RchiOBHm_Chr1g0367081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013288
Physical Location & Seq
Reverse (-)
57471323 .. 57472385
1063 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
ATGGGAGAAAAAGAAGAGAAGAAGTACAAGAACAAGAAGCAAAAACTCAAACACCAAAACCCCAAAGATGACCAAACCACCACAAAACCAGCATCAGATTTCTCCTTCAAGCCAAGCTCCGACGTAAAGGGTCTCCGATTCGGAGGCCAATTCATCGTAAAGTCCTTCACAATCCGCCGTGCAAGGCCCTTTGAGCTCCTGCAGCTCCTCTCAGTCACACCAGACATCAAAGAAAACCATATCAACAACAACAAAAAGCTGCCCTTTCCTTCCACCACCGCGTTCTTGCCCACAAACTTCACCATTCTAGCACACCATGCCTGGCACACCCTCACACTAGGCCTAGGCACCAAGAAGTCCAAAGTAGTCCTCTTTGTTTTCGAAAATGAGCCCATGAAGGCCGCCGTGGACCGTGTTTGGCCGCCTGAAATTCCACTAGGGGAAGTGAACAAGAGGCTTATCAGAGGGCTCAGTGGGTGTGAGATGGCAAGGTTCAAGTTCAGGAAAGGGTGCATTACTTTTTATGTGTATGCAGTTAGGCAGATTGGGAACATGGGTTTTTCAAATGCTGATGATCTCAGAACAATTCTACAGTCTGTGGTGGCTCTTCAAGATTTCTTGGATCACACTGCTATGCTTGCCATGCCTAACCAGAGAAGCATTAACTTTCAACAACCTCCTACAGCCATGGCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.4

Weight (kDa)

9.94

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7851 PF25236 31 - 222 1.6e-106 Domain of unknown function (DUF7851)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55420
fragaria_vesca FvH4_7g22470
malus_domestica MD01G1134100.v1.1 MD07G1198300.v1.1
prunus_persica Prupe.2G235300_v2.0.a1
pyrus_communis pycom01g15490 pycom07g18540
rosa_chinensis RchiOBHm_Chr1g0367081
rosa_laevigata RLG00000027301
rosa_multiflora Rmu_sc0003467.1_g000026 Rmu_sc0007424.1_g000002
rosa_roxburghii Rroxscaffold_4G00289640
rosa_rugosa Rorug01G0334300
rosa_samantha Rh1AG341200 Rh1BG301700 Rh1CG317900 Rh1DG334100
rosa_wichuraiana Rw1G030310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 1 cut(s) 281
AciI CCGC 4 cut(s) 175, 279, 402, 422
AclWI GGATC 1 cut(s) 630
AcoI YGGCCR 1 cut(s) 419
AcsI RAATTY 1 cut(s) 429
AfaI GTAC 1 cut(s) 26
AgsI TTSAA 5 cut(s) 109, 496, 564, 611, 671
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 4 cut(s) 117, 196, 205, 259
AluI AGCT 4 cut(s) 117, 196, 205, 259
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 630
AoxI GGCC 5 cut(s) 145, 185, 340, 399, 419
ApeKI GCWGC 2 cut(s) 202, 259
ApoI RAATTY 1 cut(s) 429
AspA2I CCTAGG 1 cut(s) 343
AspS9I GGNCC 2 cut(s) 186, 409
AsuHPI GGTGA 1 cut(s) 292
AsuII TTCGAA 1 cut(s) 381
AvaII GGWCC 1 cut(s) 409
AvrII CCTAGG 1 cut(s) 343
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 3 cut(s) 198, 393, 471
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 214, 246
BccI CCATC 1 cut(s) 478
BceAI ACGGC 2 cut(s) 162, 389
BciT130I CCWGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 5 cut(s) 308, 338, 344, 437, 697
BfmI CTRYAG 3 cut(s) 200, 590, 681
BisI GCNGC 4 cut(s) 203, 260, 402, 422
BlnI CCTAGG 1 cut(s) 343
BlsI GCNGC 4 cut(s) 204, 261, 403, 423
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 2 cut(s) 186, 409
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 3 cut(s) 343, 405, 687
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 3 cut(s) 343, 405, 687
BseMII CTCAG 3 cut(s) 225, 484, 592
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 214, 246
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 5 cut(s) 147, 187, 342, 401, 421
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 5 cut(s) 147, 187, 342, 401, 421
Bso31I GGTCTC 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 381
Bsp1286I GDGCHC 3 cut(s) 198, 393, 471
Bsp143I GATC 2 cut(s) 574, 622
Bsp19I CCATGG 1 cut(s) 687
BspACI CCGC 4 cut(s) 175, 279, 402, 422
BspANI GGCC 5 cut(s) 147, 187, 342, 401, 421
BspCNI CTCAG 3 cut(s) 224, 483, 591
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 204
BspPI GGATC 1 cut(s) 630
BspQI GCTCTTC 1 cut(s) 612
BspT104I TTCGAA 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 137
BssECI CCNNGG 3 cut(s) 343, 405, 687
BssMI GATC 2 cut(s) 574, 622
BssT1I CCWWGG 2 cut(s) 343, 687
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 2 cut(s) 413, 594
Bst6I CTCTTC 2 cut(s) 9, 612
BstAPI GCANNNNNTGC 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 3 cut(s) 211, 470, 578
BstDSI CCRYGG 2 cut(s) 405, 687
BstFNI CGCG 1 cut(s) 281
BstKTI GATC 2 cut(s) 577, 625
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 574, 622
BstMWI GCNNNNNNNGC 5 cut(s) 193, 202, 317, 638, 643
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 3 cut(s) 200, 590, 681
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 214, 246
BsuRI GGCC 5 cut(s) 147, 187, 342, 401, 421
BtgI CCRYGG 2 cut(s) 405, 687
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 2 cut(s) 478, 627
Cac8I GCNNGC 1 cut(s) 639
Cfr13I GGNCC 2 cut(s) 186, 409
Csp6I GTAC 1 cut(s) 25
CviAII CATG 5 cut(s) 317, 394, 553, 643, 688
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 3 cut(s) 211, 470, 578
DpnI GATC 2 cut(s) 576, 624
DpnII GATC 2 cut(s) 574, 622
EaeI YGGCCR 1 cut(s) 419
Eam1104I CTCTTC 2 cut(s) 9, 612
EarI CTCTTC 2 cut(s) 9, 612
EciI GGCGGA 1 cut(s) 164
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 343, 687
Eco147I AGGCCT 1 cut(s) 342
Eco24I GRGCYC 3 cut(s) 198, 393, 471
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 343, 687
EcoT38I GRGCYC 3 cut(s) 198, 393, 471
ErhI CCWWGG 2 cut(s) 343, 687
FaeI CATG 5 cut(s) 320, 397, 556, 646, 691
FaiI YATR 9 cut(s) 240, 318, 395, 525, 531, 554, 635, 644, 689
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 5 cut(s) 316, 393, 552, 642, 687
Fnu4HI GCNGC 4 cut(s) 203, 260, 402, 422
FriOI GRGCYC 3 cut(s) 198, 393, 471
Fsp4HI GCNGC 4 cut(s) 203, 260, 402, 422
FspBI CTAG 5 cut(s) 308, 338, 344, 437, 697
GluI GCNGC 4 cut(s) 203, 260, 402, 422
HaeIII GGCC 5 cut(s) 147, 187, 342, 401, 421
Hin1II CATG 5 cut(s) 320, 397, 556, 646, 691
HinfI GANTC 1 cut(s) 138
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 2 cut(s) 409, 448
Hpy188I TCNGA 6 cut(s) 97, 121, 137, 143, 464, 581
Hpy188III TCNNGA 2 cut(s) 502, 611
Hpy8I GTNNAC 2 cut(s) 409, 448
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 115, 175, 279, 391
HpyCH4III ACNGT 2 cut(s) 413, 594
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 4 cut(s) 182, 202, 513, 533
HpyF10VI GCNNNNNNNGC 5 cut(s) 193, 202, 317, 638, 643
HpyF3I CTNAG 3 cut(s) 211, 470, 578
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 5 cut(s) 320, 397, 556, 646, 691
Kzo9I GATC 2 cut(s) 574, 622
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 3 cut(s) 122, 201, 210
LpnPI CCDG 8 cut(s) 102, 212, 234, 307, 334, 438, 487, 665
Lsp1109I GCAGC 2 cut(s) 214, 246
LweI GCATC 1 cut(s) 101
MaeI CTAG 5 cut(s) 308, 338, 344, 437, 697
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 576, 624
MboI GATC 2 cut(s) 574, 622
MboII GAAGA 3 cut(s) 26, 31, 599
MhlI GDGCHC 3 cut(s) 198, 393, 471
MluCI AATT 3 cut(s) 149, 429, 585
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 7 cut(s) 137, 218, 341, 380, 447, 458, 687
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 632
MspR9I CCNGG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 5 cut(s) 193, 202, 317, 638, 643
NcoI CCATGG 1 cut(s) 687
NdeII GATC 2 cut(s) 574, 622
NlaIII CATG 5 cut(s) 320, 397, 556, 646, 691
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 214
NspV TTCGAA 1 cut(s) 381
PceI AGGCCT 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 612
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 4 cut(s) 204, 261, 403, 423
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 186, 409
PstI CTGCAG 1 cut(s) 204
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 632
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 4 cut(s) 203, 260, 402, 422
Sau3AI GATC 2 cut(s) 574, 622
Sau96I GGNCC 2 cut(s) 186, 409
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 3 cut(s) 198, 393, 471
SetI ASST 7 cut(s) 119, 126, 198, 207, 261, 494, 679
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 3 cut(s) 200, 590, 681
SfuI TTCGAA 1 cut(s) 381
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 632
Sse9I AATT 3 cut(s) 149, 429, 585
SseBI AGGCCT 1 cut(s) 342
SsiI CCGC 4 cut(s) 175, 279, 402, 422
SspMI CTAG 5 cut(s) 308, 338, 344, 437, 697
SstI GAGCTC 1 cut(s) 198
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 2 cut(s) 343, 687
TaaI ACNGT 2 cut(s) 413, 594
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 381
TasI AATT 3 cut(s) 149, 429, 585
TatI WGTACW 1 cut(s) 24
TauI GCSGC 2 cut(s) 404, 424
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 2 cut(s) 478, 634
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 2 cut(s) 202, 259
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 142, 410
TspRI CASTG 2 cut(s) 478, 634
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 1 cut(s) 429
XmaJI CCTAGG 1 cut(s) 343
XspI CTAG 5 cut(s) 308, 338, 344, 437, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.