RchiOBHm_Chr1g0366481

SLT1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007681
Physical Location & Seq
Reverse (-)
56987120 .. 56989914
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1446 bp
ATGGATTCTGGTTCTTTGGCACATGATGAATTGGAGAGAGAGATGAATCGGACCTTCATACTTTCGCGCCCTCCTGATATCAATCTCCCATTGCTGTCTGAACCAAGCCCACCTCCTCCAACTTGGAATGATCCATGTGACATCTTGGATGTAGGCCTTGGGTCTCAAGTGTATGAAGCTGAGACAACAATCAGTCTCCCCAAAGTCGCAAGGAAATGCAACAAGAGACTCGATAGTGTTTGGGGTGCATGGTTTTTCTTTAGCTTCTATTTCAAGCCTGTTTTGAACGAGAAGTCTAAGTGCAAGATCATTCGGGACAGTAATGGGGTGTCTGGGTTTGACAAAACAGACTTGCAGCTAGATGCTTTCCTGGTTCAGCATGATATGGAAAACATGTACATGTGGGTTTTCAAGGAAAGGCCTGAAAATGCATTGGGGAAGATGCAGCTGAGGAGTTACATGAATGGGCATTCTCGCCAAGGAGAGCGGCCCTTCCCATTTAGTGTGGACAGAGGTTTTGTGCGGTCTCATCGAATGCAGAGGAAGCACTACAGGGGTCTCTCTAACCCTCAATGTGTTCATGGGATTGAAATTGTTAGGACACCCAACCTCATGTGTCTTGATGACGAAGAGAGGAAGAGGTGGACAGAGCTTACAGGCCGAGATGTAAACTTCTCAATCCCGCTTGAAGCGAGTGATTTTGGTTCTTGGAGGAACATACAGAATCCCGAACTTGAGCTTGACCGGCCTGCCCCTCCATCAAAGAACAATATAAATTCTCATCAAAGAAAATTGCTTGATGGTACTGGTTTGAATTTGTCAACTCAGCCATCAGACCATGGAAACAGTGATGGAATGGACCTGTCACCGGTCTGCCATAAGCGAAAGAAAGAACTCTTTCCTCATGGAAATGACAATGATTGCTGTTTACCCAATAACCACCATTTTGACAGAGTTTTGGATGGCAAAATCCACACAGATGAGTCATCTTGGTTTAATGAGTTTAGTGGGGCAATGAAGAATGCATCTGGGCCGGTTACAGCTGCAAAGACAATATACGAGGACGATGAAGGGTTTTTGGTCATTGTCAGCTTACCTTTTGTAGATCTTCAAAGGGTTAAAGTTACTTGGAGGAATACTAATTCACATGGGATTGTAAAGATATCTTGTGTGAGTACAGCTTGTATGCCATTCATTAAGAGGCGTGATAGAACATTTAAGCTAACAGATCTGGCACCAGAGCACTGTCCTCCTGGGGAATTTGTCAGGGAAATTGCTCTTCCAACTCGCATTCCAGAAGATGCCAAACTGGAAGCGTATTGTGATGAGACAGGAACAATGCTCGAAGTTATGGTGCCCAAACGTCGAGTAGGACCTGAAGAACACGAGGTCCGTGTGTGCCTCCGCCCCTCTCCCTGGAACGAAAGGGAGCATTTGTTGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

481

Amino Acids

55.11

Weight (kDa)

6.21

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 72 - 238 8.5e-104 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 346 - 454 2.7e-59 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1234, 1354
AccBSI CCGCTC 1 cut(s) 487
AccII CGCG 1 cut(s) 67
AciI CCGC 4 cut(s) 487, 523, 683, 1405
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 3 cut(s) 775, 814, 1259
AcuI CTGAAG 1 cut(s) 1398
AfaI GTAC 3 cut(s) 398, 805, 1177
AfiI CCNNNNNNNGG 2 cut(s) 868, 1416
AflIII ACRYGT 2 cut(s) 393, 399
AgeI ACCGGT 1 cut(s) 868
AgsI TTSAA 7 cut(s) 274, 286, 412, 590, 689, 814, 1112
AjnI CCWGG 3 cut(s) 369, 1252, 1415
AloI GAACNNNNNNTCC 2 cut(s) 1374, 1406
Alw21I GWGCWC 1 cut(s) 1245
Alw26I GTCTC 7 cut(s) 168, 176, 200, 220, 531, 563, 1322
AlwI GGATC 1 cut(s) 125
AoxI GGCC 6 cut(s) 154, 419, 488, 658, 746, 1031
ApeKI GCWGC 3 cut(s) 355, 445, 1043
ApoI RAATTY 3 cut(s) 775, 814, 1259
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
AsiGI ACCGGT 1 cut(s) 868
Asp700I GAANNNNTTC 1 cut(s) 897
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 6 cut(s) 51, 489, 859, 1031, 1373, 1390
AsuHPI GGTGA 1 cut(s) 858
AvaII GGWCC 4 cut(s) 51, 859, 1373, 1390
BaeGI GKGCMC 1 cut(s) 1359
BanI GGYRCC 2 cut(s) 1234, 1354
BauI CACGAG 1 cut(s) 1385
Bbv12I GWGCWC 1 cut(s) 1245
BbvCI CCTCAGC 1 cut(s) 449
BbvI GCAGC 3 cut(s) 367, 457, 1030
BccI CCATC 5 cut(s) 766, 794, 838, 845, 956
BciT130I CCWGG 3 cut(s) 371, 1254, 1417
BcoDI GTCTC 7 cut(s) 168, 176, 200, 220, 531, 563, 1322
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 550
BglII AGATCT 2 cut(s) 1105, 1228
BisI GCNGC 4 cut(s) 356, 446, 488, 1044
BlsI GCNGC 4 cut(s) 357, 447, 489, 1045
Bme1390I CCNGG 3 cut(s) 371, 1254, 1417
Bme18I GGWCC 4 cut(s) 51, 859, 1373, 1390
BmgT120I GGNCC 6 cut(s) 51, 489, 859, 1031, 1373, 1390
BmiI GGNNCC 2 cut(s) 1236, 1356
BmrFI CCNGG 3 cut(s) 371, 1254, 1417
BmsI GCATC 4 cut(s) 352, 432, 1034, 1291
Bpu10I CCTNAGC 1 cut(s) 449
BpuEI CTTGAG 2 cut(s) 150, 755
BsaBI GATNNNNATC 1 cut(s) 81
BsaI GGTCTC 3 cut(s) 168, 531, 563
BsaJI CCNNGG 5 cut(s) 157, 478, 838, 1253, 1415
BsaWI WCCGGW 1 cut(s) 868
BsaXI ACNNNNNCTCC 1 cut(s) 1421
Bsc4I CCNNNNNNNGG 2 cut(s) 868, 1416
Bse118I RCCGGY 3 cut(s) 744, 868, 1033
Bse1I ACTGG 2 cut(s) 811, 1314
Bse3DI GCAATG 2 cut(s) 89, 1020
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 3 cut(s) 371, 1254, 1417
BseDI CCNNGG 5 cut(s) 157, 478, 838, 1253, 1415
BseGI GGATG 2 cut(s) 154, 967
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 868, 1416
BseMI GCAATG 2 cut(s) 89, 1020
BseMII CTCAG 3 cut(s) 171, 440, 839
BseNI ACTGG 2 cut(s) 811, 1314
BseRI GAGGAG 2 cut(s) 105, 466
BseSI GKGCMC 1 cut(s) 1359
BseXI GCAGC 3 cut(s) 367, 457, 1030
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 6 cut(s) 156, 421, 490, 660, 748, 1033
BshNI GGYRCC 2 cut(s) 1234, 1354
BshTI ACCGGT 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 1245
BsiSI CCGG 3 cut(s) 745, 869, 1034
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 2 cut(s) 868, 1416
BsmAI GTCTC 7 cut(s) 168, 176, 200, 220, 531, 563, 1322
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 4 cut(s) 469, 540, 1027, 1290
BsnI GGCC 6 cut(s) 156, 421, 490, 660, 748, 1033
Bso31I GGTCTC 3 cut(s) 168, 531, 563
Bsp1286I GDGCHC 2 cut(s) 1245, 1359
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 4 cut(s) 130, 306, 1105, 1228
Bsp19I CCATGG 1 cut(s) 838
BspACI CCGC 4 cut(s) 487, 523, 683, 1405
BspANI GGCC 6 cut(s) 156, 421, 490, 660, 748, 1033
BspCNI CTCAG 3 cut(s) 172, 441, 838
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 1236, 1356
BspPI GGATC 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 1284
BspT107I GGYRCC 2 cut(s) 1234, 1354
BspTNI GGTCTC 3 cut(s) 168, 531, 563
BsrBI CCGCTC 1 cut(s) 487
BsrDI GCAATG 2 cut(s) 89, 1020
BsrFI RCCGGY 3 cut(s) 744, 868, 1033
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 2 cut(s) 811, 1314
BssAI RCCGGY 3 cut(s) 744, 868, 1033
BssECI CCNNGG 5 cut(s) 157, 478, 838, 1253, 1415
BssMI GATC 4 cut(s) 130, 306, 1105, 1228
BssSI CACGAG 1 cut(s) 1385
BssT1I CCWWGG 3 cut(s) 157, 478, 838
Bst2BI CACGAG 1 cut(s) 1385
Bst2UI CCWGG 3 cut(s) 371, 1254, 1417
Bst4CI ACNGT 3 cut(s) 320, 848, 1247
Bst6I CTCTTC 3 cut(s) 624, 632, 1284
BstAUI TGTACA 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 750
BstDEI CTNAG 4 cut(s) 180, 297, 449, 825
BstDSI CCRYGG 1 cut(s) 838
BstF5I GGATG 2 cut(s) 154, 967
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 4 cut(s) 133, 309, 1108, 1231
BstMAI GTCTC 7 cut(s) 168, 176, 200, 220, 531, 563, 1322
BstMBI GATC 4 cut(s) 130, 306, 1105, 1228
BstMWI GCNNNNNNNGC 2 cut(s) 544, 745
BstNI CCWGG 3 cut(s) 371, 1254, 1417
BstNSI RCATGY 2 cut(s) 397, 403
BstSCI CCNGG 3 cut(s) 369, 1252, 1415
BstSFI CTRYAG 1 cut(s) 550
BstSLI GKGCMC 1 cut(s) 1359
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 367, 457, 1030
BstX2I RGATCY 2 cut(s) 1105, 1228
BstYI RGATCY 2 cut(s) 1105, 1228
BsuRI GGCC 6 cut(s) 156, 421, 490, 660, 748, 1033
BtgI CCRYGG 1 cut(s) 838
BtsCI GGATG 2 cut(s) 154, 967
BtsIMutI CAGTG 2 cut(s) 853, 1243
Cac8I GCNNGC 1 cut(s) 750
CfoI GCGC 1 cut(s) 69
Cfr10I RCCGGY 3 cut(s) 744, 868, 1033
Cfr13I GGNCC 6 cut(s) 51, 489, 859, 1031, 1373, 1390
Csp6I GTAC 3 cut(s) 397, 804, 1176
CspAI ACCGGT 1 cut(s) 868
CviQI GTAC 3 cut(s) 397, 804, 1176
DdeI CTNAG 4 cut(s) 180, 297, 449, 825
DpnI GATC 4 cut(s) 132, 308, 1107, 1230
DpnII GATC 4 cut(s) 130, 306, 1105, 1228
Eam1104I CTCTTC 3 cut(s) 624, 632, 1284
EarI CTCTTC 3 cut(s) 624, 632, 1284
EciI GGCGGA 1 cut(s) 1394
Eco130I CCWWGG 3 cut(s) 157, 478, 838
Eco147I AGGCCT 2 cut(s) 156, 421
Eco31I GGTCTC 3 cut(s) 168, 531, 563
Eco32I GATATC 2 cut(s) 79, 1164
Eco47I GGWCC 4 cut(s) 51, 859, 1373, 1390
Eco57I CTGAAG 1 cut(s) 1398
EcoO109I RGGNCCY 1 cut(s) 1373
EcoRII CCWGG 3 cut(s) 369, 1252, 1415
EcoRV GATATC 2 cut(s) 79, 1164
EcoT14I CCWWGG 3 cut(s) 157, 478, 838
EcoT22I ATGCAT 2 cut(s) 433, 1027
ErhI CCWWGG 3 cut(s) 157, 478, 838
FaqI GGGAC 1 cut(s) 329
FauI CCCGC 1 cut(s) 690
Fnu4HI GCNGC 4 cut(s) 356, 446, 488, 1044
FokI GGATG 2 cut(s) 161, 974
Fsp4HI GCNGC 4 cut(s) 356, 446, 488, 1044
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 68
GluI GCNGC 4 cut(s) 356, 446, 488, 1044
HaeIII GGCC 6 cut(s) 156, 421, 490, 660, 748, 1033
HapII CCGG 3 cut(s) 745, 869, 1034
HhaI GCGC 1 cut(s) 69
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 2 cut(s) 822, 1440
HindII GTYRAC 2 cut(s) 822, 1440
HinfI GANTC 5 cut(s) 5, 46, 228, 724, 983
HpaII CCGG 3 cut(s) 745, 869, 1034
HphI GGTGA 1 cut(s) 858
Hpy166II GTNNAC 6 cut(s) 508, 645, 670, 822, 929, 1440
Hpy188I TCNGA 3 cut(s) 51, 100, 835
Hpy188III TCNNGA 5 cut(s) 74, 314, 620, 728, 1295
Hpy8I GTNNAC 6 cut(s) 508, 645, 670, 822, 929, 1440
Hpy99I CGWCG 1 cut(s) 1368
HpyAV CCTTC 3 cut(s) 64, 502, 1064
HpyCH4III ACNGT 3 cut(s) 320, 848, 1247
HpyCH4IV ACGT 1 cut(s) 1363
HpyCH4V TGCA 9 cut(s) 219, 248, 303, 355, 431, 445, 538, 1025, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 544, 745
HpyF3I CTNAG 4 cut(s) 180, 297, 449, 825
HpySE526I ACGT 1 cut(s) 1363
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 130, 306, 1105, 1228
LguI GCTCTTC 1 cut(s) 1284
LmnI GCTCC 1 cut(s) 1429
Lsp1109I GCAGC 3 cut(s) 367, 457, 1030
LweI GCATC 4 cut(s) 352, 432, 1034, 1291
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 1363
MaeIII GTNAC 5 cut(s) 137, 455, 864, 1036, 1123
MalI GATC 4 cut(s) 132, 308, 1107, 1230
MbiI CCGCTC 1 cut(s) 487
MboI GATC 4 cut(s) 130, 306, 1105, 1228
MboII GAAGA 8 cut(s) 451, 641, 649, 1030, 1100, 1271, 1310, 1391
MflI RGATCY 2 cut(s) 1105, 1228
MhlI GDGCHC 2 cut(s) 1245, 1359
MluCI AATT 8 cut(s) 29, 591, 775, 791, 814, 1141, 1259, 1272
MlyI GAGTC 2 cut(s) 222, 992
MmeI TCCRAC 2 cut(s) 143, 1307
Mph1103I ATGCAT 2 cut(s) 433, 1027
MroXI GAANNNNTTC 1 cut(s) 897
MseI TTAA 4 cut(s) 996, 1119, 1197, 1218
MslI CAYNNNNRTG 3 cut(s) 398, 909, 978
MspA1I CMGCKG 2 cut(s) 448, 1043
MspI CCGG 3 cut(s) 745, 869, 1034
MspR9I CCNGG 3 cut(s) 371, 1254, 1417
Mva1269I GAATGC 4 cut(s) 469, 540, 1027, 1290
MvaI CCWGG 3 cut(s) 371, 1254, 1417
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 544, 745
NcoI CCATGG 1 cut(s) 838
NdeII GATC 4 cut(s) 130, 306, 1105, 1228
NlaIV GGNNCC 2 cut(s) 1236, 1356
NmeAIII GCCGAG 1 cut(s) 686
NmuCI GTSAC 2 cut(s) 137, 864
NsiI ATGCAT 2 cut(s) 433, 1027
NspI RCATGY 2 cut(s) 397, 403
PceI AGGCCT 2 cut(s) 156, 421
PciI ACATGT 2 cut(s) 393, 399
PciSI GCTCTTC 1 cut(s) 1284
PctI GAATGC 4 cut(s) 469, 540, 1027, 1290
PdmI GAANNNNTTC 1 cut(s) 897
PfeI GAWTC 3 cut(s) 5, 46, 724
PinAI ACCGGT 1 cut(s) 868
PkrI GCNGC 4 cut(s) 357, 447, 489, 1045
PleI GAGTC 2 cut(s) 222, 991
PpsI GAGTC 2 cut(s) 222, 991
PpuMI RGGWCCY 1 cut(s) 1373
PscI ACATGT 2 cut(s) 393, 399
Psp5II RGGWCCY 1 cut(s) 1373
Psp6I CCWGG 3 cut(s) 369, 1252, 1415
PspGI CCWGG 3 cut(s) 369, 1252, 1415
PspN4I GGNNCC 2 cut(s) 1236, 1356
PspPI GGNCC 6 cut(s) 51, 489, 859, 1031, 1373, 1390
PspPPI RGGWCCY 1 cut(s) 1373
PsuI RGATCY 2 cut(s) 1105, 1228
PvuII CAGCTG 2 cut(s) 448, 1043
RsaI GTAC 3 cut(s) 398, 805, 1177
RsaNI GTAC 3 cut(s) 397, 804, 1176
RseI CAYNNNNRTG 3 cut(s) 398, 909, 978
SapI GCTCTTC 1 cut(s) 1284
SaqAI TTAA 4 cut(s) 996, 1119, 1197, 1218
SatI GCNGC 4 cut(s) 356, 446, 488, 1044
Sau3AI GATC 4 cut(s) 130, 306, 1105, 1228
Sau96I GGNCC 6 cut(s) 51, 489, 859, 1031, 1373, 1390
SchI GAGTC 2 cut(s) 222, 992
ScrFI CCNGG 3 cut(s) 371, 1254, 1417
SduI GDGCHC 2 cut(s) 1245, 1359
SfaNI GCATC 4 cut(s) 352, 432, 1034, 1291
SfcI CTRYAG 1 cut(s) 550
SinI GGWCC 4 cut(s) 51, 859, 1373, 1390
SmiMI CAYNNNNRTG 3 cut(s) 398, 909, 978
SmlI CTYRAG 2 cut(s) 165, 734
SmoI CTYRAG 2 cut(s) 165, 734
Sse9I AATT 8 cut(s) 29, 591, 775, 791, 814, 1141, 1259, 1272
SseBI AGGCCT 2 cut(s) 156, 421
SsiI CCGC 4 cut(s) 487, 523, 683, 1405
SspMI CTAG 1 cut(s) 359
StuI AGGCCT 2 cut(s) 156, 421
StyD4I CCNGG 3 cut(s) 369, 1252, 1415
StyI CCWWGG 3 cut(s) 157, 478, 838
TaaI ACNGT 3 cut(s) 320, 848, 1247
TaiI ACGT 1 cut(s) 1366
TaqI TCGA 4 cut(s) 231, 532, 1344, 1366
TasI AATT 8 cut(s) 29, 591, 775, 791, 814, 1141, 1259, 1272
TatI WGTACW 2 cut(s) 396, 1175
TauI GCSGC 1 cut(s) 490
TfiI GAWTC 3 cut(s) 5, 46, 724
Tru1I TTAA 4 cut(s) 996, 1119, 1197, 1218
Tru9I TTAA 4 cut(s) 996, 1119, 1197, 1218
TscAI CASTG 2 cut(s) 853, 1250
TseFI GTSAC 2 cut(s) 137, 864
TseI GCWGC 3 cut(s) 355, 445, 1043
Tsp45I GTSAC 2 cut(s) 137, 864
TspDTI ATGAA 9 cut(s) 42, 46, 59, 189, 476, 569, 1031, 1083, 1183
TspGWI ACGGA 1 cut(s) 1382
TspRI CASTG 2 cut(s) 853, 1250
VpaK11BI GGWCC 4 cut(s) 51, 859, 1373, 1390
XapI RAATTY 3 cut(s) 775, 814, 1259
XceI RCATGY 2 cut(s) 397, 403
XmnI GAANNNNTTC 1 cut(s) 897
XspI CTAG 1 cut(s) 359
Zsp2I ATGCAT 2 cut(s) 433, 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.