RchiOBHm_Chr3g0484101

breast cancer carboxy-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005466
Physical Location & Seq
Forward (+)
30467874 .. 30469704
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44881

Sequence Viewer

Length: 276 bp
ATGGCGCCAAGGAAGACCGCATCATCCTCTCCGATCCCAATAGGCAATTGCGAGGTGACAGTGGAAGCTACCGACTTCAGTTGCCGATCAGAGCCGGACTCCCTCCAAATCTCCCTCTCCACAACCTCCAAAATCACTATCTCATTGAGAAAAGAAGTGGAAAGGAATAGCATTTCAAATCTCAAGGTTGGGTTGGGGATAGGAACAGCAGGTTGGCCCTCAGAGGGGGTGGACATGATGGTAGATGGGGGAGCGGGTTTAGAACCGTCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 BRCT RTT107_BRCT_5

Protein Analysis

91

Amino Acids

9.47

Weight (kDa)

4.76

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 254
AciI CCGC 2 cut(s) 18, 254
AclWI GGATC 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 224, 225
AgsI TTSAA 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 196, 228
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
AlwI GGATC 1 cut(s) 28
AoxI GGCC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 20
BccI CCATC 2 cut(s) 232, 239
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 20
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpuEI CTTGAG 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 225
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 224, 225
BseMII CTCAG 1 cut(s) 234
BshFI GGCC 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 224, 225
BsnI GGCC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 33, 86
BspACI CCGC 2 cut(s) 18, 254
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 200
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 2 cut(s) 33, 86
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 61, 267
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 23
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 36, 89
BstMBI GATC 2 cut(s) 33, 86
BstV2I GAAGAC 1 cut(s) 20
BsuRI GGCC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 66
BveI ACCTGC 1 cut(s) 200
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 216
CviAII CATG 1 cut(s) 235
CviJI RGCY 3 cut(s) 68, 94, 217
CviKI_1 RGCY 3 cut(s) 68, 94, 217
DdeI CTNAG 1 cut(s) 220
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 35, 88
DpnII GATC 2 cut(s) 33, 86
Eco130I CCWWGG 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 1 cut(s) 238
FaiI YATR 2 cut(s) 236, 274
FatI CATG 1 cut(s) 234
FauI CCCGC 1 cut(s) 247
FokI GGATG 1 cut(s) 10
GlaI GCGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 217
HapII CCGG 1 cut(s) 95
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 1 cut(s) 98
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 232, 270
Hpy188I TCNGA 3 cut(s) 33, 91, 223
Hpy8I GTNNAC 2 cut(s) 232, 270
HpyCH4III ACNGT 2 cut(s) 61, 267
HpyF3I CTNAG 1 cut(s) 220
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 33, 86
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 2 cut(s) 108, 195
LweI GCATC 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 35, 88
MbiI CCGCTC 1 cut(s) 254
MboI GATC 2 cut(s) 33, 86
MboII GAAGA 1 cut(s) 25
MfeI CAATTG 1 cut(s) 46
MluCI AATT 1 cut(s) 46
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 7 cut(s) 37, 46, 113, 125, 136, 217, 229
MspI CCGG 1 cut(s) 95
MunI CAATTG 1 cut(s) 46
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 33, 86
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 55
PleI GAGTC 1 cut(s) 92
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 216
Sau3AI GATC 2 cut(s) 33, 86
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 92
SetI ASST 5 cut(s) 57, 70, 128, 189, 214
SfaNI GCATC 1 cut(s) 29
SfoI GGCGCC 1 cut(s) 6
SgeI CNNG 7 cut(s) 21, 64, 107, 196, 222, 247, 267
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 46
SsiI CCGC 2 cut(s) 18, 254
SspDI GGCGCC 1 cut(s) 4
StyI CCWWGG 1 cut(s) 8
TaaI ACNGT 2 cut(s) 61, 267
TasI AATT 1 cut(s) 46
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspRI CASTG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.