RchiOBHm_Chr1g0371551

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017366
Physical Location & Seq
Reverse (-)
60682259 .. 60683454
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 960 bp
ATGGCTTCTTACAAATTACTCCTGCTTATCTTGGTCTTTGCTGGTGCATTTATTCAATATATTAATGGCAAGCTATCTCCAAAGTACTACTCATCTACATGCCCAAATGCATTCTCTATCGTGCAAGGCGAAGTTATCGCAGCAATTAAGAACGAAACACGCATAGGGGCTTCGTTACTCCGCCTGCATTTCCATGATTGCTTTGTAAATGGCTGTGATGCTTCAATACTGCTGGATGATACACCAGGCTTTATTGGTGAGAAAACAGCAGTTCCAAATAACAACTCGGTCAGAGGATTTGAAGTAGTTGATCAGATTAAAGCCAAGCTTGAGAAGGCATGCCCCGGAGTGGTGTCGTGTGCTGATATTCTTGCTCTAGCTGCGCGTGACTCTGTAGTACATTTGGGTGGCCCTTCATGGAACGTTGGTTTGGGAAGAAGAGATTCCACTAGTGCTAGTAGGAGTGCTGCAAACACCTCCATCCCTCCACCCACATCAAATATAAGCAGTCTCCTCTCGAGCTTTGCTGCTCAGGGTCTATCCTTGAGGGATTTAGTCGCACTTGCAGGATCTCACACCATTGGCCTGGCAAGATGCACATCATTCCGAGCACGCATCTACAACGACACCACTATTGATGCCGTCTTTGCCAAGTCATTGCAGAGCAATTGCCCAAGAACCGGAAATGATAACAACCTTGCAAGCCTTGACCTCCAGACCCCAACATATTTTGACAATTTATATTACAAGAATCTGCTGAAAGAAAAGGGTCTTCTTCATTCAGACCAGGAGCTCTTCAACGGAACATCTGCTGATGCTCTGGTAAAAATATACGCAAGCAACACTTTCAAATTCTTCGAAGACTTTGCCAAGTCCATGGTCAAAATGGGAAAGATAAAGCCTCTCACAGGAAGCCAGGGTGAAATCAGAATCAATTGCAGAAAAGTCAATTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

319

Amino Acids

34.55

Weight (kDa)

9.04

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 281 2.6e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25550
malus_domestica MD01G1162100.v1.1 MD01G1162400.v1.1 MD07G1230500.v1.1
prunus_persica Prupe.2G260600_v2.0.a1
pyrus_communis pycom07g20800
rosa_chinensis RchiOBHm_Chr1g0371551
rosa_multiflora Rmu_sc0000948.1_g000034
rosa_roxburghii Rroxscaffold_4G00285560
rosa_rugosa Rorug01G0365300
rosa_samantha Rh1BG338700 Rh1DG369700
rosa_wichuraiana Rw1G033010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 385
AciI CCGC 1 cut(s) 181
AclI AACGTT 1 cut(s) 423
AclWI GGATC 1 cut(s) 577
AcsI RAATTY 1 cut(s) 851
AfaI GTAC 2 cut(s) 86, 399
AfiI CCNNNNNNNGG 3 cut(s) 349, 680, 908
AgsI TTSAA 5 cut(s) 56, 225, 302, 799, 850
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 4 cut(s) 244, 585, 786, 915
AjuI GAANNNNNNNTTGG 3 cut(s) 413, 445, 934
AluBI AGCT 5 cut(s) 73, 328, 380, 522, 793
AluI AGCT 5 cut(s) 73, 328, 380, 522, 793
Alw21I GWGCWC 2 cut(s) 613, 795
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 517
AoxI GGCC 2 cut(s) 409, 583
ApeKI GCWGC 4 cut(s) 140, 380, 467, 527
ApoI RAATTY 1 cut(s) 851
AseI ATTAAT 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 442
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 269, 932
AsuII TTCGAA 1 cut(s) 858
AvaI CYCGRG 1 cut(s) 517
BanII GRGCYC 1 cut(s) 795
BbsI GAAGAC 2 cut(s) 764, 867
Bbv12I GWGCWC 2 cut(s) 613, 795
BbvI GCAGC 4 cut(s) 152, 367, 454, 514
BccI CCATC 1 cut(s) 488
BceAI ACGGC 1 cut(s) 626
BcgI CGANNNNNNTGC 2 cut(s) 848, 882
BciT130I CCWGG 4 cut(s) 246, 587, 788, 917
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 515
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 3 cut(s) 377, 450, 456
BfmI CTRYAG 1 cut(s) 393
BisI GCNGC 4 cut(s) 141, 381, 468, 528
BlsI GCNGC 4 cut(s) 142, 382, 469, 529
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 5 cut(s) 246, 345, 587, 788, 917
BmeT110I CYCGRG 1 cut(s) 517
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 5 cut(s) 246, 345, 587, 788, 917
BmsI GCATC 5 cut(s) 208, 584, 624, 628, 805
BpiI GAAGAC 2 cut(s) 764, 867
BpmI CTGGAG 1 cut(s) 698
Bpu10I CCTNAGC 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 858
BpuEI CTTGAG 2 cut(s) 350, 565
BpuMI CCSGG 1 cut(s) 345
BsaBI GATNNNNATC 1 cut(s) 598
BsaJI CCNNGG 3 cut(s) 343, 876, 916
BsaWI WCCGGW 1 cut(s) 680
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 680, 908
Bse3DI GCAATG 1 cut(s) 656
Bse8I GATNNNNATC 1 cut(s) 598
BseBI CCWGG 4 cut(s) 246, 587, 788, 917
BseDI CCNNGG 3 cut(s) 343, 876, 916
BseGI GGATG 2 cut(s) 241, 480
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 3 cut(s) 349, 680, 908
BseMI GCAATG 1 cut(s) 656
BseMII CTCAG 1 cut(s) 545
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 4 cut(s) 152, 367, 454, 514
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 2 cut(s) 411, 585
BsiHKAI GWGCWC 2 cut(s) 613, 795
BsiHKCI CYCGRG 1 cut(s) 517
BsiSI CCGG 2 cut(s) 345, 681
BslI CCNNNNNNNGG 3 cut(s) 349, 680, 908
BsmAI GTCTC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 2 cut(s) 411, 585
BsoBI CYCGRG 1 cut(s) 517
Bsp119I TTCGAA 1 cut(s) 858
Bsp1286I GDGCHC 2 cut(s) 613, 795
Bsp143I GATC 2 cut(s) 310, 569
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 1 cut(s) 181
BspANI GGCC 2 cut(s) 411, 585
BspCNI CTCAG 1 cut(s) 544
BspFNI CGCG 1 cut(s) 385
BspPI GGATC 1 cut(s) 577
BspQI GCTCTTC 1 cut(s) 800
BspT104I TTCGAA 1 cut(s) 858
BsrDI GCAATG 1 cut(s) 656
BssECI CCNNGG 3 cut(s) 343, 876, 916
BssMI GATC 2 cut(s) 310, 569
BssT1I CCWWGG 1 cut(s) 876
Bst2UI CCWGG 4 cut(s) 246, 587, 788, 917
Bst6I CTCTTC 2 cut(s) 433, 800
BstBI TTCGAA 1 cut(s) 858
BstC8I GCNNGC 6 cut(s) 71, 185, 340, 613, 703, 838
BstDEI CTNAG 1 cut(s) 531
BstDSI CCRYGG 1 cut(s) 876
BstENI CCTNNNNNAGG 1 cut(s) 906
BstF5I GGATG 2 cut(s) 241, 480
BstFNI CGCG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 2 cut(s) 313, 572
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 2 cut(s) 310, 569
BstMWI GCNNNNNNNGC 2 cut(s) 380, 647
BstNI CCWGG 4 cut(s) 246, 587, 788, 917
BstNSI RCATGY 2 cut(s) 102, 342
BstSCI CCNGG 5 cut(s) 244, 343, 585, 786, 915
BstSFI CTRYAG 1 cut(s) 393
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 4 cut(s) 152, 367, 454, 514
BstV2I GAAGAC 2 cut(s) 764, 867
BstX2I RGATCY 1 cut(s) 569
BstXI CCANNNNNNTGG 2 cut(s) 586, 877
BstYI RGATCY 1 cut(s) 569
BsuRI GGCC 2 cut(s) 411, 585
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 2 cut(s) 241, 480
Cac8I GCNNGC 6 cut(s) 71, 185, 340, 613, 703, 838
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 2 cut(s) 85, 398
CviAII CATG 5 cut(s) 99, 194, 339, 417, 877
CviQI GTAC 2 cut(s) 85, 398
DdeI CTNAG 1 cut(s) 531
DpnI GATC 2 cut(s) 312, 571
DpnII GATC 2 cut(s) 310, 569
Eam1104I CTCTTC 2 cut(s) 433, 800
EarI CTCTTC 2 cut(s) 433, 800
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 1 cut(s) 876
Eco24I GRGCYC 1 cut(s) 795
Eco53kI GAGCTC 1 cut(s) 793
Eco88I CYCGRG 1 cut(s) 517
EcoICRI GAGCTC 1 cut(s) 793
EcoNI CCTNNNNNAGG 1 cut(s) 906
EcoRII CCWGG 4 cut(s) 244, 585, 786, 915
EcoT14I CCWWGG 1 cut(s) 876
EcoT22I ATGCAT 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 795
ErhI CCWWGG 1 cut(s) 876
FaeI CATG 5 cut(s) 102, 197, 342, 420, 880
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 829, 861
FatI CATG 5 cut(s) 98, 193, 338, 416, 876
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 4 cut(s) 141, 381, 468, 528
FokI GGATG 2 cut(s) 248, 467
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 4 cut(s) 141, 381, 468, 528
FspBI CTAG 3 cut(s) 377, 450, 456
GlaI GCGC 1 cut(s) 384
GluI GCNGC 4 cut(s) 141, 381, 468, 528
GsuI CTGGAG 1 cut(s) 698
HaeIII GGCC 2 cut(s) 411, 585
HapII CCGG 2 cut(s) 345, 681
HhaI GCGC 1 cut(s) 385
Hin1II CATG 5 cut(s) 102, 197, 342, 420, 880
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 389, 443, 751, 930
HpaII CCGG 2 cut(s) 345, 681
HphI GGTGA 2 cut(s) 269, 932
Hpy188I TCNGA 5 cut(s) 293, 315, 608, 784, 929
Hpy188III TCNNGA 2 cut(s) 517, 715
HpyAV CCTTC 2 cut(s) 328, 423
HpyCH4IV ACGT 1 cut(s) 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 647
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 5 cut(s) 102, 197, 342, 420, 880
HspAI GCGC 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 2 cut(s) 310, 569
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 1 cut(s) 790
Lsp1109I GCAGC 4 cut(s) 152, 367, 454, 514
LweI GCATC 5 cut(s) 208, 584, 624, 628, 805
MaeI CTAG 3 cut(s) 377, 450, 456
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 174, 386
MalI GATC 2 cut(s) 312, 571
MboI GATC 2 cut(s) 310, 569
MboII GAAGA 7 cut(s) 447, 450, 764, 767, 787, 847, 872
MfeI CAATTG 3 cut(s) 667, 934, 949
MflI RGATCY 1 cut(s) 569
MhlI GDGCHC 2 cut(s) 613, 795
MluCI AATT 7 cut(s) 14, 144, 667, 736, 851, 934, 949
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 7 cut(s) 287, 487, 495, 524, 540, 722, 912
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 442
MseI TTAA 3 cut(s) 63, 147, 318
MslI CAYNNNNRTG 3 cut(s) 97, 192, 405
MspI CCGG 2 cut(s) 345, 681
MspR9I CCNGG 5 cut(s) 246, 345, 587, 788, 917
MunI CAATTG 3 cut(s) 667, 934, 949
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 4 cut(s) 246, 587, 788, 917
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 2 cut(s) 380, 647
NciI CCSGG 1 cut(s) 345
NcoI CCATGG 1 cut(s) 876
NdeII GATC 2 cut(s) 310, 569
NlaIII CATG 5 cut(s) 102, 197, 342, 420, 880
NmuCI GTSAC 1 cut(s) 386
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 2 cut(s) 102, 342
NspV TTCGAA 1 cut(s) 858
PaeI GCATGC 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 517
PciSI GCTCTTC 1 cut(s) 800
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 3 cut(s) 443, 751, 930
PkrI GCNGC 4 cut(s) 142, 382, 469, 529
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
PshBI ATTAAT 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 795
Psp1406I AACGTT 1 cut(s) 423
Psp6I CCWGG 4 cut(s) 244, 585, 786, 915
PspGI CCWGG 4 cut(s) 244, 585, 786, 915
PspPI GGNCC 1 cut(s) 410
PsuI RGATCY 1 cut(s) 569
RsaI GTAC 2 cut(s) 86, 399
RsaNI GTAC 2 cut(s) 85, 398
RseI CAYNNNNRTG 3 cut(s) 97, 192, 405
SacI GAGCTC 1 cut(s) 795
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 3 cut(s) 63, 147, 318
SatI GCNGC 4 cut(s) 141, 381, 468, 528
Sau3AI GATC 2 cut(s) 310, 569
Sau96I GGNCC 1 cut(s) 410
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 5 cut(s) 246, 345, 587, 788, 917
SduI GDGCHC 2 cut(s) 613, 795
SetI ASST 9 cut(s) 75, 330, 382, 426, 479, 524, 699, 714, 795
SfaNI GCATC 5 cut(s) 208, 584, 624, 628, 805
SfcI CTRYAG 1 cut(s) 393
Sfr274I CTCGAG 1 cut(s) 517
SfuI TTCGAA 1 cut(s) 858
SlaI CTCGAG 1 cut(s) 517
SmiMI CAYNNNNRTG 3 cut(s) 97, 192, 405
SmlI CTYRAG 3 cut(s) 329, 517, 544
SmoI CTYRAG 3 cut(s) 329, 517, 544
SpeI ACTAGT 1 cut(s) 449
SphI GCATGC 1 cut(s) 342
Sse9I AATT 7 cut(s) 14, 144, 667, 736, 851, 934, 949
SsiI CCGC 1 cut(s) 181
SspMI CTAG 3 cut(s) 377, 450, 456
SstI GAGCTC 1 cut(s) 795
StyD4I CCNGG 5 cut(s) 244, 343, 585, 786, 915
StyI CCWWGG 1 cut(s) 876
TaiI ACGT 1 cut(s) 426
TaqI TCGA 2 cut(s) 518, 858
TaqII GACCGA 1 cut(s) 277
TasI AATT 7 cut(s) 14, 144, 667, 736, 851, 934, 949
TatI WGTACW 2 cut(s) 84, 397
TfiI GAWTC 3 cut(s) 443, 751, 930
Tru1I TTAA 3 cut(s) 63, 147, 318
Tru9I TTAA 3 cut(s) 63, 147, 318
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 4 cut(s) 140, 380, 467, 527
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 405, 767
TspGWI ACGGA 1 cut(s) 816
VspI ATTAAT 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 906
XapI RAATTY 1 cut(s) 851
XceI RCATGY 2 cut(s) 102, 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 883
XhoI CTCGAG 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 3 cut(s) 377, 450, 456
ZrmI AGTACT 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.