) 44, 98, 200, 210, 441
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 5 cut(s) 6, 24, 49, 268, 293
SchI GAGTC 2 cut(s) 143, 310
ScrFI CCNGG 1 cut(s) 138
SfaNI GCATC 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 231, 389
SmlI CTYRAG 2 cut(s) 15, 314
SmoI CTYRAG 2 cut(s) 15, 314
SnaBI TACGTA 1 cut(s) 501
Sse9I AATT 4 cut(s) 32, 438, 453, 589
SseBI AGGCCT 1 cut(s) 165
SspMI CTAG 1 cut(s) 180
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 136
TaiI ACGT 2 cut(s) 389, 503
TaqI TCGA 2 cut(s) 265, 359
TasI AATT 4 cut(s) 32, 438, 453, 589
TatI WGTACW 1 cut(s) 203
Tru1I TTAA 5 cut(s) 44, 98, 200, 210, 441
Tru9I TTAA 5 cut(s) 44, 98, 200, 210, 441
TseI GCWGC 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 75, 273
XbaI TCTAGA 1 cut(s) 179
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.