Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005466

Physical Location & Seq

Genomic Coordinates Forward (+)

30469706 .. 30471161

Gene Structure 1456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44882

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTACCAACACAAGGGATTTGGTAGCTCCTTGTTCCTGGAATTGAAAAAGAGACTTCAAAGTGTTGGTATATGCACAATATTCTGTTGGGGAGACAAGGAATCTGAAGGGTTTTGGCTCAAACAGGGTTTCGTATCAATAGCTGAGGTAGATACTAAGGGTAGACGCTGCAGGCCACCTATTAAAGCTGATATTCGTAGAGCATTATGCTTTCCAGGTGGTTCAACCCTCATGGTTTTACATCTTAAGCAGCAGGCTTCAGCAAATACTCTAGACTCTTTGGAGTTGGGCGCTTCTTCTAAGCCTACAGGGAATTCGTCATCTGATGCTCTCACCAGAGAGGACTCCAGCAAGTTGGTCAGTGGTGCAAAATTATCCAATATTGAAGACAATGGTGATATAAACCACTGTTCTTCCAAACAAGGCAAAGTTGCAAAGAGAAAGGTCTGGAAATCTTCAATATCATCACTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10 BRCT RTT107_BRCT_5

Protein Analysis

158

Amino Acids

17.25

Weight (kDa)

9.59

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41450 AT2G41450
fragaria_vesca	FvH4_6g24820 FvH4_6g24820 FvH4_6g24820 FvH4_6g24820 FvH4_6g24820 FvH4_6g24820
prunus_persica	Prupe.7G049600_v2.0.a1
pyrus_communis	pycom12g07350
rosa_chinensis	RchiOBHm_Chr1g0374991 RchiOBHm_Chr3g0484101 RchiOBHm_Chr3g0484111 RchiOBHm_Chr3g0484121 RchiOBHm_Chr3g0484561
rosa_laevigata	RLG00000023220
rosa_multiflora	Rmu_sc0000295.1_g000037 Rmu_sc0016014.1_g000007
rosa_roxburghii	Rroxscaffold_5G00338940 Rroxscaffold_6G00397640
rosa_rugosa	Rorug03G0211700
rosa_samantha	Rh3AG258500 Rh3AG258600 Rh3AG262400 Rh3BG297700 Rh3CG294700 Rh3DG291000 Rh5AG220100 Rh7AG088300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	2 cut(s)	126, 243
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	13
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	5 cut(s)	46, 59, 225, 386, 459
AjnI	CCWGG	2 cut(s)	36, 214
AluBI	AGCT	3 cut(s)	27, 143, 188
AluI	AGCT	3 cut(s)	27, 143, 188
Alw26I	GTCTC	2 cut(s)	46, 87
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	168, 250
ApoI	RAATTY	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	325, 407
BbsI	GAAGAC	1 cut(s)	393
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	155, 262
BciT130I	CCWGG	2 cut(s)	38, 216
BcoDI	GTCTC	2 cut(s)	46, 87
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	2 cut(s)	169, 306
BfoI	RGCGCY	1 cut(s)	294
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	2 cut(s)	169, 251
BlsI	GCNGC	2 cut(s)	170, 252
Bme1390I	CCNGG	2 cut(s)	38, 216
BmrFI	CCNGG	2 cut(s)	38, 216
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
BseBI	CCWGG	2 cut(s)	38, 216
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	155, 262
BshFI	GGCC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	2 cut(s)	46, 87
BsnI	GGCC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	245
Bst2UI	CCWGG	2 cut(s)	38, 216
Bst4CI	ACNGT	1 cut(s)	410
BstAFI	CTTAAG	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	173, 255
BstDEI	CTNAG	3 cut(s)	144, 156, 300
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstMAI	GTCTC	2 cut(s)	46, 87
BstNI	CCWGG	2 cut(s)	38, 216
BstSCI	CCNGG	2 cut(s)	36, 214
BstSFI	CTRYAG	2 cut(s)	169, 306
BstV1I	GCAGC	2 cut(s)	155, 262
BstV2I	GAAGAC	1 cut(s)	393
BstXI	CCANNNNNNTGG	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	175
BtsIMutI	CAGTG	3 cut(s)	367, 406, 467
Cac8I	GCNNGC	2 cut(s)	173, 255
CfoI	GCGC	1 cut(s)	293
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	7 cut(s)	27, 118, 143, 175, 188, 257, 304
CviKI_1	RGCY	7 cut(s)	27, 118, 143, 175, 188, 257, 304
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	3 cut(s)	144, 156, 300
Eco57I	CTGAAG	2 cut(s)	126, 243
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	36, 214
FaeI	CATG	1 cut(s)	235
FaiI	YATR	5 cut(s)	71, 73, 208, 233, 401
FatI	CATG	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	169, 251
Fsp4HI	GCNGC	2 cut(s)	169, 251
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	2 cut(s)	169, 251
GsuI	CTGGAG	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	175
HgaI	GACGC	1 cut(s)	174
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	3 cut(s)	101, 275, 344
HphI	GGTGA	2 cut(s)	325, 407
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	106, 325
Hpy188III	TCNNGA	2 cut(s)	272, 448
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	4 cut(s)	75, 171, 368, 434
HpyF3I	CTNAG	3 cut(s)	144, 156, 300
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	2 cut(s)	155, 262
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	272
MboII	GAAGA	4 cut(s)	288, 398, 405, 447
MluCI	AATT	3 cut(s)	41, 313, 371
MlyI	GAGTC	2 cut(s)	269, 338
MnlI	CCTC	3 cut(s)	139, 239, 334
MseI	TTAA	2 cut(s)	183, 246
MspCI	CTTAAG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	38, 216
MvaI	CCWGG	2 cut(s)	38, 216
NlaIII	CATG	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	170, 252
PleI	GAGTC	2 cut(s)	269, 338
PpsI	GAGTC	2 cut(s)	269, 338
Psp6I	CCWGG	2 cut(s)	36, 214
PspGI	CCWGG	2 cut(s)	36, 214
PstI	CTGCAG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	183, 246
SatI	GCNGC	2 cut(s)	169, 251
SchI	GAGTC	2 cut(s)	269, 338
ScrFI	CCNGG	2 cut(s)	38, 216
SetI	ASST	7 cut(s)	29, 145, 150, 181, 190, 220, 447
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	2 cut(s)	169, 306
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	3 cut(s)	41, 313, 371
SspI	AATATT	2 cut(s)	81, 382
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	36, 214
TaaI	ACNGT	1 cut(s)	410
TasI	AATT	3 cut(s)	41, 313, 371
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	183, 246
Tru9I	TTAA	2 cut(s)	183, 246
TscAI	CASTG	3 cut(s)	367, 413, 474
TseI	GCWGC	2 cut(s)	168, 250
TspRI	CASTG	3 cut(s)	367, 413, 474
Vha464I	CTTAAG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	313
XbaI	TCTAGA	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	163
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.