RchiOBHm_Chr6g0293461

transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018549
Physical Location & Seq
Reverse (-)
56142577 .. 56147551
4975 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26331

Sequence Viewer

Length: 219 bp
ATGACTGGGTTGAAGCTTTTAGCACTAAGCCAAATTAAGTTGTTGACAATTATATCAACAATTGATGATTTGAACTACCGAGAGAAGACAAATACGTACTGCATTGTAAATGCGCCGTACATATTCTCAGCTTGTTGGAAGGTTGTCAAGCCCCTTTTGCAGGAAAGGATAAGAAAAAGGTACAATTATTGTCTGGTTGTGGTACAGATGAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

72

Amino Acids

8.4

Weight (kDa)

9.39

Isoelectric Point (pI)

32.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 2 - 63 2.7e-08 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018549)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0349911 RchiOBHm_Chr6g0293461 RchiOBHm_Chr7g0228531
rosa_laevigata RLG00000002912
rosa_roxburghii Rroxscaffold_7G00199770
rosa_samantha Rh1AG078400 Rh1CG122900 Rh5BG508100 Rh6CG161700 Rh6CG362500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 4 cut(s) 98, 119, 182, 204
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 2 cut(s) 13, 73
AluBI AGCT 2 cut(s) 16, 131
AluI AGCT 2 cut(s) 16, 131
AspLEI GCGC 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 100
BmrI ACTGGG 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 92
BsaAI YACGTR 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 140
BsrI ACTGG 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 26, 127
BstENI CCTNNNNNAGG 1 cut(s) 158
BstHHI GCGC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstSNI TACGTA 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 92
CfoI GCGC 1 cut(s) 115
Csp6I GTAC 4 cut(s) 97, 118, 181, 203
CviJI RGCY 4 cut(s) 16, 30, 131, 151
CviKI_1 RGCY 4 cut(s) 16, 30, 131, 151
CviQI GTAC 4 cut(s) 97, 118, 181, 203
DdeI CTNAG 2 cut(s) 26, 127
Eco105I TACGTA 1 cut(s) 96
EcoNI CCTNNNNNAGG 1 cut(s) 158
FaiI YATR 2 cut(s) 53, 122
GlaI GCGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 115
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 45
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 102, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 2 cut(s) 26, 127
HpySE526I ACGT 1 cut(s) 95
HspAI GCGC 1 cut(s) 113
LpnPI CCDG 2 cut(s) 146, 179
MaeII ACGT 1 cut(s) 95
MboII GAAGA 1 cut(s) 97
MfeI CAATTG 1 cut(s) 60
MluCI AATT 4 cut(s) 33, 48, 60, 184
MmeI TCCRAC 1 cut(s) 116
MseI TTAA 1 cut(s) 36
MunI CAATTG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 96
RsaI GTAC 4 cut(s) 98, 119, 182, 204
RsaNI GTAC 4 cut(s) 97, 118, 181, 203
SaqAI TTAA 1 cut(s) 36
SetI ASST 5 cut(s) 18, 98, 133, 144, 182
SgeI CNNG 6 cut(s) 18, 92, 144, 160, 173, 206
SnaBI TACGTA 1 cut(s) 96
Sse9I AATT 4 cut(s) 33, 48, 60, 184
TaiI ACGT 1 cut(s) 98
TasI AATT 4 cut(s) 33, 48, 60, 184
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
XagI CCTNNNNNAGG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.