RchiOBHm_Chr3g0484121

breast cancer carboxy-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005466
Physical Location & Seq
Forward (+)
30471163 .. 30476639
5477 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44883

Sequence Viewer

Length: 594 bp
ATGTTGATGAATATTGCAGATGATGCAAAGAAAGCAAATCTTACAAAGGTAATCGAGGACCTTGGTGGGGCTATTACATGTAATGGGAGTACAAGTACACATGTTGTTACCGGGAAAGTGAGAACAACTCTGAATTTCTGTACTGCTCTTTGTTCAGGAGCTTGGATCGTTTCTCCCTTTTGGTTGAAAGAAAGCTTTCGTCAAGGAACATACGTTGACGAATCATCTTACATATTACATGATGAAGAATATGTTCTTAAATATGGAGCTGAGCTGAGAGCTGCAGTTCTCAGAGCAAAAGCAAGTCCTCAAGGCTTGCTTAAAGGCTATAATGTGTACATAGCAGCTCATGTTCAACCCCCTGCAAAGATGTTATCTACCATTGTCAGGTCTGCTGGTGGAAATATAATTGGTGGACTGGAAAAAGTAAATGAAGCTTCAAGAACAATATTTGTGGCATGCGAAGAAGACATGGAAGAAGTAGTGTTGGCTGTAAAGAAGGGCATAGGCACTTTTAGCAGTGATTGGCTTATGAACTGTGTCATGAGACAGGAGCTAGACTTAGAGGGCCCCCAGTTTGTACAGTCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 BRCT RTT107_BRCT_5

Protein Analysis

197

Amino Acids

21.48

Weight (kDa)

5.66

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 7 - 66 9.9e-08 BRCA1 C Terminus (BRCT) domain
RTT107_BRCT_5 PF16770 10 - 79 6.9e-07 Regulator of Ty1 transposition protein 107 BRCT domain
BRCT_2 PF16589 106 - 187 3.9e-14 BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 5 cut(s) 91, 97, 142, 338, 582
AfiI CCNNNNNNNGG 2 cut(s) 67, 387
AflIII ACRYGT 2 cut(s) 77, 100
AgsI TTSAA 3 cut(s) 187, 356, 441
AluBI AGCT 8 cut(s) 161, 195, 269, 274, 281, 347, 437, 556
AluI AGCT 8 cut(s) 161, 195, 269, 274, 281, 347, 437, 556
Alw26I GTCTC 1 cut(s) 541
AlwI GGATC 1 cut(s) 173
AoxI GGCC 1 cut(s) 568
ApaI GGGCCC 1 cut(s) 572
ApeKI GCWGC 2 cut(s) 281, 344
ApoI RAATTY 1 cut(s) 133
Asp700I GAANNNNTTC 2 cut(s) 195, 252
AspS9I GGNCC 3 cut(s) 58, 568, 569
AsuC2I CCSGG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 268, 356
BcnI CCSGG 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 541
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 1 cut(s) 282
BisI GCNGC 2 cut(s) 282, 345
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 2 cut(s) 283, 346
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 3 cut(s) 58, 568, 569
BmiI GGNNCC 2 cut(s) 570, 571
BmrFI CCNGG 1 cut(s) 112
BmrI ACTGGG 1 cut(s) 568
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 568
BpiI GAAGAC 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 112, 144
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 387
Bse1I ACTGG 2 cut(s) 423, 574
BseDI CCNNGG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 67, 387
BseMII CTCAG 3 cut(s) 261, 266, 304
BseNI ACTGG 2 cut(s) 423, 574
BseSI GKGCMC 1 cut(s) 572
BseXI GCAGC 2 cut(s) 268, 356
BshFI GGCC 1 cut(s) 570
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 2 cut(s) 67, 387
BsmAI GTCTC 1 cut(s) 541
BsmFI GGGAC 1 cut(s) 571
BsnI GGCC 1 cut(s) 570
Bsp120I GGGCCC 1 cut(s) 568
Bsp1286I GDGCHC 1 cut(s) 572
Bsp1407I TGTACA 2 cut(s) 336, 580
Bsp143I GATC 1 cut(s) 165
Bsp1720I GCTNAGC 1 cut(s) 270
BspANI GGCC 1 cut(s) 570
BspCNI CTCAG 3 cut(s) 262, 267, 303
BspHI TCATGA 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 570, 571
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 173
BsrGI TGTACA 2 cut(s) 336, 580
BsrI ACTGG 2 cut(s) 423, 574
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 539, 585
BstAPI GCANNNNNTGC 1 cut(s) 23
BstAUI TGTACA 2 cut(s) 336, 580
BstC8I GCNNGC 2 cut(s) 317, 460
BstDEI CTNAG 4 cut(s) 270, 275, 290, 562
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 516
BstNSI RCATGY 3 cut(s) 81, 104, 462
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 572
BstV1I GCAGC 2 cut(s) 268, 356
BstV2I GAAGAC 1 cut(s) 474
BsuRI GGCC 1 cut(s) 570
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 317, 460
CciI TCATGA 1 cut(s) 543
Cfr13I GGNCC 3 cut(s) 58, 568, 569
Csp6I GTAC 5 cut(s) 90, 96, 141, 337, 581
CspCI CAANNNNNGTGG 2 cut(s) 435, 470
CviAII CATG 7 cut(s) 78, 101, 239, 350, 459, 472, 544
CviQI GTAC 5 cut(s) 90, 96, 141, 337, 581
DdeI CTNAG 4 cut(s) 270, 275, 290, 562
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 58
EcoO109I RGGNCCY 3 cut(s) 58, 568, 569
EcoT14I CCWWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 572
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 7 cut(s) 81, 104, 242, 353, 462, 475, 547
FalI AAGNNNNNCTT 4 cut(s) 24, 56, 303, 335
FaqI GGGAC 1 cut(s) 571
FatI CATG 7 cut(s) 77, 100, 238, 349, 458, 471, 543
Fnu4HI GCNGC 2 cut(s) 282, 345
FriOI GRGCYC 1 cut(s) 572
Fsp4HI GCNGC 2 cut(s) 282, 345
FspBI CTAG 1 cut(s) 557
GluI GCNGC 2 cut(s) 282, 345
HaeIII GGCC 1 cut(s) 570
HapII CCGG 1 cut(s) 111
Hin1II CATG 7 cut(s) 81, 104, 242, 353, 462, 475, 547
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 2 cut(s) 193, 435
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 111
Hpy166II GTNNAC 4 cut(s) 98, 217, 337, 416
Hpy188I TCNGA 2 cut(s) 132, 293
Hpy188III TCNNGA 3 cut(s) 156, 441, 544
Hpy8I GTNNAC 4 cut(s) 98, 217, 337, 416
HpyAV CCTTC 1 cut(s) 493
HpyCH4III ACNGT 2 cut(s) 539, 585
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 4 cut(s) 17, 26, 284, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 516
HpyF3I CTNAG 4 cut(s) 270, 275, 290, 562
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 7 cut(s) 81, 104, 242, 353, 462, 475, 547
Kzo9I GATC 1 cut(s) 165
LmnI GCTCC 3 cut(s) 158, 266, 553
LpnPI CCDG 8 cut(s) 124, 141, 373, 375, 381, 404, 536, 587
Lsp1109I GCAGC 2 cut(s) 268, 356
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 557
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 4 cut(s) 257, 476, 479, 488
MhlI GDGCHC 1 cut(s) 572
MluCI AATT 2 cut(s) 133, 408
MnlI CCTC 3 cut(s) 49, 318, 559
MroXI GAANNNNTTC 2 cut(s) 195, 252
MseI TTAA 2 cut(s) 258, 321
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 112
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 516
NciI CCSGG 1 cut(s) 112
NdeII GATC 1 cut(s) 165
NlaIII CATG 7 cut(s) 81, 104, 242, 353, 462, 475, 547
NlaIV GGNNCC 2 cut(s) 570, 571
NspI RCATGY 3 cut(s) 81, 104, 462
PaeI GCATGC 1 cut(s) 462
PagI TCATGA 1 cut(s) 543
PciI ACATGT 2 cut(s) 77, 100
PdmI GAANNNNTTC 2 cut(s) 195, 252
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 283, 346
PpuMI RGGWCCY 1 cut(s) 58
PscI ACATGT 2 cut(s) 77, 100
Psp5II RGGWCCY 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 570, 571
PspOMI GGGCCC 1 cut(s) 568
PspPI GGNCC 3 cut(s) 58, 568, 569
PspPPI RGGWCCY 1 cut(s) 58
PstI CTGCAG 1 cut(s) 286
RsaI GTAC 5 cut(s) 91, 97, 142, 338, 582
RsaNI GTAC 5 cut(s) 90, 96, 141, 337, 581
SaqAI TTAA 2 cut(s) 258, 321
SatI GCNGC 2 cut(s) 282, 345
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 3 cut(s) 58, 568, 569
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 1 cut(s) 572
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
SphI GCATGC 1 cut(s) 462
Sse9I AATT 2 cut(s) 133, 408
SspI AATATT 2 cut(s) 13, 450
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 2 cut(s) 539, 585
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 54
TasI AATT 2 cut(s) 133, 408
TatI WGTACW 5 cut(s) 89, 95, 140, 336, 580
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 258, 321
Tru9I TTAA 2 cut(s) 258, 321
TscAI CASTG 1 cut(s) 526
TseI GCWGC 2 cut(s) 281, 344
TspDTI ATGAA 4 cut(s) 23, 258, 447, 548
TspRI CASTG 1 cut(s) 526
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 133
XceI RCATGY 3 cut(s) 81, 104, 462
XmnI GAANNNNTTC 2 cut(s) 195, 252
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.