Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012047

Physical Location & Seq

Genomic Coordinates Forward (+)

60798416 .. 60801480

Gene Structure 3065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCCTGCATTCACAGCTACGGCTCCATAGCTTGCTTCTCTGCTTCCTCCTCCGCTTCATTAACAAGAAGGAGATCCACTCCCTCTCCCAAACCTCGAATCCTCTGCTCCGTGGGAGGGAGCGTGGCTGAGCCCCAAGTTACCTCTGTGGCTGAGCCGCTTTTTCTCAATGCGGTTCGGGGTGAAGATGTGGAGAGACCTCCGGTTTGGCTCATGCGGCAAGCTGGGAGGTACATGAAGAGTTACCAAAATCTGTGTGAGAGGCATCCTTCTTTTCGAGAAAGATCTGAAAATGTAGACCTTGTAGTTGAGATTTCGCTGCAGCCCTGGAAGGTTTTCAAGCCTGATGGAGTCATTTTGTTCTCGGACATTCTTACTCCGCTTTCTGGGATGAACATACCATTTGACATTGTTAAAGGCAAGGGTCCGGTGATATTTAATCCTTTGAGTAGTGCTGCGGATGTTGATGAAGTGAGAGAATTTGTTCCTCCAGAGTCAGTTCCGTATGTTGGGGAAGCATTGACAATCTTGCGAAAAGAGGTAGATAATAAGGCAGCGGTGTTGGGTTTTGTTGGTGCTCCTTTCACGTTAGCATCATATGTGGTGGAAGGTGGTTCATCAAAGCACTTCTCAAAAATAAAGAGATTAGCTTTCTCTCAACCCAAGGTCCTCCATGCATTACTTCAGAAATTTGCAACTTCAATGACAACGTATATTCAATACCAAGCTGATAGTGGAGCTCAAGCTGTTCAGATATTTGACTCATGGGCCACAGAACTCAGCCCTGTGGATTTTGAGGAATTCAGTCTTCCATATTTGAAACAAATTGTGGAGGCAGTGAAACTGACTCATCCAGATCTCCCTTTGATTCTTTATGCAAGCGGGTCTGGGGGTTTGCTTGAGAGGCTGGCTTTGACTGGCGTGGATGTAGTTAGCTTGGACTGGAGTGTTGACATGGCTGAAGGTAGAAAGCGATTGGGGCCAAATGTAGCCGTTCAAGGTAATGTGGATCCCGGTGTACTCTTCGGTTCAAAAGACTTCATCACCAGCAGAATACATGATACTGTGAGCAAAGCTGGTAGAGGGAAACATATTTTGAATCTTGGCCATGGAATTGTAGTAGGTACACCTGAGGAGAACGTTGCTCATTTCTTTGAAGTCGCAAAAGACATCAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

393

Amino Acids

42.95

Weight (kDa)

6.52

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URO-D	PF01208	54 - 390	2.9e-122	Uroporphyrinogen decarboxylase (URO-D)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40490
fragaria_vesca	FvH4_7g25624 FvH4_7g25624 FvH4_7g25624
malus_domestica	MD01G1163500.v1.1 MD07G1231500.v1.1
prunus_persica	Prupe.2G261500_v2.0.a1
pyrus_communis	pycom01g17810 pycom07g20930
rosa_chinensis	RchiOBHm_Chr1g0371761
rosa_laevigata	RLG00000026943
rosa_multiflora	Rmu_sc0001755.1_g000052
rosa_roxburghii	Rroxscaffold_4G00285440
rosa_rugosa	Rorug01G0366300
rosa_samantha	Rh1AG376200 Rh1BG339600 Rh1CG352700 Rh1DG370800
rosa_wichuraiana	Rw1G033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	8 cut(s)	54, 158, 173, 217, 380, 458, 557, 882
AclI	AACGTT	1 cut(s)	1140
AclWI	GGATC	3 cut(s)	69, 1004, 1017
AcoI	YGGCCR	1 cut(s)	1105
AcsI	RAATTY	3 cut(s)	479, 689, 800
AcuI	CTGAAG	2 cut(s)	668, 981
AfaI	GTAC	3 cut(s)	233, 1020, 1126
AfiI	CCNNNNNNNGG	3 cut(s)	117, 386, 509
AgsI	TTSAA	8 cut(s)	340, 702, 719, 820, 998, 1032, 1099, 1157
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	9 cut(s)	18, 32, 224, 650, 728, 740, 746, 936, 1076
AluI	AGCT	9 cut(s)	18, 32, 224, 650, 728, 740, 746, 936, 1076
Alw21I	GWGCWC	2 cut(s)	580, 742
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	3 cut(s)	69, 1004, 1017
AoxI	GGCC	3 cut(s)	768, 980, 1105
ApeKI	GCWGC	4 cut(s)	319, 322, 455, 554
ApoI	RAATTY	3 cut(s)	479, 689, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
Asp700I	GAANNNNTTC	2 cut(s)	335, 483
AspS9I	GGNCC	4 cut(s)	425, 667, 768, 980
AsuC2I	CCSGG	1 cut(s)	1014
AsuHPI	GGTGA	3 cut(s)	194, 442, 1036
AvaII	GGWCC	2 cut(s)	425, 667
AxyI	CCTNAGG	1 cut(s)	1131
BalI	TGGCCA	1 cut(s)	1107
BamHI	GGATCC	1 cut(s)	1009
BanII	GRGCYC	2 cut(s)	135, 742
BbsI	GAAGAC	1 cut(s)	800
Bbv12I	GWGCWC	2 cut(s)	580, 742
BbvI	GCAGC	4 cut(s)	306, 334, 442, 566
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	2 cut(s)	37, 977
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BciT130I	CCWGG	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	1014
BcoDI	GTCTC	1 cut(s)	190
BfmI	CTRYAG	1 cut(s)	320
BglII	AGATCT	2 cut(s)	284, 856
BisI	GCNGC	6 cut(s)	158, 218, 320, 323, 456, 555
BlpI	GCTNAGC	2 cut(s)	129, 153
BlsI	GCNGC	6 cut(s)	159, 219, 321, 324, 457, 556
Bme1390I	CCNGG	2 cut(s)	328, 1014
Bme18I	GGWCC	2 cut(s)	425, 667
BmgT120I	GGNCC	4 cut(s)	425, 667, 768, 980
BmiI	GGNNCC	4 cut(s)	25, 426, 981, 1011
BmrFI	CCNGG	2 cut(s)	328, 1014
BmsI	GCATC	2 cut(s)	274, 602
BpiI	GAAGAC	1 cut(s)	800
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BpmI	CTGGAG	2 cut(s)	474, 964
Bpu1102I	GCTNAGC	2 cut(s)	129, 153
BpuEI	CTTGAG	2 cut(s)	726, 920
BpuMI	CCSGG	1 cut(s)	1014
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	4 cut(s)	111, 326, 663, 1108
BsaWI	WCCGGW	2 cut(s)	202, 427
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 108, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 386, 509
Bse1I	ACTGG	2 cut(s)	922, 947
Bse21I	CCTNAGG	1 cut(s)	1131
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	4 cut(s)	111, 326, 663, 1108
BseGI	GGATG	5 cut(s)	265, 396, 466, 850, 931
BseLI	CCNNNNNNNGG	3 cut(s)	117, 386, 509
BseMII	CTCAG	4 cut(s)	120, 144, 793, 1122
BseNI	ACTGG	2 cut(s)	922, 947
BseRI	GAGGAG	2 cut(s)	40, 1148
BseXI	GCAGC	4 cut(s)	306, 334, 442, 566
BseYI	CCCAGC	1 cut(s)	224
BshFI	GGCC	3 cut(s)	770, 982, 1107
BsiHKAI	GWGCWC	2 cut(s)	580, 742
BsiSI	CCGG	3 cut(s)	203, 428, 1014
BslI	CCNNNNNNNGG	3 cut(s)	117, 386, 509
BsmAI	GTCTC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	9
BsnI	GGCC	3 cut(s)	770, 982, 1107
Bso31I	GGTCTC	1 cut(s)	190
Bsp1286I	GDGCHC	3 cut(s)	135, 580, 742
Bsp143I	GATC	4 cut(s)	74, 284, 856, 1009
Bsp1720I	GCTNAGC	2 cut(s)	129, 153
Bsp19I	CCATGG	1 cut(s)	1108
BspACI	CCGC	8 cut(s)	54, 158, 173, 217, 380, 458, 557, 882
BspANI	GGCC	3 cut(s)	770, 982, 1107
BspCNI	CTCAG	4 cut(s)	121, 145, 792, 1123
BspLI	GGNNCC	4 cut(s)	25, 426, 981, 1011
BspMAI	CTGCAG	1 cut(s)	324
BspPI	GGATC	3 cut(s)	69, 1004, 1017
BspTNI	GGTCTC	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	922, 947
BssECI	CCNNGG	4 cut(s)	111, 326, 663, 1108
BssMI	GATC	4 cut(s)	74, 284, 856, 1009
BssT1I	CCWWGG	2 cut(s)	663, 1108
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	1066
Bst6I	CTCTTC	2 cut(s)	233, 1028
BstC8I	GCNNGC	4 cut(s)	34, 222, 880, 909
BstDEI	CTNAG	4 cut(s)	129, 153, 779, 1131
BstDSI	CCRYGG	2 cut(s)	111, 1108
BstF5I	GGATG	5 cut(s)	265, 396, 466, 850, 931
BstKTI	GATC	4 cut(s)	77, 287, 859, 1012
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	4 cut(s)	74, 284, 856, 1009
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 217, 904, 979
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	326, 1012
BstSFI	CTRYAG	1 cut(s)	320
BstV1I	GCAGC	4 cut(s)	306, 334, 442, 566
BstV2I	GAAGAC	1 cut(s)	800
BstX2I	RGATCY	4 cut(s)	74, 284, 856, 1009
BstYI	RGATCY	4 cut(s)	74, 284, 856, 1009
Bsu36I	CCTNAGG	1 cut(s)	1131
BsuRI	GGCC	3 cut(s)	770, 982, 1107
BtgI	CCRYGG	2 cut(s)	111, 1108
BtsCI	GGATG	5 cut(s)	265, 396, 466, 850, 931
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	1 cut(s)	843
Cac8I	GCNNGC	4 cut(s)	34, 222, 880, 909
Cfr13I	GGNCC	4 cut(s)	425, 667, 768, 980
Csp6I	GTAC	3 cut(s)	232, 1019, 1125
CviAII	CATG	7 cut(s)	214, 235, 674, 765, 955, 1058, 1109
CviQI	GTAC	3 cut(s)	232, 1019, 1125
DdeI	CTNAG	4 cut(s)	129, 153, 779, 1131
DpnI	GATC	4 cut(s)	76, 286, 858, 1011
DpnII	GATC	4 cut(s)	74, 284, 856, 1009
EaeI	YGGCCR	1 cut(s)	1105
Eam1104I	CTCTTC	2 cut(s)	233, 1028
EarI	CTCTTC	2 cut(s)	233, 1028
Ecl136II	GAGCTC	1 cut(s)	740
Eco130I	CCWWGG	2 cut(s)	663, 1108
Eco24I	GRGCYC	2 cut(s)	135, 742
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	425, 667
Eco53kI	GAGCTC	1 cut(s)	740
Eco57I	CTGAAG	2 cut(s)	668, 981
Eco81I	CCTNAGG	1 cut(s)	1131
EcoICRI	GAGCTC	1 cut(s)	740
EcoO109I	RGGNCCY	1 cut(s)	667
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	2 cut(s)	663, 1108
EcoT22I	ATGCAT	1 cut(s)	679
EcoT38I	GRGCYC	2 cut(s)	135, 742
ErhI	CCWWGG	2 cut(s)	663, 1108
FaeI	CATG	7 cut(s)	217, 238, 677, 768, 958, 1061, 1112
FatI	CATG	7 cut(s)	213, 234, 673, 764, 954, 1057, 1108
FauI	CCCGC	1 cut(s)	875
FauNDI	CATATG	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	6 cut(s)	158, 218, 320, 323, 456, 555
FokI	GGATG	5 cut(s)	252, 403, 473, 837, 938
FriOI	GRGCYC	2 cut(s)	135, 742
Fsp4HI	GCNGC	6 cut(s)	158, 218, 320, 323, 456, 555
GluI	GCNGC	6 cut(s)	158, 218, 320, 323, 456, 555
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	2 cut(s)	474, 964
HaeIII	GGCC	3 cut(s)	770, 982, 1107
HapII	CCGG	3 cut(s)	203, 428, 1014
Hin1II	CATG	7 cut(s)	217, 238, 677, 768, 958, 1061, 1112
HincII	GTYRAC	1 cut(s)	952
HindII	GTYRAC	1 cut(s)	952
HinfI	GANTC	7 cut(s)	99, 351, 494, 761, 847, 868, 1099
HpaII	CCGG	3 cut(s)	203, 428, 1014
HphI	GGTGA	3 cut(s)	194, 442, 1036
Hpy166II	GTNNAC	4 cut(s)	298, 952, 1019, 1127
Hpy188I	TCNGA	5 cut(s)	289, 367, 687, 753, 1175
Hpy188III	TCNNGA	3 cut(s)	278, 491, 854
Hpy8I	GTNNAC	4 cut(s)	298, 952, 1019, 1127
HpyAV	CCTTC	5 cut(s)	63, 279, 325, 602, 956
HpyCH4III	ACNGT	1 cut(s)	1066
HpyCH4IV	ACGT	3 cut(s)	587, 710, 1140
HpyCH4V	TGCA	5 cut(s)	9, 322, 677, 695, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 217, 904, 979
HpyF3I	CTNAG	4 cut(s)	129, 153, 779, 1131
HpySE526I	ACGT	3 cut(s)	587, 710, 1140
Hsp92II	CATG	7 cut(s)	217, 238, 677, 768, 958, 1061, 1112
Kzo9I	GATC	4 cut(s)	74, 284, 856, 1009
LmnI	GCTCC	5 cut(s)	29, 113, 120, 583, 737
Lsp1109I	GCAGC	4 cut(s)	306, 334, 442, 566
LweI	GCATC	2 cut(s)	274, 602
MaeII	ACGT	3 cut(s)	587, 710, 1140
MaeIII	GTNAC	2 cut(s)	139, 242
MalI	GATC	4 cut(s)	76, 286, 858, 1011
MboI	GATC	4 cut(s)	74, 284, 856, 1009
MboII	GAAGA	4 cut(s)	197, 250, 800, 1015
MflI	RGATCY	4 cut(s)	74, 284, 856, 1009
MhlI	GDGCHC	3 cut(s)	135, 580, 742
MlsI	TGGCCA	1 cut(s)	1107
MluCI	AATT	5 cut(s)	479, 689, 800, 825, 1113
MluNI	TGGCCA	1 cut(s)	1107
MlyI	GAGTC	4 cut(s)	360, 503, 755, 841
Mox20I	TGGCCA	1 cut(s)	1107
Mph1103I	ATGCAT	1 cut(s)	679
MroXI	GAANNNNTTC	2 cut(s)	335, 483
MscI	TGGCCA	1 cut(s)	1107
MseI	TTAA	3 cut(s)	62, 414, 438
Msp20I	TGGCCA	1 cut(s)	1107
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	3 cut(s)	203, 428, 1014
MspR9I	CCNGG	2 cut(s)	328, 1014
Mva1269I	GAATGC	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	4 cut(s)	15, 217, 904, 979
NciI	CCSGG	1 cut(s)	1014
NcoI	CCATGG	1 cut(s)	1108
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	4 cut(s)	74, 284, 856, 1009
NlaIII	CATG	7 cut(s)	217, 238, 677, 768, 958, 1061, 1112
NlaIV	GGNNCC	4 cut(s)	25, 426, 981, 1011
NsiI	ATGCAT	1 cut(s)	679
PctI	GAATGC	1 cut(s)	9
PdmI	GAANNNNTTC	2 cut(s)	335, 483
PfeI	GAWTC	3 cut(s)	99, 868, 1099
PkrI	GCNGC	6 cut(s)	159, 219, 321, 324, 457, 556
PleI	GAGTC	4 cut(s)	359, 502, 755, 841
PpsI	GAGTC	4 cut(s)	359, 502, 755, 841
PpuMI	RGGWCCY	1 cut(s)	667
Psp124BI	GAGCTC	1 cut(s)	742
Psp1406I	AACGTT	1 cut(s)	1140
Psp5II	RGGWCCY	1 cut(s)	667
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	4 cut(s)	25, 426, 981, 1011
PspPI	GGNCC	4 cut(s)	425, 667, 768, 980
PspPPI	RGGWCCY	1 cut(s)	667
PstI	CTGCAG	1 cut(s)	324
PsuI	RGATCY	4 cut(s)	74, 284, 856, 1009
RsaI	GTAC	3 cut(s)	233, 1020, 1126
RsaNI	GTAC	3 cut(s)	232, 1019, 1125
SacI	GAGCTC	1 cut(s)	742
SaqAI	TTAA	3 cut(s)	62, 414, 438
SatI	GCNGC	6 cut(s)	158, 218, 320, 323, 456, 555
Sau3AI	GATC	4 cut(s)	74, 284, 856, 1009
Sau96I	GGNCC	4 cut(s)	425, 667, 768, 980
SchI	GAGTC	4 cut(s)	360, 503, 755, 841
ScrFI	CCNGG	2 cut(s)	328, 1014
SduI	GDGCHC	3 cut(s)	135, 580, 742
SfaNI	GCATC	2 cut(s)	274, 602
SfcI	CTRYAG	1 cut(s)	320
SinI	GGWCC	2 cut(s)	425, 667
SmlI	CTYRAG	2 cut(s)	741, 899
SmoI	CTYRAG	2 cut(s)	741, 899
Sse9I	AATT	5 cut(s)	479, 689, 800, 825, 1113
SsiI	CCGC	8 cut(s)	54, 158, 173, 217, 380, 458, 557, 882
SstI	GAGCTC	1 cut(s)	742
StyD4I	CCNGG	2 cut(s)	326, 1012
StyI	CCWWGG	2 cut(s)	663, 1108
TaaI	ACNGT	1 cut(s)	1066
TaiI	ACGT	3 cut(s)	590, 713, 1143
TaqI	TCGA	2 cut(s)	97, 277
TasI	AATT	5 cut(s)	479, 689, 800, 825, 1113
TatI	WGTACW	1 cut(s)	1018
TauI	GCSGC	2 cut(s)	160, 220
TfiI	GAWTC	3 cut(s)	99, 868, 1099
Tru1I	TTAA	3 cut(s)	62, 414, 438
Tru9I	TTAA	3 cut(s)	62, 414, 438
TscAI	CASTG	1 cut(s)	843
TseI	GCWGC	4 cut(s)	319, 322, 455, 554
TspDTI	ATGAA	6 cut(s)	48, 251, 407, 483, 606, 1030
TspGWI	ACGGA	2 cut(s)	100, 492
TspRI	CASTG	1 cut(s)	843
VpaK11BI	GGWCC	2 cut(s)	425, 667
XapI	RAATTY	3 cut(s)	479, 689, 800
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XmiI	GTMKAC	1 cut(s)	297
XmnI	GAANNNNTTC	2 cut(s)	335, 483
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.