Rh3AG258500

breast cancer carboxy-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0005466
Physical Location & Seq
Forward (+)
28665219 .. 28666935
1717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG258500.1

Sequence Viewer

Length: 639 bp
ATGCCAATAGCTGTAGCAAATCCTATCTCCAGGAAATATTGCACTTTGCTTTTGCAGTCTCATTCTTTGCGTCATTCCCAAGAGGTTATAGCTGCTATCACTTACCAAATAGTTCCCACTGACACACAGTACGCTGAGATACCTATTGCTGCTGTCAGTTCAATGTACCAACACAAGGGATTTGGTAGCTCCTTGTTCCTGGAATTGAAAAAGAGACTTCAAAGTGTTGGTATATGCACAATATTCTGTTGGGGAGACAAGGAATCTGAAGGGTTTTGGCTCAAACAGGGTTTCGTATCAATAGCTGAGGTAGATACTAAGGGTAGACGCTGCAGGCCACCTATTAAAGCTGATATTCGTAGAGCATTATGCTTTCCAGGTGGTTCAACCCTCATGGTTTTACATCTTAAGCAGCAGGCTTCAGCAAATACTCTAGACTCTTTGGAGTTGGGCGCTTCTTCTAAGCCTACAGGGAATTCGTCATCTGATGCTCTCACCAGAGAGGACTCCAGCAAGTTGGTCAGTGGTGCAAAATTATCCAATATTGAAGACAATGGTGATATAAACCACTGTTCTTCCAAACAAGGCAAAGTTGCAAAGAGAAAGGTCTGGAAATCTTCAATATCATCACTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 BRCT RTT107_BRCT_5

Protein Analysis

212

Amino Acids

23.14

Weight (kDa)

9.42

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 23 - 106 2.8e-06 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 325
AcsI RAATTY 1 cut(s) 475
AcuI CTGAAG 2 cut(s) 288, 405
AfaI GTAC 2 cut(s) 131, 167
AfiI CCNNNNNNNGG 1 cut(s) 175
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 6 cut(s) 162, 208, 221, 387, 548, 621
AjnI CCWGG 3 cut(s) 29, 198, 376
AluBI AGCT 5 cut(s) 11, 92, 189, 305, 350
AluI AGCT 5 cut(s) 11, 92, 189, 305, 350
Alw26I GTCTC 3 cut(s) 63, 208, 249
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 4 cut(s) 92, 149, 330, 412
ApoI RAATTY 1 cut(s) 475
AspLEI GCGC 1 cut(s) 455
AsuHPI GGTGA 2 cut(s) 487, 569
BbsI GAAGAC 1 cut(s) 555
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 4 cut(s) 79, 136, 317, 424
BciT130I CCWGG 3 cut(s) 31, 200, 378
BcoDI GTCTC 3 cut(s) 63, 208, 249
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 3 cut(s) 12, 331, 468
BfoI RGCGCY 1 cut(s) 456
BfrI CTTAAG 1 cut(s) 407
BisI GCNGC 4 cut(s) 93, 150, 331, 413
BlsI GCNGC 4 cut(s) 94, 151, 332, 414
Bme1390I CCNGG 3 cut(s) 31, 200, 378
BmrFI CCNGG 3 cut(s) 31, 200, 378
BmsI GCATC 1 cut(s) 478
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 2 cut(s) 13, 493
Bpu10I CCTNAGC 1 cut(s) 306
Bsc4I CCNNNNNNNGG 1 cut(s) 175
BseBI CCWGG 3 cut(s) 31, 200, 378
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 2 cut(s) 126, 297
BseXI GCAGC 4 cut(s) 79, 136, 317, 424
BshFI GGCC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 3 cut(s) 63, 208, 249
BsnI GGCC 1 cut(s) 337
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 2 cut(s) 127, 298
BspMAI CTGCAG 1 cut(s) 335
BspTI CTTAAG 1 cut(s) 407
Bst2UI CCWGG 3 cut(s) 31, 200, 378
Bst4CI ACNGT 2 cut(s) 129, 572
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 335, 417
BstDEI CTNAG 4 cut(s) 135, 306, 318, 462
BstH2I RGCGCY 1 cut(s) 456
BstHHI GCGC 1 cut(s) 455
BstMAI GTCTC 3 cut(s) 63, 208, 249
BstNI CCWGG 3 cut(s) 31, 200, 378
BstSCI CCNGG 3 cut(s) 29, 198, 376
BstSFI CTRYAG 3 cut(s) 12, 331, 468
BstV1I GCAGC 4 cut(s) 79, 136, 317, 424
BstV2I GAAGAC 1 cut(s) 555
BstXI CCANNNNNNTGG 1 cut(s) 517
BsuRI GGCC 1 cut(s) 337
BtsIMutI CAGTG 4 cut(s) 117, 529, 568, 629
Cac8I GCNNGC 2 cut(s) 335, 417
CfoI GCGC 1 cut(s) 455
CseI GACGC 2 cut(s) 59, 336
Csp6I GTAC 2 cut(s) 130, 166
CviAII CATG 1 cut(s) 394
CviJI RGCY 9 cut(s) 11, 92, 189, 280, 305, 337, 350, 419, 466
CviKI_1 RGCY 9 cut(s) 11, 92, 189, 280, 305, 337, 350, 419, 466
CviQI GTAC 2 cut(s) 130, 166
DdeI CTNAG 4 cut(s) 135, 306, 318, 462
Eco57I CTGAAG 2 cut(s) 288, 405
EcoRI GAATTC 1 cut(s) 475
EcoRII CCWGG 3 cut(s) 29, 198, 376
FaeI CATG 1 cut(s) 397
FaiI YATR 6 cut(s) 89, 233, 235, 370, 395, 563
FatI CATG 1 cut(s) 393
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 4 cut(s) 93, 150, 331, 413
Fsp4HI GCNGC 4 cut(s) 93, 150, 331, 413
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 454
GluI GCNGC 4 cut(s) 93, 150, 331, 413
GsuI CTGGAG 2 cut(s) 13, 493
HaeII RGCGCY 1 cut(s) 456
HaeIII GGCC 1 cut(s) 337
HgaI GACGC 2 cut(s) 59, 336
HhaI GCGC 1 cut(s) 455
Hin1II CATG 1 cut(s) 397
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HinfI GANTC 3 cut(s) 263, 437, 506
HphI GGTGA 2 cut(s) 487, 569
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 268, 487
Hpy188III TCNNGA 2 cut(s) 434, 610
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 2 cut(s) 129, 572
HpyCH4V TGCA 6 cut(s) 42, 55, 237, 333, 530, 596
HpyF3I CTNAG 4 cut(s) 135, 306, 318, 462
Hsp92II CATG 1 cut(s) 397
HspAI GCGC 1 cut(s) 453
LmnI GCTCC 1 cut(s) 194
Lsp1109I GCAGC 4 cut(s) 79, 136, 317, 424
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 434
MboII GAAGA 4 cut(s) 450, 560, 567, 609
MluCI AATT 3 cut(s) 203, 475, 533
MlyI GAGTC 2 cut(s) 431, 500
MnlI CCTC 4 cut(s) 76, 301, 401, 496
MseI TTAA 2 cut(s) 345, 408
MspCI CTTAAG 1 cut(s) 407
MspR9I CCNGG 3 cut(s) 31, 200, 378
MvaI CCWGG 3 cut(s) 31, 200, 378
NlaIII CATG 1 cut(s) 397
PfeI GAWTC 1 cut(s) 263
PfoI TCCNGGA 2 cut(s) 29, 198
PkrI GCNGC 4 cut(s) 94, 151, 332, 414
PleI GAGTC 2 cut(s) 431, 500
PpsI GAGTC 2 cut(s) 431, 500
Psp6I CCWGG 3 cut(s) 29, 198, 376
PspGI CCWGG 3 cut(s) 29, 198, 376
PstI CTGCAG 1 cut(s) 335
RsaI GTAC 2 cut(s) 131, 167
RsaNI GTAC 2 cut(s) 130, 166
SaqAI TTAA 2 cut(s) 345, 408
SatI GCNGC 4 cut(s) 93, 150, 331, 413
SchI GAGTC 2 cut(s) 431, 500
ScrFI CCNGG 3 cut(s) 31, 200, 378
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 3 cut(s) 12, 331, 468
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 3 cut(s) 203, 475, 533
SspI AATATT 3 cut(s) 38, 243, 544
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 3 cut(s) 29, 198, 376
TaaI ACNGT 2 cut(s) 129, 572
TasI AATT 3 cut(s) 203, 475, 533
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 345, 408
Tru9I TTAA 2 cut(s) 345, 408
TscAI CASTG 4 cut(s) 124, 529, 575, 636
TseI GCWGC 4 cut(s) 92, 149, 330, 412
TspRI CASTG 4 cut(s) 124, 529, 575, 636
Vha464I CTTAAG 1 cut(s) 407
XapI RAATTY 1 cut(s) 475
XbaI TCTAGA 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 325
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.