RchiOBHm_Chr1g0374991

breast cancer carboxy-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005466
Physical Location & Seq
Forward (+)
62586121 .. 62589599
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGCTATTATGGCTGAGCGCTTTATTGAAGCAGGTTATAGCTGCTATCACTTACCAAATAGTTCCCACTGACACACAGTACGCTGAGATACCTATTGCTGCTGTCAGTTCAATGTACCAACACAAGGGATTTGGTAGCTCCTTGCTCCTGGAATTGAAAAAGAGACTTCAAAGTGTTGGTATATGCACAATATTCTGTTGGGGAGACAAGGAATCTGAAGGGTTTTGGCTCAAACAGATCAGAATGACAAGGATTTGGATCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 BRCT RTT107_BRCT_5

Protein Analysis

88

Amino Acids

10.03

Weight (kDa)

9.06

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 2 cut(s) 80, 116
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 4 cut(s) 28, 111, 157, 170
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 2 cut(s) 41, 138
AluI AGCT 2 cut(s) 41, 138
Alw26I GTCTC 2 cut(s) 157, 198
AlwI GGATC 1 cut(s) 266
Aor51HI AGCGCT 1 cut(s) 19
ApeKI GCWGC 2 cut(s) 41, 98
AspLEI GCGC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 28, 85
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 157, 198
BfoI RGCGCY 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 2 cut(s) 42, 99
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 2 cut(s) 43, 100
Bme1390I CCNGG 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 257
BseBI CCWGG 1 cut(s) 149
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 2 cut(s) 5, 75
BseXI GCAGC 2 cut(s) 28, 85
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 2 cut(s) 157, 198
Bsp143I GATC 2 cut(s) 237, 258
Bsp1720I GCTNAGC 1 cut(s) 14
BspCNI CTCAG 2 cut(s) 6, 76
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 266
BssMI GATC 2 cut(s) 237, 258
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 14, 84
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 2 cut(s) 240, 261
BstMAI GTCTC 2 cut(s) 157, 198
BstMBI GATC 2 cut(s) 237, 258
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 28, 85
BtsIMutI CAGTG 1 cut(s) 66
BveI ACCTGC 1 cut(s) 22
CfoI GCGC 1 cut(s) 20
Csp6I GTAC 2 cut(s) 79, 115
CviJI RGCY 4 cut(s) 13, 41, 138, 229
CviKI_1 RGCY 4 cut(s) 13, 41, 138, 229
CviQI GTAC 2 cut(s) 79, 115
DdeI CTNAG 2 cut(s) 14, 84
DpnI GATC 2 cut(s) 239, 260
DpnII GATC 2 cut(s) 237, 258
Eco47III AGCGCT 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 147
FaiI YATR 4 cut(s) 10, 38, 182, 184
Fnu4HI GCNGC 2 cut(s) 42, 99
Fsp4HI GCNGC 2 cut(s) 42, 99
GlaI GCGC 1 cut(s) 19
GluI GCNGC 2 cut(s) 42, 99
HaeII RGCGCY 1 cut(s) 21
HhaI GCGC 1 cut(s) 20
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 1 cut(s) 212
Hpy188I TCNGA 3 cut(s) 217, 242, 263
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 14, 84
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 237, 258
LmnI GCTCC 2 cut(s) 143, 150
LpnPI CCDG 3 cut(s) 17, 134, 161
Lsp1109I GCAGC 2 cut(s) 28, 85
MalI GATC 2 cut(s) 239, 260
MboI GATC 2 cut(s) 237, 258
MluCI AATT 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 237, 258
PfeI GAWTC 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 2 cut(s) 43, 100
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
RsaI GTAC 2 cut(s) 80, 116
RsaNI GTAC 2 cut(s) 79, 115
SatI GCNGC 2 cut(s) 42, 99
Sau3AI GATC 2 cut(s) 237, 258
ScrFI CCNGG 1 cut(s) 149
SetI ASST 4 cut(s) 36, 43, 94, 140
SgeI CNNG 7 cut(s) 44, 136, 154, 160, 161, 220, 261
Sse9I AATT 1 cut(s) 152
SspI AATATT 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 78
TasI AATT 1 cut(s) 152
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 1 cut(s) 73
TseI GCWGC 2 cut(s) 41, 98
TspRI CASTG 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.