RchiOBHm_Chr1g0363421

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014337
Physical Location & Seq
Forward (+)
54836885 .. 54838343
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 924 bp
ATGTTGGTTGCTGTACTAACCATCCAACCCAACAACCCCAAAACCAACCCAATAAGTAACTCTCTACTCTCTTCTACTCCAAACCTCCTCCCTCTCACTCTTTTCACTCTTGTTGTTTCGCTTCCTCCATTTTCTCCGGCCCAAAAAATGCCGCACCCGATTTCGGAGGCCAACGAGCAGAGCCCCTTTGGCGCCTTAACCGCCGAAGAGTTCTACTCCCGCCACTCCGTCTCCCACGGCTCCGACTACCTCACCAACCCCAGAGGCCTCAAGCTCTTCACTCAGTGGTGGACCCCGCTCCCTCCGGCGGAGGTCCTCGGCGTCCTCGCCGTCGTCCACGGCTTCACCGGCGAGACCAGCTGGTTCGTCCAGCTCACCGCCGTCCACTTCGCCAAGGCCGGCTTCGCCGTCTGCGCCATCGACCACCAGGGCCACGGCTTCTCCGACGGCCTCGTCGCCCACATCCCCGACGTCAACCCCGTCGTCGACGACTGCATTTCCTTCTTCGAGTCCTTCCGCGCTCGCCACGCTCCGTCGCTGCCGTCCTTCCTGTACGCCGAGTCCCTCGGCGGCGCGATCGCGATTCTCCTAGCGCTGTCCAGCCCGAGGAGGCCGCTCGCCAAGCCACGCGCCGCCACGGCTCTTGAGCTGCTCAGAGTCTGCAAGGAGGTGCAGGGGAAGTTCGAGGAGGTGGAGGTGCCGCTGCTGATCGTCCACGGCGGAGAGGACGTAGTTTGCGACCCCGCGTGCGTGGAGGAGCTCTACAAGCGCGCGTCGAGTAAGGACAAGACCCTCAGGATCCACCCCGGCATGTGGCACCAGTTGATCGGTGAGACCCCGGAGAACGTAGAGTTGGTTTTCGGAGAAATGGTGGACTGGCTTCGAACCAGAGCCGCACGCGCCGCCGATAATGGTGGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

307

Amino Acids

33.38

Weight (kDa)

5.82

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 105 - 203 4.7e-24 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 109 - 203 6.3e-06 alpha/beta hydrolase fold
Hydrolase_4 PF12146 207 - 279 7.3e-18 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14980 AT5G19290
fragaria_vesca FvH4_7g19610
malus_domestica MD01G1108700.v1.1 MD07G1174800.v1.1
prunus_persica Prupe.2G213900_v2.0.a1
pyrus_communis pycom01g13570 pycom07g16920
rosa_chinensis RchiOBHm_Chr1g0363421
rosa_laevigata RLG00000027569
rosa_multiflora Rmu_sc0000339.1_g000010 Rmu_sc0004458.1_g000006
rosa_rugosa Rorug01G0306600
rosa_samantha Rh1AG315700 Rh1CG295400 Rh1DG310100
rosa_wichuraiana Rw1G027960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 452
AatII GACGTC 1 cut(s) 474
AccB1I GGYRCC 4 cut(s) 191, 697, 816, 917
AccBSI CCGCTC 2 cut(s) 298, 616
AccI GTMKAC 1 cut(s) 486
AccII CGCG 8 cut(s) 519, 575, 581, 630, 746, 771, 773, 900
AclWI GGATC 2 cut(s) 793, 806
AcyI GRCGYC 3 cut(s) 192, 321, 471
AdeI CACNNNGTG 1 cut(s) 285
AfaI GTAC 2 cut(s) 15, 554
AfeI AGCGCT 1 cut(s) 594
AfiI CCNNNNNNNGG 4 cut(s) 163, 307, 606, 813
AjnI CCWGG 1 cut(s) 426
AjuI GAANNNNNNNTTGG 4 cut(s) 386, 418, 836, 868
AluBI AGCT 5 cut(s) 274, 360, 373, 649, 760
AluI AGCT 5 cut(s) 274, 360, 373, 649, 760
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 3 cut(s) 235, 347, 827
AlwI GGATC 2 cut(s) 793, 806
AlwNI CAGNNNCTG 1 cut(s) 660
Ama87I CYCGRG 1 cut(s) 604
Aor51HI AGCGCT 1 cut(s) 594
AoxI GGCC 7 cut(s) 138, 168, 265, 396, 430, 448, 611
ApeKI GCWGC 3 cut(s) 538, 649, 703
AsiSI GCGATCGC 1 cut(s) 579
AspLEI GCGC 9 cut(s) 194, 416, 521, 575, 595, 632, 771, 773, 902
AspS9I GGNCC 4 cut(s) 139, 291, 313, 430
AsuC2I CCSGG 2 cut(s) 807, 839
AsuHPI GGTGA 4 cut(s) 244, 337, 367, 842
AsuII TTCGAA 1 cut(s) 883
AvaI CYCGRG 1 cut(s) 604
AvaII GGWCC 2 cut(s) 291, 313
AxyI CCTNAGG 1 cut(s) 794
BamHI GGATCC 1 cut(s) 798
BanI GGYRCC 4 cut(s) 191, 697, 816, 917
BanII GRGCYC 2 cut(s) 185, 762
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 3 cut(s) 525, 636, 690
BccI CCATC 2 cut(s) 29, 425
BciT130I CCWGG 1 cut(s) 428
BcnI CCSGG 2 cut(s) 807, 839
BcoDI GTCTC 3 cut(s) 235, 347, 827
BfaI CTAG 2 cut(s) 590, 922
BfoI RGCGCY 2 cut(s) 195, 596
BglI GCCNNNNNGGC 2 cut(s) 189, 638
Bme1390I CCNGG 3 cut(s) 428, 807, 839
Bme18I GGWCC 2 cut(s) 291, 313
BmeT110I CYCGRG 1 cut(s) 604
BmgT120I GGNCC 4 cut(s) 139, 291, 313, 430
BmiI GGNNCC 7 cut(s) 193, 241, 293, 699, 800, 818, 919
BmrFI CCNGG 3 cut(s) 428, 807, 839
BplI GAGNNNNNCTC 2 cut(s) 200, 232
Bpu14I TTCGAA 1 cut(s) 883
BpuEI CTTGAG 2 cut(s) 254, 665
BpuMI CCSGG 2 cut(s) 807, 839
BsaHI GRCGYC 3 cut(s) 192, 321, 471
BsaI GGTCTC 2 cut(s) 347, 827
BsaXI ACNNNNNCTCC 8 cut(s) 215, 245, 425, 455, 714, 744, 855, 885
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 307, 606, 813
Bse118I RCCGGY 2 cut(s) 347, 398
Bse1I ACTGG 2 cut(s) 820, 881
Bse21I CCTNAGG 1 cut(s) 794
BseBI CCWGG 1 cut(s) 428
BseGI GGATG 2 cut(s) 21, 462
BseLI CCNNNNNNNGG 4 cut(s) 163, 307, 606, 813
BseMII CTCAG 3 cut(s) 296, 667, 808
BseNI ACTGG 2 cut(s) 820, 881
BsePI GCGCGC 1 cut(s) 769
BseRI GAGGAG 4 cut(s) 77, 622, 701, 770
BseXI GCAGC 3 cut(s) 525, 636, 690
BsgI GTGCAG 1 cut(s) 692
Bsh1236I CGCG 8 cut(s) 519, 575, 581, 630, 746, 771, 773, 900
Bsh1285I CGRYCG 1 cut(s) 579
BshFI GGCC 7 cut(s) 140, 170, 267, 398, 432, 450, 613
BshNI GGYRCC 4 cut(s) 191, 697, 816, 917
BsiEI CGRYCG 1 cut(s) 579
BsiHKAI GWGCWC 1 cut(s) 762
BsiHKCI CYCGRG 1 cut(s) 604
BsiSI CCGG 6 cut(s) 137, 305, 348, 399, 807, 839
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 4 cut(s) 163, 307, 606, 813
BsmAI GTCTC 3 cut(s) 235, 347, 827
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 7 cut(s) 140, 170, 267, 398, 432, 450, 613
Bso31I GGTCTC 2 cut(s) 347, 827
BsoBI CYCGRG 1 cut(s) 604
Bsp119I TTCGAA 1 cut(s) 883
Bsp1286I GDGCHC 2 cut(s) 185, 762
Bsp143I GATC 4 cut(s) 576, 708, 798, 825
Bsp68I TCGCGA 1 cut(s) 581
BspANI GGCC 7 cut(s) 140, 170, 267, 398, 432, 450, 613
BspCNI CTCAG 3 cut(s) 295, 666, 807
BspFNI CGCG 8 cut(s) 519, 575, 581, 630, 746, 771, 773, 900
BspLI GGNNCC 7 cut(s) 193, 241, 293, 699, 800, 818, 919
BspPI GGATC 2 cut(s) 793, 806
BspQI GCTCTTC 1 cut(s) 281
BspT104I TTCGAA 1 cut(s) 883
BspT107I GGYRCC 4 cut(s) 191, 697, 816, 917
BspTNI GGTCTC 2 cut(s) 347, 827
BsrBI CCGCTC 2 cut(s) 298, 616
BsrFI RCCGGY 2 cut(s) 347, 398
BsrI ACTGG 2 cut(s) 820, 881
BssAI RCCGGY 2 cut(s) 347, 398
BssHII GCGCGC 1 cut(s) 769
BssMI GATC 4 cut(s) 576, 708, 798, 825
BssNI GRCGYC 3 cut(s) 192, 321, 471
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 428
Bst6I CTCTTC 3 cut(s) 76, 201, 281
BstACI GRCGYC 3 cut(s) 192, 321, 471
BstBI TTCGAA 1 cut(s) 883
BstC8I GCNNGC 6 cut(s) 400, 523, 618, 748, 771, 898
BstDEI CTNAG 3 cut(s) 282, 653, 794
BstDSI CCRYGG 5 cut(s) 235, 337, 433, 636, 715
BstF5I GGATG 2 cut(s) 21, 462
BstFNI CGCG 8 cut(s) 519, 575, 581, 630, 746, 771, 773, 900
BstH2I RGCGCY 2 cut(s) 195, 596
BstHHI GCGC 9 cut(s) 194, 416, 521, 575, 595, 632, 771, 773, 902
BstKTI GATC 4 cut(s) 579, 711, 801, 828
BstMAI GTCTC 3 cut(s) 235, 347, 827
BstMBI GATC 4 cut(s) 576, 708, 798, 825
BstMCI CGRYCG 1 cut(s) 579
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 814
BstSCI CCNGG 3 cut(s) 426, 805, 837
BstUI CGCG 8 cut(s) 519, 575, 581, 630, 746, 771, 773, 900
BstV1I GCAGC 3 cut(s) 525, 636, 690
BstX2I RGATCY 1 cut(s) 798
BstYI RGATCY 1 cut(s) 798
Bsu36I CCTNAGG 1 cut(s) 794
BsuRI GGCC 7 cut(s) 140, 170, 267, 398, 432, 450, 613
BtgI CCRYGG 5 cut(s) 235, 337, 433, 636, 715
BtsCI GGATG 2 cut(s) 21, 462
BtsIMutI CAGTG 1 cut(s) 290
BtuMI TCGCGA 1 cut(s) 581
Cac8I GCNNGC 6 cut(s) 400, 523, 618, 748, 771, 898
CaiI CAGNNNCTG 1 cut(s) 660
CfoI GCGC 9 cut(s) 194, 416, 521, 575, 595, 632, 771, 773, 902
Cfr10I RCCGGY 2 cut(s) 347, 398
Cfr13I GGNCC 4 cut(s) 139, 291, 313, 430
CseI GACGC 2 cut(s) 310, 762
Csp6I GTAC 2 cut(s) 14, 553
CspCI CAANNNNNGTGG 2 cut(s) 625, 660
CviAII CATG 1 cut(s) 811
CviQI GTAC 2 cut(s) 14, 553
DdeI CTNAG 3 cut(s) 282, 653, 794
DinI GGCGCC 1 cut(s) 193
DpnI GATC 4 cut(s) 578, 710, 800, 827
DpnII GATC 4 cut(s) 576, 708, 798, 825
DraIII CACNNNGTG 1 cut(s) 285
DrdI GACNNNNNNGTC 1 cut(s) 452
DseDI GACNNNNNNGTC 1 cut(s) 452
Eam1104I CTCTTC 3 cut(s) 76, 201, 281
EarI CTCTTC 3 cut(s) 76, 201, 281
EciI GGCGGA 2 cut(s) 323, 735
Ecl136II GAGCTC 1 cut(s) 760
Eco130I CCWWGG 1 cut(s) 393
Eco147I AGGCCT 1 cut(s) 267
Eco24I GRGCYC 2 cut(s) 185, 762
Eco31I GGTCTC 2 cut(s) 347, 827
Eco47I GGWCC 2 cut(s) 291, 313
Eco47III AGCGCT 1 cut(s) 594
Eco53kI GAGCTC 1 cut(s) 760
Eco81I CCTNAGG 1 cut(s) 794
Eco88I CYCGRG 1 cut(s) 604
EcoICRI GAGCTC 1 cut(s) 760
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 393
EcoT38I GRGCYC 2 cut(s) 185, 762
EgeI GGCGCC 1 cut(s) 193
EheI GGCGCC 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 1 cut(s) 814
FaiI YATR 1 cut(s) 812
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 547
FatI CATG 1 cut(s) 810
FauI CCCGC 3 cut(s) 227, 303, 751
FblI GTMKAC 1 cut(s) 486
FokI GGATG 2 cut(s) 8, 449
FriOI GRGCYC 2 cut(s) 185, 762
FspBI CTAG 2 cut(s) 590, 922
GlaI GCGC 9 cut(s) 193, 415, 520, 574, 594, 631, 770, 772, 901
HaeII RGCGCY 2 cut(s) 195, 596
HaeIII GGCC 7 cut(s) 140, 170, 267, 398, 432, 450, 613
HapII CCGG 6 cut(s) 137, 305, 348, 399, 807, 839
HgaI GACGC 2 cut(s) 310, 762
HhaI GCGC 9 cut(s) 194, 416, 521, 575, 595, 632, 771, 773, 902
Hin1I GRCGYC 3 cut(s) 192, 321, 471
Hin1II CATG 1 cut(s) 814
Hin6I GCGC 9 cut(s) 192, 414, 519, 573, 593, 630, 769, 771, 900
HinP1I GCGC 9 cut(s) 192, 414, 519, 573, 593, 630, 769, 771, 900
HincII GTYRAC 2 cut(s) 475, 487
HindII GTYRAC 2 cut(s) 475, 487
HinfI GANTC 4 cut(s) 509, 560, 583, 657
HpaII CCGG 6 cut(s) 137, 305, 348, 399, 807, 839
HphI GGTGA 4 cut(s) 244, 337, 367, 842
Hpy166II GTNNAC 7 cut(s) 291, 337, 385, 475, 487, 715, 874
Hpy188I TCNGA 5 cut(s) 166, 244, 445, 656, 863
Hpy188III TCNNGA 3 cut(s) 580, 644, 796
Hpy8I GTNNAC 7 cut(s) 291, 337, 385, 475, 487, 715, 874
Hpy99I CGWCG 9 cut(s) 335, 449, 458, 473, 485, 488, 491, 538, 778
HpyAV CCTTC 3 cut(s) 511, 523, 556
HpyCH4IV ACGT 3 cut(s) 471, 729, 846
HpyCH4V TGCA 3 cut(s) 495, 663, 673
HpyF3I CTNAG 3 cut(s) 282, 653, 794
HpySE526I ACGT 3 cut(s) 471, 729, 846
Hsp92I GRCGYC 3 cut(s) 192, 321, 471
Hsp92II CATG 1 cut(s) 814
HspAI GCGC 9 cut(s) 192, 414, 519, 573, 593, 630, 769, 771, 900
KasI GGCGCC 1 cut(s) 191
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
Kzo9I GATC 4 cut(s) 576, 708, 798, 825
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 4 cut(s) 245, 303, 535, 757
Lsp1109I GCAGC 3 cut(s) 525, 636, 690
MaeI CTAG 2 cut(s) 590, 922
MaeII ACGT 3 cut(s) 471, 729, 846
MaeIII GTNAC 1 cut(s) 56
MalI GATC 4 cut(s) 578, 710, 800, 827
MbiI CCGCTC 2 cut(s) 298, 616
MboI GATC 4 cut(s) 576, 708, 798, 825
MboII GAAGA 4 cut(s) 63, 218, 268, 496
MflI RGATCY 1 cut(s) 798
MhlI GDGCHC 2 cut(s) 185, 762
Mly113I GGCGCC 1 cut(s) 192
MlyI GAGTC 3 cut(s) 518, 569, 666
MmeI TCCRAC 3 cut(s) 49, 267, 468
MroNI GCCGGC 1 cut(s) 398
MseI TTAA 1 cut(s) 197
MspA1I CMGCKG 2 cut(s) 360, 703
MspI CCGG 6 cut(s) 137, 305, 348, 399, 807, 839
MspR9I CCNGG 3 cut(s) 428, 807, 839
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 8 cut(s) 519, 575, 581, 630, 746, 771, 773, 900
NaeI GCCGGC 1 cut(s) 400
NarI GGCGCC 1 cut(s) 192
NciI CCSGG 2 cut(s) 807, 839
NdeII GATC 4 cut(s) 576, 708, 798, 825
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 1 cut(s) 814
NlaIV GGNNCC 7 cut(s) 193, 241, 293, 699, 800, 818, 919
NmeAIII GCCGAG 3 cut(s) 297, 546, 583
NruI TCGCGA 1 cut(s) 581
NspI RCATGY 1 cut(s) 814
NspV TTCGAA 1 cut(s) 883
PauI GCGCGC 1 cut(s) 769
PceI AGGCCT 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 3 cut(s) 441, 477, 735
PdiI GCCGGC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 583
Ple19I CGATCG 1 cut(s) 579
PleI GAGTC 3 cut(s) 517, 568, 665
PluTI GGCGCC 1 cut(s) 195
PpsI GAGTC 3 cut(s) 517, 568, 665
PpuMI RGGWCCY 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 762
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 7 cut(s) 193, 241, 293, 699, 800, 818, 919
PspPI GGNCC 4 cut(s) 139, 291, 313, 430
PspPPI RGGWCCY 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 660
PsuI RGATCY 1 cut(s) 798
PteI GCGCGC 1 cut(s) 769
PvuI CGATCG 1 cut(s) 579
PvuII CAGCTG 1 cut(s) 360
RgaI GCGATCGC 1 cut(s) 579
RruI TCGCGA 1 cut(s) 581
RsaI GTAC 2 cut(s) 15, 554
RsaNI GTAC 2 cut(s) 14, 553
SacI GAGCTC 1 cut(s) 762
SalI GTCGAC 1 cut(s) 485
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 197
Sau3AI GATC 4 cut(s) 576, 708, 798, 825
Sau96I GGNCC 4 cut(s) 139, 291, 313, 430
SchI GAGTC 3 cut(s) 518, 569, 666
ScrFI CCNGG 3 cut(s) 428, 807, 839
SduI GDGCHC 2 cut(s) 185, 762
SfaAI GCGATCGC 1 cut(s) 579
SfoI GGCGCC 1 cut(s) 193
SfuI TTCGAA 1 cut(s) 883
SgfI GCGATCGC 1 cut(s) 579
SgrAI CRCCGGYG 1 cut(s) 347
SgrDI CGTCGACG 1 cut(s) 485
SinI GGWCC 2 cut(s) 291, 313
SmlI CTYRAG 2 cut(s) 269, 644
SmoI CTYRAG 2 cut(s) 269, 644
SseBI AGGCCT 1 cut(s) 267
SspDI GGCGCC 1 cut(s) 191
SspMI CTAG 2 cut(s) 590, 922
SstI GAGCTC 1 cut(s) 762
StuI AGGCCT 1 cut(s) 267
StyD4I CCNGG 3 cut(s) 426, 805, 837
StyI CCWWGG 1 cut(s) 393
TaiI ACGT 3 cut(s) 474, 732, 849
TaqI TCGA 6 cut(s) 420, 486, 507, 684, 776, 883
TatI WGTACW 1 cut(s) 13
TauI GCSGC 7 cut(s) 154, 573, 616, 635, 703, 896, 905
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 290
TseI GCWGC 3 cut(s) 538, 649, 703
TspGWI ACGGA 2 cut(s) 217, 522
TspRI CASTG 1 cut(s) 290
VpaK11BI GGWCC 2 cut(s) 291, 313
XceI RCATGY 1 cut(s) 814
XmiI GTMKAC 1 cut(s) 486
XspI CTAG 2 cut(s) 590, 922
ZraI GACGTC 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.