Rh6CG161700

transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018549
Physical Location & Seq
Forward (+)
21626518 .. 21639210
12693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG161700.1

Sequence Viewer

Length: 572 bp
ATGAATATCGAGATCGTGTTATTTCTCAAGTTATTTTCTGATATGTGCATTTGGTTGCTGCCTTCTGCATCAAAGAAGTATGGTAAACCTATCACCACGTGTGTGAAGGTTTTAGATATGACTGGGTTGAAGCTTTTAGCACTAAGCCAAATTAAGTTGTTGACAATTATATCAACAGTTGATGATTTGAACTACCCAGAGAAGACAAATACGTACTGCATTGTAAATGCGCCGTACATATTCTCAGCTTGTTGGAAGGTTGTCATGCCCCTTTGGCAGGAGAGGATAAAGAAAAAGGTACAATTATTGCCTGGTTGTAGTACAGATGAGTTGTTGAAGAAAGAGGAGCAGAGCAAAATCAAACAGGAGGAGAAAATTATTATCAAGTCGGCTGACAATTTTGCAGATTCACTTGAGACTGACTGTAAAGTTGGCCATTGCAGGTTTGGTCAACAGGGAAGAGGATCAAGGTTTCCAGATATCAAAGAGGATGAGTCTGAGGATGATGACATTGATGCCTATCTTGAAAAGCAAAAGGAGCTGCTTTACCAGAAGGATATTTGTCTTACAAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

190

Amino Acids

21.81

Weight (kDa)

5.6

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 18 - 122 2.1e-12 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018549)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0349911 RchiOBHm_Chr6g0293461 RchiOBHm_Chr7g0228531
rosa_laevigata RLG00000002912
rosa_roxburghii Rroxscaffold_7G00199770
rosa_samantha Rh1AG078400 Rh1CG122900 Rh5BG508100 Rh6CG161700 Rh6CG362500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 432
AclWI GGATC 1 cut(s) 472
AcoI YGGCCR 1 cut(s) 433
AcvI CACGTG 1 cut(s) 99
AdeI CACNNNGTG 1 cut(s) 99
AfaI GTAC 4 cut(s) 215, 236, 300, 322
AfiI CCNNNNNNNGG 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 4 cut(s) 130, 190, 337, 527
AjnI CCWGG 1 cut(s) 310
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 3 cut(s) 133, 248, 541
AluI AGCT 3 cut(s) 133, 248, 541
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 1 cut(s) 472
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 2 cut(s) 58, 541
AspLEI GCGC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 85
BalI TGGCCA 1 cut(s) 435
BbrPI CACGTG 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 45, 528
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 432
BglI GCCNNNNNGGC 1 cut(s) 274
BisI GCNGC 2 cut(s) 59, 542
BlsI GCNGC 2 cut(s) 60, 543
Bme1390I CCNGG 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 312
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 77, 505
BmuI ACTGGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 209
BpuEI CTTGAG 2 cut(s) 11, 434
BsaAI YACGTR 2 cut(s) 99, 213
BsaBI GATNNNNATC 1 cut(s) 519
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 436
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 1 cut(s) 312
BseGI GGATG 2 cut(s) 496, 508
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 258, 489
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 2 cut(s) 359, 383
BseXI GCAGC 2 cut(s) 45, 528
BshFI GGCC 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 410
BsnI GGCC 1 cut(s) 435
Bsp143I GATC 2 cut(s) 12, 464
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 2 cut(s) 257, 490
BspMI ACCTGC 1 cut(s) 432
BspPI GGATC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 436
BsrI ACTGG 1 cut(s) 127
BssMI GATC 2 cut(s) 12, 464
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 178, 425
Bst6I CTCTTC 1 cut(s) 454
BstBAI YACGTR 2 cut(s) 99, 213
BstDEI CTNAG 3 cut(s) 143, 244, 498
BstENI CCTNNNNNAGG 1 cut(s) 275
BstF5I GGATG 2 cut(s) 496, 508
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 2 cut(s) 15, 467
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 2 cut(s) 12, 464
BstMWI GCNNNNNNNGC 2 cut(s) 274, 538
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSNI TACGTA 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 45, 528
BstV2I GAAGAC 1 cut(s) 209
BsuRI GGCC 1 cut(s) 435
BtsCI GGATG 2 cut(s) 496, 508
BveI ACCTGC 1 cut(s) 432
CfoI GCGC 1 cut(s) 232
Csp6I GTAC 4 cut(s) 214, 235, 299, 321
CviAII CATG 1 cut(s) 265
CviJI RGCY 6 cut(s) 133, 147, 248, 392, 435, 541
CviKI_1 RGCY 6 cut(s) 133, 147, 248, 392, 435, 541
CviQI GTAC 4 cut(s) 214, 235, 299, 321
DdeI CTNAG 3 cut(s) 143, 244, 498
DpnI GATC 2 cut(s) 14, 466
DpnII GATC 2 cut(s) 12, 464
DraIII CACNNNGTG 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
Eco105I TACGTA 1 cut(s) 213
Eco32I GATATC 1 cut(s) 481
Eco72I CACGTG 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 310
EcoRV GATATC 1 cut(s) 481
FaeI CATG 1 cut(s) 268
FaiI YATR 6 cut(s) 44, 81, 119, 170, 239, 266
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 59, 542
FokI GGATG 2 cut(s) 503, 515
Fsp4HI GCNGC 2 cut(s) 59, 542
GlaI GCGC 1 cut(s) 231
GluI GCNGC 2 cut(s) 59, 542
HaeIII GGCC 1 cut(s) 435
HhaI GCGC 1 cut(s) 232
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 2 cut(s) 162, 452
HindII GTYRAC 2 cut(s) 162, 452
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 2 cut(s) 407, 494
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 3 cut(s) 86, 162, 452
Hpy188I TCNGA 2 cut(s) 40, 499
Hpy188III TCNNGA 3 cut(s) 10, 476, 524
Hpy8I GTNNAC 3 cut(s) 86, 162, 452
HpyAV CCTTC 4 cut(s) 72, 100, 250, 547
HpyCH4III ACNGT 2 cut(s) 178, 425
HpyCH4IV ACGT 2 cut(s) 98, 212
HpyCH4V TGCA 5 cut(s) 48, 68, 219, 404, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 538
HpyF3I CTNAG 3 cut(s) 143, 244, 498
HpySE526I ACGT 2 cut(s) 98, 212
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 2 cut(s) 12, 464
LmnI GCTCC 2 cut(s) 346, 538
Lsp1109I GCAGC 2 cut(s) 45, 528
LweI GCATC 2 cut(s) 77, 505
MaeII ACGT 2 cut(s) 98, 212
MalI GATC 2 cut(s) 14, 466
MboI GATC 2 cut(s) 12, 464
MboII GAAGA 3 cut(s) 214, 349, 471
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 5 cut(s) 150, 165, 302, 375, 397
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 6 cut(s) 276, 337, 361, 455, 481, 493
Mox20I TGGCCA 1 cut(s) 435
MscI TGGCCA 1 cut(s) 435
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 435
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 274, 538
NdeII GATC 2 cut(s) 12, 464
NlaIII CATG 1 cut(s) 268
OliI CACNNNNGTG 1 cut(s) 101
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 2 cut(s) 60, 543
PleI GAGTC 1 cut(s) 502
PmaCI CACGTG 1 cut(s) 99
PmlI CACGTG 1 cut(s) 99
PpsI GAGTC 1 cut(s) 502
Ppu21I YACGTR 2 cut(s) 99, 213
Psp6I CCWGG 1 cut(s) 310
PspCI CACGTG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 310
RsaI GTAC 4 cut(s) 215, 236, 300, 322
RsaNI GTAC 4 cut(s) 214, 235, 299, 321
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 59, 542
Sau3AI GATC 2 cut(s) 12, 464
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 312
SfaNI GCATC 2 cut(s) 77, 505
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 26, 413
SmoI CTYRAG 2 cut(s) 26, 413
SnaBI TACGTA 1 cut(s) 213
Sse9I AATT 5 cut(s) 150, 165, 302, 375, 397
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 178, 425
TaiI ACGT 2 cut(s) 101, 215
TaqI TCGA 1 cut(s) 9
TasI AATT 5 cut(s) 150, 165, 302, 375, 397
TatI WGTACW 1 cut(s) 320
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 2 cut(s) 58, 541
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.