RchiOBHm_Chr1g0371481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009039
Physical Location & Seq
Reverse (-)
60640114 .. 60642456
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
ATGCGCACGTTAGCAACCAAACTCACCACTTGTGCAAAGCATTACTGTAGAACAAACCCAGTACGGAATGCGCAGTCTCGCAGTTTCTCATCTTACAATGGAAGAGATGAGCTCTCACTTGAACAAGAAGCTGATAGAAAAATCGGGTGGTTGTTGAAATTGTTATTTGCTGGCACTGCCACTGCTGTAGCTTACAACATCATGCCATACATGGGAGATAATTTGTTGCAACAGTCGGTGTCGCTTTTGCAAGTGAAGGATCCTTTGTTCAAGAGGATGGGGGCTTCTAGATTAGCGCAGTTTGCGATAGATGATGAAAGGAGGATGAAAATAGTGGAGATGGGTGGTGCTCAGGAGCTCGTAAATATGTTGGGGAATGCTAAAGATGACAGCACAAGGAAGGAAGCTTTGAAAGCTCTTTCTGCTATTTCACAATCAGATCAAGCTCTTGGAGCTTTACACCAAGCTGGGGCAATCTCAGTCATCCAAGCTGCCCCTGATTCCTTGGAACATGCCGACATTGAGAAATACAAGTCAGGTTTGCTCCAGAGATTCCAAGATCTGAGATATGATAGTCCTTCTGAAGATGTATCAAGTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.1

Weight (kDa)

7.75

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 5, 72
AclWI GGATC 2 cut(s) 254, 267
AcuI CTGAAG 1 cut(s) 603
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 2 cut(s) 212, 469
AgsI TTSAA 4 cut(s) 122, 157, 271, 412
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
Alw21I GWGCWC 3 cut(s) 114, 352, 360
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 2 cut(s) 254, 267
ApeKI GCWGC 1 cut(s) 491
AspLEI GCGC 3 cut(s) 6, 73, 298
AsuHPI GGTGA 1 cut(s) 16
BamHI GGATCC 1 cut(s) 259
BanII GRGCYC 2 cut(s) 114, 360
Bbv12I GWGCWC 3 cut(s) 114, 352, 360
BbvI GCAGC 1 cut(s) 478
BccI CCATC 2 cut(s) 271, 334
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 2 cut(s) 288, 601
BfmI CTRYAG 2 cut(s) 46, 186
BglII AGATCT 1 cut(s) 559
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
BmiI GGNNCC 1 cut(s) 261
BmrI ACTGGG 1 cut(s) 53
BmuI ACTGGG 1 cut(s) 53
BplI GAGNNNNNCTC 2 cut(s) 96, 128
BpmI CTGGAG 1 cut(s) 530
Bpu10I CCTNAGC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 504
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 469
Bse1I ACTGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 3 cut(s) 282, 330, 483
BseLI CCNNNNNNNGG 2 cut(s) 212, 469
BseMII CTCAG 3 cut(s) 365, 492, 554
BseNI ACTGG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 478
BseYI CCCAGC 1 cut(s) 467
BsiHKAI GWGCWC 3 cut(s) 114, 352, 360
BslI CCNNNNNNNGG 2 cut(s) 212, 469
BsmAI GTCTC 1 cut(s) 81
BsmI GAATGC 2 cut(s) 73, 382
Bsp1286I GDGCHC 3 cut(s) 114, 352, 360
Bsp143I GATC 3 cut(s) 259, 439, 559
BspCNI CTCAG 3 cut(s) 364, 491, 555
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 2 cut(s) 254, 267
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 3 cut(s) 259, 439, 559
BssT1I CCWWGG 1 cut(s) 504
Bst4CI ACNGT 2 cut(s) 47, 234
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 3 cut(s) 351, 478, 563
BstF5I GGATG 3 cut(s) 282, 330, 483
BstHHI GCGC 3 cut(s) 6, 73, 298
BstKTI GATC 3 cut(s) 262, 442, 562
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 259, 439, 559
BstMWI GCNNNNNNNGC 5 cut(s) 176, 302, 413, 422, 452
BstNSI RCATGY 1 cut(s) 515
BstSFI CTRYAG 2 cut(s) 46, 186
BstV1I GCAGC 1 cut(s) 478
BstX2I RGATCY 2 cut(s) 259, 559
BstYI RGATCY 2 cut(s) 259, 559
BtsCI GGATG 3 cut(s) 282, 330, 483
BtsI GCAGTG 2 cut(s) 174, 180
BtsIMutI CAGTG 2 cut(s) 174, 180
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 3 cut(s) 6, 73, 298
Csp6I GTAC 1 cut(s) 62
CviAII CATG 3 cut(s) 202, 211, 512
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 3 cut(s) 351, 478, 563
DpnI GATC 3 cut(s) 261, 441, 561
DpnII GATC 3 cut(s) 259, 439, 559
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Ecl136II GAGCTC 2 cut(s) 112, 358
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 2 cut(s) 114, 360
Eco53kI GAGCTC 2 cut(s) 112, 358
Eco57I CTGAAG 1 cut(s) 603
EcoICRI GAGCTC 2 cut(s) 112, 358
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 2 cut(s) 114, 360
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 3 cut(s) 205, 214, 515
FaiI YATR 6 cut(s) 203, 208, 212, 368, 513, 570
FatI CATG 3 cut(s) 201, 210, 511
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 3 cut(s) 289, 337, 470
FriOI GRGCYC 2 cut(s) 114, 360
Fsp4HI GCNGC 1 cut(s) 492
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 288, 601
FspI TGCGCA 2 cut(s) 5, 72
GlaI GCGC 3 cut(s) 5, 72, 297
GluI GCNGC 1 cut(s) 492
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 530
HhaI GCGC 3 cut(s) 6, 73, 298
Hin1II CATG 3 cut(s) 205, 214, 515
Hin6I GCGC 3 cut(s) 4, 71, 296
HinP1I GCGC 3 cut(s) 4, 71, 296
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 2 cut(s) 500, 552
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 439, 564, 583
Hpy188III TCNNGA 4 cut(s) 271, 288, 353, 547
HpyAV CCTTC 3 cut(s) 250, 394, 588
HpyCH4III ACNGT 2 cut(s) 47, 234
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 3 cut(s) 35, 229, 250
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 302, 413, 422, 452
HpyF3I CTNAG 3 cut(s) 351, 478, 563
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 3 cut(s) 205, 214, 515
HspAI GCGC 3 cut(s) 4, 71, 296
Kzo9I GATC 3 cut(s) 259, 439, 559
LmnI GCTCC 3 cut(s) 355, 452, 549
LpnPI CCDG 7 cut(s) 72, 156, 338, 453, 510, 522, 560
Lsp1109I GCAGC 1 cut(s) 478
MaeI CTAG 2 cut(s) 288, 601
MaeII ACGT 1 cut(s) 8
MalI GATC 3 cut(s) 261, 441, 561
MboI GATC 3 cut(s) 259, 439, 559
MboII GAAGA 2 cut(s) 114, 596
MflI RGATCY 2 cut(s) 259, 559
MhlI GDGCHC 3 cut(s) 114, 352, 360
MluCI AATT 2 cut(s) 158, 220
MnlI CCTC 2 cut(s) 267, 315
Mva1269I GAATGC 2 cut(s) 73, 382
MwoI GCNNNNNNNGC 5 cut(s) 176, 302, 413, 422, 452
NdeII GATC 3 cut(s) 259, 439, 559
NlaIII CATG 3 cut(s) 205, 214, 515
NlaIV GGNNCC 1 cut(s) 261
NsbI TGCGCA 2 cut(s) 5, 72
NspI RCATGY 1 cut(s) 515
PctI GAATGC 2 cut(s) 73, 382
PfeI GAWTC 2 cut(s) 500, 552
PkrI GCNGC 1 cut(s) 493
Psp124BI GAGCTC 2 cut(s) 114, 360
PspFI CCCAGC 1 cut(s) 467
PspN4I GGNNCC 1 cut(s) 261
PsuI RGATCY 2 cut(s) 259, 559
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SacI GAGCTC 2 cut(s) 114, 360
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 3 cut(s) 259, 439, 559
SduI GDGCHC 3 cut(s) 114, 352, 360
SfcI CTRYAG 2 cut(s) 46, 186
Sse9I AATT 2 cut(s) 158, 220
SspMI CTAG 2 cut(s) 288, 601
SstI GAGCTC 2 cut(s) 114, 360
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 47, 234
TaiI ACGT 1 cut(s) 11
TasI AATT 2 cut(s) 158, 220
TfiI GAWTC 2 cut(s) 500, 552
TscAI CASTG 2 cut(s) 181, 187
TseI GCWGC 1 cut(s) 491
TspDTI ATGAA 2 cut(s) 330, 341
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 2 cut(s) 181, 187
XbaI TCTAGA 1 cut(s) 287
XceI RCATGY 1 cut(s) 515
XspI CTAG 2 cut(s) 288, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.