Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018549

Physical Location & Seq

Genomic Coordinates Reverse (-)

26801063 .. 26803820

Gene Structure 2758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG122900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGTGAAGGTATGGGCTGAGAAAGAAAAGAGGAATCTGGACAGGATGGTGAAAAATGGAATTACATGCCCAACTGCAATTGATATAAAAGATCATGTTCTGGTCATGCTCGGTTGGGTTGAGTGCTCCTCTCATGATACAAACTATGGCATTCATGATTCAATAAAATGGTGTGCTTACGTGTGGCATGCTATAACTGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000462 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007088 GO:0007096 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030490 GO:0030874 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0033043 GO:0034470 GO:0034641 GO:0034660 GO:0036211 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0046777 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1901987 GO:1901990 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

68

Amino Acids

7.88

Weight (kDa)

6.88

Isoelectric Point (pI)

16.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RIO1	PF01163	1 - 36	2.8e-09	RIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0349911 RchiOBHm_Chr6g0293461 RchiOBHm_Chr7g0228531
rosa_laevigata	RLG00000002912
rosa_roxburghii	Rroxscaffold_7G00199770
rosa_samantha	Rh1AG078400 Rh1CG122900 Rh5BG508100 Rh6CG161700 Rh6CG362500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	162
Alw21I	GWGCWC	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	16, 61
Bbv12I	GWGCWC	1 cut(s)	128
BccI	CCATC	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BsaAI	YACGTR	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	10
BspHI	TCATGA	2 cut(s)	133, 154
BsrI	ACTGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstNSI	RCATGY	2 cut(s)	69, 191
BtsCI	GGATG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	189
CciI	TCATGA	2 cut(s)	133, 154
CviAII	CATG	6 cut(s)	66, 95, 106, 134, 155, 188
CviJI	RGCY	1 cut(s)	17
CviKI_1	RGCY	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
FaeI	CATG	6 cut(s)	69, 98, 109, 137, 158, 191
FatI	CATG	6 cut(s)	65, 94, 105, 133, 154, 187
FokI	GGATG	1 cut(s)	58
Hin1II	CATG	6 cut(s)	69, 98, 109, 137, 158, 191
HinfI	GANTC	2 cut(s)	34, 158
HphI	GGTGA	2 cut(s)	16, 61
Hpy188III	TCNNGA	3 cut(s)	38, 134, 155
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	6 cut(s)	69, 98, 109, 137, 158, 191
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	4 cut(s)	23, 28, 86, 183
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	2 cut(s)	60, 78
MnlI	CCTC	2 cut(s)	24, 139
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	150
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	6 cut(s)	69, 98, 109, 137, 158, 191
NspI	RCATGY	2 cut(s)	69, 191
PaeI	GCATGC	1 cut(s)	191
PagI	TCATGA	2 cut(s)	133, 154
PctI	GAATGC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	34, 158
Ppu21I	YACGTR	1 cut(s)	181
Sau3AI	GATC	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	2 cut(s)	12, 183
SphI	GCATGC	1 cut(s)	191
Sse9I	AATT	2 cut(s)	60, 78
TaiI	ACGT	1 cut(s)	183
TasI	AATT	2 cut(s)	60, 78
TfiI	GAWTC	2 cut(s)	34, 158
TspDTI	ATGAA	1 cut(s)	143
XceI	RCATGY	2 cut(s)	69, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.