Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005466

Physical Location & Seq

Genomic Coordinates Forward (+)

62586121 .. 62589599

Gene Structure 3479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTATTATGGCTGAGCGCTTTATTGAAGCAGGTTATAGCTGCTATCACTTACCAAATAGTTCCCACTGACACACAGTACGCTGAGATACCTATTGCTGCTGTCAGTTCAATGTACCAACACAAGGGATTTGGTAGCTCCTTGCTCCTGGAATTGAAAAAGAGACTTCAAAGTGTTGGTATATGCACAATATTCTGTTGGGGAGACAAGGAATCTGAAGGGTTTTGGCTCAAACAGATCAGAATGACAAGGATTTGGATCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10 BRCT RTT107_BRCT_5

Protein Analysis

88

Amino Acids

10.03

Weight (kDa)

9.06

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41450 AT2G41450
fragaria_vesca	FvH4_6g24820 FvH4_6g24820 FvH4_6g24820 FvH4_6g24820 FvH4_6g24820 FvH4_6g24820
prunus_persica	Prupe.7G049600_v2.0.a1
pyrus_communis	pycom12g07350
rosa_chinensis	RchiOBHm_Chr1g0374991 RchiOBHm_Chr3g0484101 RchiOBHm_Chr3g0484111 RchiOBHm_Chr3g0484121 RchiOBHm_Chr3g0484561
rosa_laevigata	RLG00000023220
rosa_multiflora	Rmu_sc0000295.1_g000037 Rmu_sc0016014.1_g000007
rosa_roxburghii	Rroxscaffold_5G00338940 Rroxscaffold_6G00397640
rosa_rugosa	Rorug03G0211700
rosa_samantha	Rh3AG258500 Rh3AG258600 Rh3AG262400 Rh3BG297700 Rh3CG294700 Rh3DG291000 Rh5AG220100 Rh7AG088300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	2 cut(s)	80, 116
AfeI	AGCGCT	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	28, 111, 157, 170
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	41, 138
AluI	AGCT	2 cut(s)	41, 138
Alw26I	GTCTC	2 cut(s)	157, 198
AlwI	GGATC	1 cut(s)	266
Aor51HI	AGCGCT	1 cut(s)	19
ApeKI	GCWGC	2 cut(s)	41, 98
AspLEI	GCGC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	28, 85
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	157, 198
BfoI	RGCGCY	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	42, 99
BlpI	GCTNAGC	1 cut(s)	14
BlsI	GCNGC	2 cut(s)	43, 100
Bme1390I	CCNGG	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	149
BseJI	GATNNNNATC	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	5, 75
BseXI	GCAGC	2 cut(s)	28, 85
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	157, 198
Bsp143I	GATC	2 cut(s)	237, 258
Bsp1720I	GCTNAGC	1 cut(s)	14
BspCNI	CTCAG	2 cut(s)	6, 76
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	266
BssMI	GATC	2 cut(s)	237, 258
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	14, 84
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	2 cut(s)	240, 261
BstMAI	GTCTC	2 cut(s)	157, 198
BstMBI	GATC	2 cut(s)	237, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	28, 85
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	79, 115
CviJI	RGCY	4 cut(s)	13, 41, 138, 229
CviKI_1	RGCY	4 cut(s)	13, 41, 138, 229
CviQI	GTAC	2 cut(s)	79, 115
DdeI	CTNAG	2 cut(s)	14, 84
DpnI	GATC	2 cut(s)	239, 260
DpnII	GATC	2 cut(s)	237, 258
Eco47III	AGCGCT	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	147
FaiI	YATR	4 cut(s)	10, 38, 182, 184
Fnu4HI	GCNGC	2 cut(s)	42, 99
Fsp4HI	GCNGC	2 cut(s)	42, 99
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	2 cut(s)	42, 99
HaeII	RGCGCY	1 cut(s)	21
HhaI	GCGC	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	212
Hpy188I	TCNGA	3 cut(s)	217, 242, 263
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	14, 84
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	237, 258
LmnI	GCTCC	2 cut(s)	143, 150
LpnPI	CCDG	3 cut(s)	17, 134, 161
Lsp1109I	GCAGC	2 cut(s)	28, 85
MalI	GATC	2 cut(s)	239, 260
MboI	GATC	2 cut(s)	237, 258
MluCI	AATT	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	237, 258
PfeI	GAWTC	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	43, 100
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
RsaI	GTAC	2 cut(s)	80, 116
RsaNI	GTAC	2 cut(s)	79, 115
SatI	GCNGC	2 cut(s)	42, 99
Sau3AI	GATC	2 cut(s)	237, 258
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	4 cut(s)	36, 43, 94, 140
SgeI	CNNG	7 cut(s)	44, 136, 154, 160, 161, 220, 261
Sse9I	AATT	1 cut(s)	152
SspI	AATATT	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	78
TasI	AATT	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	212
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	41, 98
TspRI	CASTG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.