Rh6CG362500

transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018549
Physical Location & Seq
Reverse (-)
55115071 .. 55120328
5258 bp
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UTR
Exon/CDS
Intron
Rh6CG362500.1

Sequence Viewer

Length: 393 bp
ATGGATCAAGTTGATGAACCACAGAAGAGAACATTTCAGAAACCCATAATTCCAACTGAATTTTACAGAGGAGTGCAAGACTCACAGCTCATAGGCCTTTCGGGTTACTCTAGAGAGCCCTCTGCATCGAAGAAGTATGGTAAACCTATCACCACGTGTGTGAAGGTTTTAGATATGACTGGGTTGAAGCTTTTAGCACTAAGCCAAATTAAGTTGTTGACAATTATATCAACAATTGATGATTTGAACTACCGAGAGAAGACAAATACGTACTGCATTGTAAATGCGCCGTACATATTCTCAGCTTGTTGGAAGGTTGTCAAGCCCCTTTTGCAGGAAAGGATAAGAAAAAGGTACAATTATTGTCTGGTTGTGGTACAGATGAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

130

Amino Acids

14.96

Weight (kDa)

9.34

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 48 - 121 4.7e-11 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018549)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0349911 RchiOBHm_Chr6g0293461 RchiOBHm_Chr7g0228531
rosa_laevigata RLG00000002912
rosa_roxburghii Rroxscaffold_7G00199770
rosa_samantha Rh1AG078400 Rh1CG122900 Rh5BG508100 Rh6CG161700 Rh6CG362500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 59
AcvI CACGTG 1 cut(s) 156
AdeI CACNNNGTG 1 cut(s) 156
AfaI GTAC 4 cut(s) 272, 293, 356, 378
AfiI CCNNNNNNNGG 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 155
AgsI TTSAA 2 cut(s) 187, 247
AleI CACNNNNGTG 1 cut(s) 158
AluBI AGCT 3 cut(s) 88, 190, 305
AluI AGCT 3 cut(s) 88, 190, 305
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 59
AspLEI GCGC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 142
BanII GRGCYC 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 274
BfaI CTAG 1 cut(s) 111
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 266
BsaAI YACGTR 2 cut(s) 156, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 84
BshFI GGCC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 334
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 314
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 184
BssMI GATC 1 cut(s) 4
Bst6I CTCTTC 1 cut(s) 20
BstBAI YACGTR 2 cut(s) 156, 270
BstDEI CTNAG 2 cut(s) 200, 301
BstENI CCTNNNNNAGG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstSNI TACGTA 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 96
CfoI GCGC 1 cut(s) 289
Csp6I GTAC 4 cut(s) 271, 292, 355, 377
CviJI RGCY 7 cut(s) 88, 96, 118, 190, 204, 305, 325
CviKI_1 RGCY 7 cut(s) 88, 96, 118, 190, 204, 305, 325
CviQI GTAC 4 cut(s) 271, 292, 355, 377
DdeI CTNAG 2 cut(s) 200, 301
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 120
Eco72I CACGTG 1 cut(s) 156
EcoNI CCTNNNNNAGG 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 120
FaiI YATR 6 cut(s) 47, 92, 138, 176, 227, 296
FriOI GRGCYC 1 cut(s) 120
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 96
HhaI GCGC 1 cut(s) 289
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 80
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 143, 219
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 111
Hpy8I GTNNAC 2 cut(s) 143, 219
HpyAV CCTTC 2 cut(s) 157, 307
HpyCH4IV ACGT 2 cut(s) 155, 269
HpyCH4V TGCA 4 cut(s) 76, 125, 276, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 2 cut(s) 200, 301
HpySE526I ACGT 2 cut(s) 155, 269
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 165, 320, 353
LweI GCATC 1 cut(s) 134
MaeI CTAG 1 cut(s) 111
MaeII ACGT 2 cut(s) 155, 269
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 3 cut(s) 37, 142, 271
MfeI CAATTG 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 6 cut(s) 48, 59, 207, 222, 234, 358
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 2 cut(s) 77, 290
MnlI CCTC 2 cut(s) 62, 130
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 158
MunI CAATTG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 331
NdeII GATC 1 cut(s) 4
OliI CACNNNNGTG 1 cut(s) 158
PceI AGGCCT 1 cut(s) 96
PleI GAGTC 1 cut(s) 74
PmaCI CACGTG 1 cut(s) 156
PmlI CACGTG 1 cut(s) 156
PpsI GAGTC 1 cut(s) 74
Ppu21I YACGTR 2 cut(s) 156, 270
PspCI CACGTG 1 cut(s) 156
RsaI GTAC 4 cut(s) 272, 293, 356, 378
RsaNI GTAC 4 cut(s) 271, 292, 355, 377
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 120
SetI ASST 9 cut(s) 90, 148, 158, 168, 192, 272, 307, 318, 356
SfaNI GCATC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 158
SnaBI TACGTA 1 cut(s) 270
Sse9I AATT 6 cut(s) 48, 59, 207, 222, 234, 358
SseBI AGGCCT 1 cut(s) 96
SspMI CTAG 1 cut(s) 111
StuI AGGCCT 1 cut(s) 96
TaiI ACGT 2 cut(s) 158, 272
TaqI TCGA 1 cut(s) 128
TasI AATT 6 cut(s) 48, 59, 207, 222, 234, 358
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 30
XagI CCTNNNNNAGG 1 cut(s) 332
XapI RAATTY 1 cut(s) 59
XbaI TCTAGA 1 cut(s) 110
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.