Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018549

Physical Location & Seq

Genomic Coordinates Reverse (-)

13133042 .. 13176121

Gene Structure 43080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG078400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTTTCCTTACATATTGGACAGAGATAGATATGTACAAGGGGACCGCCGATACAAAAAGGGATACTGCAAGCACAACCCCAGGGAAATGGTGAAGGAACAGAAAGTAACATTATCACTTATATTGCATGGCTCGCTTCTTTTTCCAGCTCCTTGCTTAAAAATATGTGATTTTGGGTACTCAAAGGTAGGCTGGTGGGTGGATGGCTACCCAAAAGATTCAGATGATCCCATTGGAAGACTCGTGTACTTTCTAAGTCTATGTGGTGGAGGTGGATTCTACTTGCAAGATAATTATCTTCGTATGGAAAGCATCTACATCCCTTCACAGGACTGGTCGCCATCCTCATCTACATCACTGGAGTCTCCGATCTCTGTAGGCTGGTGGGTGGATGGCTACCCAAAAGATTCAGATGATCCCATTGGAAGACTCACATCATCACCATTGGCTTTCCCTATGCAGTTAATTTTGGAACTTGATCCGTACATTGAGGAGCTCACAAAAACAAGAGGTGCCATAAAGGAGTTTGTTAACCCAAACGAGTCTCGAGTTCAAGCCTCCGCTGTCGAACCATTGCCACCAAAGCACCTACCACCCCTAATTCTGCTTCGCCACTCATGTCAAGAAACAGCAACAGGTCATGGTCTGCCCAGTTTGCAACTCCACGTACCTAGAAGGAACTACATTTGCTTGTCTTCTAGAATAAATCAAGATGACGGTGAAGAGTGTCCATGGATGACGTTTATCAGTTGTTCGACTGCTTCAAGTGCGGCATCTCAATTCCATGTAAGCTCTATCTATCATCTTCTTCAAAATAGTAGAATTAGGGATTTAAAATTCGAAGACTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

284

Amino Acids

32.3

Weight (kDa)

5.91

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0349911 RchiOBHm_Chr6g0293461 RchiOBHm_Chr7g0228531
rosa_laevigata	RLG00000002912
rosa_roxburghii	Rroxscaffold_7G00199770
rosa_samantha	Rh1AG078400 Rh1CG122900 Rh5BG508100 Rh6CG161700 Rh6CG362500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	512
AciI	CCGC	3 cut(s)	46, 561, 770
AclWI	GGATC	3 cut(s)	221, 410, 473
AcsI	RAATTY	1 cut(s)	836
AfaI	GTAC	5 cut(s)	36, 179, 248, 485, 669
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	3 cut(s)	554, 765, 812
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	3 cut(s)	149, 496, 792
AluI	AGCT	3 cut(s)	149, 496, 792
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	2 cut(s)	369, 549
AlwI	GGATC	3 cut(s)	221, 410, 473
Ama87I	CYCGRG	1 cut(s)	546
ApoI	RAATTY	1 cut(s)	836
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	103, 432, 731
AsuII	TTCGAA	1 cut(s)	840
AvaI	CYCGRG	1 cut(s)	546
AvaII	GGWCC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	498
BauI	CACGAG	1 cut(s)	242
BbsI	GAAGAC	4 cut(s)	244, 433, 687, 849
Bbv12I	GWGCWC	1 cut(s)	498
BccI	CCATC	3 cut(s)	197, 349, 386
BciT130I	CCWGG	1 cut(s)	82
BciVI	GTATCC	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	369, 549
BfaI	CTAG	2 cut(s)	672, 699
BfmI	CTRYAG	1 cut(s)	375
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	771
BlsI	GCNGC	1 cut(s)	772
Bme1390I	CCNGG	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	43
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	44, 514
BmrFI	CCNGG	1 cut(s)	82
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	2 cut(s)	321, 782
BmuI	ACTGGG	1 cut(s)	645
BpiI	GAAGAC	4 cut(s)	244, 433, 687, 849
BpmI	CTGGAG	1 cut(s)	380
Bpu14I	TTCGAA	1 cut(s)	840
BsaAI	YACGTR	1 cut(s)	667
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	80, 81, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	3 cut(s)	338, 363, 651
Bse3DI	GCAATG	1 cut(s)	572
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	3 cut(s)	80, 81, 731
BseGI	GGATG	5 cut(s)	208, 318, 341, 397, 741
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	572
BseNI	ACTGG	3 cut(s)	338, 363, 651
BseRI	GAGGAG	1 cut(s)	506
BshNI	GGYRCC	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	498
BsiHKCI	CYCGRG	1 cut(s)	546
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	369, 549
BsmFI	GGGAC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	546
Bsp119I	TTCGAA	1 cut(s)	840
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp1407I	TGTACA	1 cut(s)	34
Bsp143I	GATC	4 cut(s)	226, 369, 415, 478
Bsp19I	CCATGG	1 cut(s)	731
BspACI	CCGC	3 cut(s)	46, 561, 770
BspLI	GGNNCC	2 cut(s)	44, 514
BspPI	GGATC	3 cut(s)	221, 410, 473
BspT104I	TTCGAA	1 cut(s)	840
BspT107I	GGYRCC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	572
BsrGI	TGTACA	1 cut(s)	34
BsrI	ACTGG	3 cut(s)	338, 363, 651
BssECI	CCNNGG	3 cut(s)	80, 81, 731
BssMI	GATC	4 cut(s)	226, 369, 415, 478
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	731
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	719
Bst6I	CTCTTC	1 cut(s)	717
BstAUI	TGTACA	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	667
BstBI	TTCGAA	1 cut(s)	840
BstC8I	GCNNGC	2 cut(s)	71, 134
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	731
BstF5I	GGATG	5 cut(s)	208, 318, 341, 397, 741
BstKTI	GATC	4 cut(s)	229, 372, 418, 481
BstMAI	GTCTC	2 cut(s)	369, 549
BstMBI	GATC	4 cut(s)	226, 369, 415, 478
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 583, 655, 767
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	375
BstV2I	GAAGAC	4 cut(s)	244, 433, 687, 849
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	731
BtsCI	GGATG	5 cut(s)	208, 318, 341, 397, 741
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	71, 134
Cfr13I	GGNCC	1 cut(s)	43
Csp6I	GTAC	5 cut(s)	35, 178, 247, 484, 668
CviAII	CATG	5 cut(s)	128, 618, 641, 732, 785
CviQI	GTAC	5 cut(s)	35, 178, 247, 484, 668
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	4 cut(s)	228, 371, 417, 480
DpnII	GATC	4 cut(s)	226, 369, 415, 478
DraI	TTTAAA	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	731
Eco24I	GRGCYC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	496
Eco88I	CYCGRG	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	731
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	731
FaeI	CATG	5 cut(s)	131, 621, 644, 735, 788
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	5 cut(s)	127, 617, 640, 731, 784
Fnu4HI	GCNGC	1 cut(s)	771
FokI	GGATG	5 cut(s)	215, 305, 328, 404, 748
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	1 cut(s)	771
FspBI	CTAG	2 cut(s)	672, 699
GluI	GCNGC	1 cut(s)	771
GsuI	CTGGAG	1 cut(s)	380
Hin1II	CATG	5 cut(s)	131, 621, 644, 735, 788
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	7 cut(s)	218, 240, 276, 362, 407, 429, 542
HpaI	GTTAAC	1 cut(s)	532
HphI	GGTGA	3 cut(s)	103, 432, 731
Hpy166II	GTNNAC	2 cut(s)	247, 532
Hpy188I	TCNGA	3 cut(s)	223, 369, 412
Hpy188III	TCNNGA	4 cut(s)	546, 623, 699, 710
Hpy8I	GTNNAC	2 cut(s)	247, 532
HpyAV	CCTTC	3 cut(s)	88, 333, 669
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	2 cut(s)	666, 740
HpyCH4V	TGCA	5 cut(s)	69, 127, 286, 460, 658
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 583, 655, 767
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	2 cut(s)	666, 740
Hsp92II	CATG	5 cut(s)	131, 621, 644, 735, 788
KspAI	GTTAAC	1 cut(s)	532
Kzo9I	GATC	4 cut(s)	226, 369, 415, 478
LmnI	GCTCC	2 cut(s)	154, 493
LweI	GCATC	2 cut(s)	321, 782
MaeI	CTAG	2 cut(s)	672, 699
MaeII	ACGT	2 cut(s)	666, 740
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	228, 371, 417, 480
MboI	GATC	4 cut(s)	226, 369, 415, 478
MboII	GAAGA	8 cut(s)	249, 290, 438, 687, 734, 797, 800, 854
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	6 cut(s)	292, 465, 600, 779, 822, 836
MlyI	GAGTC	4 cut(s)	234, 371, 423, 551
MnlI	CCTC	5 cut(s)	263, 355, 484, 503, 568
MseI	TTAA	4 cut(s)	158, 464, 531, 833
MspA1I	CMGCKG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	4 cut(s)	133, 583, 655, 767
NcoI	CCATGG	1 cut(s)	731
NdeII	GATC	4 cut(s)	226, 369, 415, 478
NlaIII	CATG	5 cut(s)	131, 621, 644, 735, 788
NlaIV	GGNNCC	2 cut(s)	44, 514
NspV	TTCGAA	1 cut(s)	840
PaeR7I	CTCGAG	1 cut(s)	546
PasI	CCCWGGG	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	218, 276, 407
PkrI	GCNGC	1 cut(s)	772
PleI	GAGTC	4 cut(s)	234, 370, 423, 550
PpsI	GAGTC	4 cut(s)	234, 370, 423, 550
Ppu21I	YACGTR	1 cut(s)	667
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	2 cut(s)	44, 514
PspPI	GGNCC	1 cut(s)	43
RsaI	GTAC	5 cut(s)	36, 179, 248, 485, 669
RsaNI	GTAC	5 cut(s)	35, 178, 247, 484, 668
SacI	GAGCTC	1 cut(s)	498
SaqAI	TTAA	4 cut(s)	158, 464, 531, 833
SatI	GCNGC	1 cut(s)	771
Sau3AI	GATC	4 cut(s)	226, 369, 415, 478
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	4 cut(s)	234, 371, 423, 551
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	498
SfaNI	GCATC	2 cut(s)	321, 782
SfcI	CTRYAG	1 cut(s)	375
Sfr274I	CTCGAG	1 cut(s)	546
SfuI	TTCGAA	1 cut(s)	840
SinI	GGWCC	1 cut(s)	43
SlaI	CTCGAG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
Sse9I	AATT	6 cut(s)	292, 465, 600, 779, 822, 836
SsiI	CCGC	3 cut(s)	46, 561, 770
SspMI	CTAG	2 cut(s)	672, 699
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	731
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	2 cut(s)	669, 743
TaqI	TCGA	4 cut(s)	547, 567, 755, 840
TasI	AATT	6 cut(s)	292, 465, 600, 779, 822, 836
TatI	WGTACW	2 cut(s)	34, 246
TauI	GCSGC	1 cut(s)	773
TfiI	GAWTC	3 cut(s)	218, 276, 407
Tru1I	TTAA	4 cut(s)	158, 464, 531, 833
Tru9I	TTAA	4 cut(s)	158, 464, 531, 833
TscAI	CASTG	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	836
XbaI	TCTAGA	1 cut(s)	698
XhoI	CTCGAG	1 cut(s)	546
XspI	CTAG	2 cut(s)	672, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.