Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005466

Physical Location & Seq

Genomic Coordinates Reverse (-)

18980484 .. 18982685

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0211700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTTGTTTATAACGCTGTGGGATTGTTTGAGAGTTTTGGTGCTGCTGATTCAAATTACTCGATAGATGAGAGTTCTTCTCAAGCACAAGGCGATCACAGCTTACTTGAGGCTTTTGATAACGCTTACAAAATTGGTTCGAGTTCAAGTATGAAGACAGAATTGAGCAAGTATTTGGATGAAGTAAGGCTAGAAAGAAAGCAAGAGTTGGATGTACTTTCTTGGTGGAAAATGGAGCAAATTCGATATCCTATTCTTTTTCATCTAGCTCGTGATGTGCTCACAATTCCTATTTCTACCGTTGCATCTGAATCGGCCTTTAGCATTGGCGGGAGAGTTTTAGATCAATACCGCAGATCACTGTTGCCTGACACAGTTCAAGCTCTGCTTTGTACTCGAGATTGGATTTTTGGTAACAAAGAAAAAGAGCGCGCTGAATTGGAGGATCTTACTGAAGACGTATTTGATTTGACATTGCAAGATAGATCTGGAGAAGGAGAAAGCCGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004326 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009791 GO:0009853 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0042398 GO:0042558 GO:0042559 GO:0043094 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046900 GO:0046901 GO:0048856 GO:0051186 GO:0051188 GO:0071704 GO:0090351 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko01523 map00790 map01100 map01523

Pfam Domains

Protein Families

Mur_ligase_M

Protein Analysis

170

Amino Acids

19.36

Weight (kDa)

4.58

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimer_Tnp_hAT	PF05699	54 - 136	1.8e-32	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41450 AT2G41450
fragaria_vesca	FvH4_6g24820 FvH4_6g24820 FvH4_6g24820 FvH4_6g24820 FvH4_6g24820 FvH4_6g24820
prunus_persica	Prupe.7G049600_v2.0.a1
pyrus_communis	pycom12g07350
rosa_chinensis	RchiOBHm_Chr1g0374991 RchiOBHm_Chr3g0484101 RchiOBHm_Chr3g0484111 RchiOBHm_Chr3g0484121 RchiOBHm_Chr3g0484561
rosa_laevigata	RLG00000023220
rosa_multiflora	Rmu_sc0000295.1_g000037 Rmu_sc0016014.1_g000007
rosa_roxburghii	Rroxscaffold_5G00338940 Rroxscaffold_6G00397640
rosa_rugosa	Rorug03G0211700
rosa_samantha	Rh3AG258500 Rh3AG258600 Rh3AG262400 Rh3BG297700 Rh3CG294700 Rh3DG291000 Rh5AG220100 Rh7AG088300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AccII	CGCG	1 cut(s)	432
AciI	CCGC	3 cut(s)	330, 352, 505
AclWI	GGATC	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	2 cut(s)	216, 394
AgsI	TTSAA	3 cut(s)	54, 147, 380
AluBI	AGCT	3 cut(s)	102, 269, 383
AluI	AGCT	3 cut(s)	102, 269, 383
Alw21I	GWGCWC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	453
Ama87I	CYCGRG	1 cut(s)	396
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	432, 434
AvaI	CYCGRG	1 cut(s)	396
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	2 cut(s)	161, 462
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BfaI	CTAG	2 cut(s)	191, 266
BglII	AGATCT	1 cut(s)	485
BisI	GCNGC	2 cut(s)	45, 505
BlsI	GCNGC	2 cut(s)	46, 506
BmeT110I	CYCGRG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	314
BpiI	GAAGAC	2 cut(s)	161, 462
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BpmI	CTGGAG	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	66, 128
Bse3DI	GCAATG	1 cut(s)	473
BseGI	GGATG	2 cut(s)	184, 217
BseMI	GCAATG	1 cut(s)	473
BsePI	GCGCGC	1 cut(s)	430
BseXI	GCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	396
BsnI	GGCC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	94, 343, 356, 445, 485
BspACI	CCGC	3 cut(s)	330, 352, 505
BspANI	GGCC	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	432
BspPI	GGATC	1 cut(s)	453
BsrDI	GCAATG	1 cut(s)	473
BssHII	GCGCGC	1 cut(s)	430
BssMI	GATC	5 cut(s)	94, 343, 356, 445, 485
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	3 cut(s)	301, 363, 376
BstC8I	GCNNGC	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	184, 217
BstFNI	CGCG	1 cut(s)	432
BstHHI	GCGC	2 cut(s)	432, 434
BstKTI	GATC	5 cut(s)	97, 346, 359, 448, 488
BstMBI	GATC	5 cut(s)	94, 343, 356, 445, 485
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	161, 462
BstX2I	RGATCY	2 cut(s)	445, 485
BstYI	RGATCY	2 cut(s)	445, 485
BsuRI	GGCC	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	184, 217
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	432
CfoI	GCGC	2 cut(s)	432, 434
Csp6I	GTAC	2 cut(s)	215, 393
CviJI	RGCY	7 cut(s)	102, 113, 190, 269, 317, 383, 504
CviKI_1	RGCY	7 cut(s)	102, 113, 190, 269, 317, 383, 504
CviQI	GTAC	2 cut(s)	215, 393
DpnI	GATC	5 cut(s)	96, 345, 358, 447, 487
DpnII	GATC	5 cut(s)	94, 343, 356, 445, 485
Eco32I	GATATC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	396
EcoRV	GATATC	1 cut(s)	248
FaiI	YATR	2 cut(s)	12, 152
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	2 cut(s)	45, 505
FokI	GGATG	2 cut(s)	191, 224
Fsp4HI	GCNGC	2 cut(s)	45, 505
FspBI	CTAG	2 cut(s)	191, 266
GlaI	GCGC	2 cut(s)	431, 433
GluI	GCNGC	2 cut(s)	45, 505
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	432, 434
Hin6I	GCGC	2 cut(s)	430, 432
HinP1I	GCGC	2 cut(s)	430, 432
HinfI	GANTC	2 cut(s)	50, 311
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	3 cut(s)	272, 398, 489
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	3 cut(s)	301, 363, 376
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	2 cut(s)	305, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	459
HspAI	GCGC	2 cut(s)	430, 432
Kzo9I	GATC	5 cut(s)	94, 343, 356, 445, 485
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	2 cut(s)	381, 474
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	314
MaeI	CTAG	2 cut(s)	191, 266
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	5 cut(s)	96, 345, 358, 447, 487
MboI	GATC	5 cut(s)	94, 343, 356, 445, 485
MboII	GAAGA	3 cut(s)	69, 166, 467
MflI	RGATCY	2 cut(s)	445, 485
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	7 cut(s)	55, 132, 161, 240, 285, 437, 508
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	2 cut(s)	103, 436
MseI	TTAA	1 cut(s)	511
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	5 cut(s)	94, 343, 356, 445, 485
PaeR7I	CTCGAG	1 cut(s)	396
PauI	GCGCGC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	50, 311
PkrI	GCNGC	2 cut(s)	46, 506
PsiI	TTATAA	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	445, 485
PteI	GCGCGC	1 cut(s)	430
RsaI	GTAC	2 cut(s)	216, 394
RsaNI	GTAC	2 cut(s)	215, 393
SaqAI	TTAA	1 cut(s)	511
SatI	GCNGC	2 cut(s)	45, 505
Sau3AI	GATC	5 cut(s)	94, 343, 356, 445, 485
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	4 cut(s)	104, 271, 385, 462
SfaNI	GCATC	1 cut(s)	314
Sfr274I	CTCGAG	1 cut(s)	396
SlaI	CTCGAG	1 cut(s)	396
SmlI	CTYRAG	3 cut(s)	81, 107, 396
SmoI	CTYRAG	3 cut(s)	81, 107, 396
Sse9I	AATT	7 cut(s)	55, 132, 161, 240, 285, 437, 508
SsiI	CCGC	3 cut(s)	330, 352, 505
SspMI	CTAG	2 cut(s)	191, 266
TaaI	ACNGT	3 cut(s)	301, 363, 376
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	4 cut(s)	62, 140, 244, 397
TasI	AATT	7 cut(s)	55, 132, 161, 240, 285, 437, 508
TatI	WGTACW	2 cut(s)	214, 392
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	2 cut(s)	50, 311
Tru1I	TTAA	1 cut(s)	511
Tru9I	TTAA	1 cut(s)	511
TscAI	CASTG	1 cut(s)	366
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	167, 195, 251
TspRI	CASTG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	240
XhoI	CTCGAG	1 cut(s)	396
XspI	CTAG	2 cut(s)	191, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.