RchiOBHm_Chr1g0351221

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018473
Physical Location & Seq
Reverse (-)
44466747 .. 44467697
951 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGGCACGATTCAATACAGCGAGTCTTGGTTTGGTGATTGTCTTTTTCGTTTTTCCGAGCATGGTGTTGAGTGCACAATATTGGGTCGGAGACGATGATATTGGCTGGGGAACTTTTGGAGAAGATTACATGAGGTGGGCTGCTAGCAAAAATTTCCATGTCGGAGATGTTCTCATCTTCAGCTATGATGCAAAAATACACAATCTTGTTGTAGCAGCTAATAGTGACCTATATGAGCAATGTAATTACACTCCAAACTTGGGAGTGTATCAGAGCGGCTTCGACTCTTTAACTTTGCCGGTTGCTGGGACGTATTATTTCTTCTGTTCATATCATTGCCACCCATTCGCAATGAAATTTTACATTAATGTAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

125

Amino Acids

14.19

Weight (kDa)

4.97

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 112 9.1e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018473)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12400 FvH4_7g12410
rosa_chinensis RchiOBHm_Chr1g0351221
rosa_roxburghii Rroxscaffold_4G00303960 Rroxscaffold_4G00303970
rosa_rugosa Rorug01G0217000
rosa_samantha Rh1BG201500 Rh1CG215700 Rh1DG228900
rosa_wichuraiana Rw1G020110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 276
AciI CCGC 1 cut(s) 276
AcsI RAATTY 2 cut(s) 151, 356
AcuI CTGAAG 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 260, 305
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 2 cut(s) 183, 218
AluI AGCT 2 cut(s) 183, 218
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 72
ApaLI GTGCAC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 140, 215
ApoI RAATTY 2 cut(s) 151, 356
AseI ATTAAT 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 46
AsuNHI GCTAGC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 76
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 127, 227
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 144, 376
BisI GCNGC 3 cut(s) 141, 216, 277
BlsI GCNGC 3 cut(s) 142, 217, 278
BmsI GCATC 1 cut(s) 178
BmtI GCTAGC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 156, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 305
Bse118I RCCGGY 1 cut(s) 298
Bse3DI GCAATG 3 cut(s) 245, 334, 357
BseLI CCNNNNNNNGG 2 cut(s) 260, 305
BseMI GCAATG 3 cut(s) 245, 334, 357
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 2 cut(s) 127, 227
BseYI CCCAGC 2 cut(s) 105, 305
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 2 cut(s) 260, 305
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 76
BspACI CCGC 1 cut(s) 276
BspOI GCTAGC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 276
BsrDI GCAATG 3 cut(s) 245, 334, 357
BsrFI RCCGGY 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 127, 227
Cac8I GCNNGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 298
CviAII CATG 3 cut(s) 61, 130, 158
CviJI RGCY 5 cut(s) 105, 140, 183, 218, 279
CviKI_1 RGCY 5 cut(s) 105, 140, 183, 218, 279
Eco57I CTGAAG 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 3 cut(s) 64, 133, 161
FaiI YATR 7 cut(s) 62, 131, 159, 186, 232, 234, 331
FaqI GGGAC 1 cut(s) 322
FatI CATG 3 cut(s) 60, 129, 157
Fnu4HI GCNGC 3 cut(s) 141, 216, 277
Fsp4HI GCNGC 3 cut(s) 141, 216, 277
FspBI CTAG 2 cut(s) 144, 376
GluI GCNGC 3 cut(s) 141, 216, 277
GsaI CCCAGC 2 cut(s) 109, 309
HapII CCGG 1 cut(s) 299
Hin1II CATG 3 cut(s) 64, 133, 161
HinfI GANTC 3 cut(s) 9, 22, 284
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 4 cut(s) 57, 89, 164, 273
Hpy8I GTNNAC 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 74, 191
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 3 cut(s) 64, 133, 161
LpnPI CCDG 3 cut(s) 91, 291, 312
Lsp1109I GCAGC 2 cut(s) 127, 227
LweI GCATC 1 cut(s) 178
MaeI CTAG 2 cut(s) 144, 376
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 224, 370
MbiI CCGCTC 1 cut(s) 276
MboII GAAGA 3 cut(s) 134, 169, 313
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 3 cut(s) 151, 244, 356
MlyI GAGTC 2 cut(s) 31, 278
MmeI TCCRAC 2 cut(s) 67, 142
MnlI CCTC 1 cut(s) 126
MseI TTAA 2 cut(s) 290, 366
MspI CCGG 1 cut(s) 299
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 3 cut(s) 64, 133, 161
NmuCI GTSAC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 3 cut(s) 142, 217, 278
PleI GAGTC 2 cut(s) 30, 278
PpsI GAGTC 2 cut(s) 30, 278
PshBI ATTAAT 1 cut(s) 366
PspFI CCCAGC 2 cut(s) 105, 305
SaqAI TTAA 2 cut(s) 290, 366
SatI GCNGC 3 cut(s) 141, 216, 277
SchI GAGTC 2 cut(s) 31, 278
SduI GDGCHC 1 cut(s) 76
SetI ASST 6 cut(s) 137, 185, 220, 231, 314, 377
SfaNI GCATC 1 cut(s) 178
Sse9I AATT 3 cut(s) 151, 244, 356
SsiI CCGC 1 cut(s) 276
SspI AATATT 1 cut(s) 80
SspMI CTAG 2 cut(s) 144, 376
TaiI ACGT 1 cut(s) 314
TaqI TCGA 1 cut(s) 282
TasI AATT 3 cut(s) 151, 244, 356
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 2 cut(s) 290, 366
Tru9I TTAA 2 cut(s) 290, 366
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 140, 215
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 318, 368
VneI GTGCAC 1 cut(s) 72
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 2 cut(s) 151, 356
XspI CTAG 2 cut(s) 144, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.