Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018549

Physical Location & Seq

Genomic Coordinates Reverse (-)

80629589 .. 80630670

Gene Structure 1082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG508100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGTGAAGGTATGGGCTGAGAAAGAAAAGAGGAATCTGGACAGGATGGTGATAAATCGAATTACATGCCCAACTGCAATTGATATAAAAGATCATGTTCTGTTAATTTTGGAACTTGGTCCGTACATTGAGGAGCTCACAAAAACAGGAGGTGCCATAAAGGAGTTTGTTAACCCAAAACACAAAGACACTAGTAAGACTTCATTCAAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009555 GO:0009987 GO:0010035 GO:0010038 GO:0010491 GO:0016740 GO:0016772 GO:0016779 GO:0017103 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0033356 GO:0034641 GO:0034654 GO:0042221 GO:0042995 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046398 GO:0046483 GO:0046686 GO:0047338 GO:0047350 GO:0048229 GO:0048856 GO:0050896 GO:0051748 GO:0052573 GO:0055086 GO:0070569 GO:0071704 GO:0090406 GO:0120025 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00053 ko00520 ko01100 ko01130 map00040 map00052 map00053 map00520 map01100 map01130

Pfam Domains

Protein Families

UDPGP

Protein Analysis

71

Amino Acids

8.15

Weight (kDa)

9.17

Isoelectric Point (pI)

22.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RIO1	PF01163	1 - 36	1.7e-06	RIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0349911 RchiOBHm_Chr6g0293461 RchiOBHm_Chr7g0228531
rosa_laevigata	RLG00000002912
rosa_roxburghii	Rroxscaffold_7G00199770
rosa_samantha	Rh1AG078400 Rh1CG122900 Rh5BG508100 Rh6CG161700 Rh6CG362500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	208
AhlI	ACTAGT	1 cut(s)	191
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw21I	GWGCWC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	16, 61
AvaII	GGWCC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BccI	CCATC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BcuI	ACTAGT	1 cut(s)	191
BfaI	CTAG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	154
BseGI	GGATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	9
BseRI	GAGGAG	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	152
BssMI	GATC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstNSI	RCATGY	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	66, 95
CviJI	RGCY	3 cut(s)	17, 136, 211
CviKI_1	RGCY	3 cut(s)	17, 136, 211
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	2 cut(s)	69, 98
FaiI	YATR	5 cut(s)	13, 67, 86, 96, 158
FatI	CATG	2 cut(s)	65, 94
FokI	GGATG	1 cut(s)	58
FriOI	GRGCYC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	192
Hin1II	CATG	2 cut(s)	69, 98
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	1 cut(s)	34
HpaI	GTTAAC	1 cut(s)	172
HphI	GGTGA	2 cut(s)	16, 61
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	69, 98
KspAI	GTTAAC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	3 cut(s)	23, 28, 132
MaeI	CTAG	1 cut(s)	192
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	3 cut(s)	60, 78, 105
MnlI	CCTC	3 cut(s)	24, 124, 143
MseI	TTAA	2 cut(s)	104, 171
MunI	CAATTG	1 cut(s)	78
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	69, 98
NlaIV	GGNNCC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	119
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	104, 171
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	3 cut(s)	12, 138, 154
SgeI	CNNG	7 cut(s)	50, 55, 78, 107, 128, 159, 204
SinI	GGWCC	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	191
Sse9I	AATT	3 cut(s)	60, 78, 105
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	138
TaqI	TCGA	1 cut(s)	58
TasI	AATT	3 cut(s)	60, 78, 105
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	104, 171
Tru9I	TTAA	2 cut(s)	104, 171
TspDTI	ATGAA	1 cut(s)	192
TspGWI	ACGGA	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	119
XceI	RCATGY	1 cut(s)	69
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.