Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011030

Physical Location & Seq

Genomic Coordinates Forward (+)

64596897 .. 64599885

Gene Structure 2989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGATGGCCATGGCCTCAACTACAGCTTCTGCTGCTACATTTCTGTGTTCACCCAGAAGCACAAAGTCATCCATATACAACCCATCTTCTTCTTCACTGATCTCACACCCCAAAAACCAAAGATTACATCTTTCTGCTGTGTTTCCGCAACTGGGTCTCAGCCCTTTCTCGCCATGGAGTGGCTTGAAGCATTTGGGTGTCTCATTGAGACCCAAATCTTCAAAGTTAGGGAGGAAGGGAAGGTGCAAGGGGGTGGTGGTTTATGCTTCTCTGTTTGGGGTTGGAGCTCCTGAGGCTCTGGTTATTGGGGTTGTGGCTTTGTTGGTGTTTGGTCCCAAAGGTCTTGCTGAGGTTGCTCGAAATTTAGGAAAGACGTTGCGTGCTTTTCAACCAACCATTAGAGAGCTTCAGGAAGTTTCTAGGGATTTCAAGAGCACCCTTGAAAAGGAGATTGGTCTCGATGACATTTCAAGTTCAACGATAAACACATACAATTCCAACAAAACCGGCACCACTTCAGTCTCTCCATCAACTACCAGTACTGGAGATTCCAAAACCAAGACTGACCCCAATGGGGCGCCCTCTCCAAATAGAGCATCCACCACAGAGGAGAGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009941 GO:0009977 GO:0010119 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0017038 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0031323 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098796 GO:0098797 GO:1902456 GO:1902458 GO:1903426 GO:1904680 GO:2000070 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

206

Amino Acids

21.7

Weight (kDa)

9.96

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	92 - 137	2e-15	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52440
fragaria_vesca	FvH4_7g29980 FvH4_7g29980 FvH4_7g29980
malus_domestica	MD07G1276100.v1.1
prunus_persica	Prupe.2G298400_v2.0.a1 Prupe.2G298400_v2.0.a1
pyrus_communis	pycom01g21530 pycom07g25130
rosa_chinensis	RchiOBHm_Chr1g0377931
rosa_laevigata	RLG00000026485
rosa_multiflora	Rmu_sc0002068.1_g000011 Rmu_sc0028245.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280930
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG425900 Rh1BG383200 Rh1CG397000 Rh1DG414200
rosa_wichuraiana	Rw1G037250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	509, 577
AccB7I	CCANNNNNTGG	1 cut(s)	179
AciI	CCGC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	2 cut(s)	392, 501
AcyI	GRCGYC	1 cut(s)	578
AfaI	GTAC	2 cut(s)	541, 616
AfiI	CCNNNNNNNGG	4 cut(s)	152, 179, 445, 574
AgsI	TTSAA	7 cut(s)	187, 222, 389, 430, 443, 471, 477
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	3 cut(s)	26, 287, 406
AluI	AGCT	3 cut(s)	26, 287, 406
Alw21I	GWGCWC	2 cut(s)	289, 437
Alw26I	GTCTC	5 cut(s)	161, 202, 205, 461, 526
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	2 cut(s)	6, 12
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	332
AxyI	CCTNAGG	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	2 cut(s)	509, 577
BanII	GRGCYC	1 cut(s)	289
Bbv12I	GWGCWC	2 cut(s)	289, 437
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	91, 535
BcoDI	GTCTC	5 cut(s)	161, 202, 205, 461, 526
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	581
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmcAI	AGTACT	2 cut(s)	541, 616
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	3 cut(s)	334, 511, 579
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	605
BmuI	ACTGGG	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	578
BsaI	GGTCTC	3 cut(s)	161, 202, 461
BsaJI	CCNNGG	2 cut(s)	9, 173
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 179, 445, 574
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	3 cut(s)	156, 537, 547
Bse21I	CCTNAGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	9, 173
BseGI	GGATG	2 cut(s)	68, 596
BseLI	CCNNNNNNNGG	4 cut(s)	152, 179, 445, 574
BseMII	CTCAG	3 cut(s)	172, 282, 339
BseNI	ACTGG	3 cut(s)	156, 537, 547
BseXI	GCAGC	1 cut(s)	19
BshFI	GGCC	2 cut(s)	8, 14
BshNI	GGYRCC	2 cut(s)	509, 577
BsiHKAI	GWGCWC	2 cut(s)	289, 437
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	4 cut(s)	152, 179, 445, 574
BsmAI	GTCTC	5 cut(s)	161, 202, 205, 461, 526
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	8, 14
Bso31I	GGTCTC	3 cut(s)	161, 202, 461
Bsp1286I	GDGCHC	2 cut(s)	289, 437
Bsp143I	GATC	1 cut(s)	99
Bsp19I	CCATGG	2 cut(s)	9, 173
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	2 cut(s)	8, 14
BspCNI	CTCAG	3 cut(s)	171, 283, 340
BspLI	GGNNCC	3 cut(s)	334, 511, 579
BspT107I	GGYRCC	2 cut(s)	509, 577
BspTNI	GGTCTC	3 cut(s)	161, 202, 461
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	3 cut(s)	156, 537, 547
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	2 cut(s)	9, 173
BssMI	GATC	1 cut(s)	99
BssNI	GRCGYC	1 cut(s)	578
BssT1I	CCWWGG	2 cut(s)	9, 173
BstACI	GRCGYC	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	3 cut(s)	158, 291, 348
BstDSI	CCRYGG	2 cut(s)	9, 173
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	68, 596
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	5 cut(s)	161, 202, 205, 461, 526
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 293, 353
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	19
Bsu36I	CCTNAGG	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	8, 14
BtgI	CCRYGG	2 cut(s)	9, 173
BtsCI	GGATG	2 cut(s)	68, 596
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	1 cut(s)	29
CfoI	GCGC	1 cut(s)	580
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	540, 615
CviAII	CATG	2 cut(s)	10, 174
CviJI	RGCY	9 cut(s)	8, 14, 26, 162, 183, 287, 296, 317, 406
CviKI_1	RGCY	9 cut(s)	8, 14, 26, 162, 183, 287, 296, 317, 406
CviQI	GTAC	2 cut(s)	540, 615
DdeI	CTNAG	3 cut(s)	158, 291, 348
DinI	GGCGCC	1 cut(s)	579
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	9, 173
Eco24I	GRGCYC	1 cut(s)	289
Eco31I	GGTCTC	3 cut(s)	161, 202, 461
Eco47I	GGWCC	1 cut(s)	332
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	392, 501
Eco81I	CCTNAGG	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoT14I	CCWWGG	2 cut(s)	9, 173
EcoT38I	GRGCYC	1 cut(s)	289
EgeI	GGCGCC	1 cut(s)	579
EheI	GGCGCC	1 cut(s)	579
ErhI	CCWWGG	2 cut(s)	9, 173
FaeI	CATG	2 cut(s)	13, 177
FaiI	YATR	6 cut(s)	11, 74, 76, 175, 264, 490
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	9, 173
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	55, 583
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	2 cut(s)	8, 14
HapII	CCGG	1 cut(s)	507
HhaI	GCGC	1 cut(s)	580
Hin1I	GRCGYC	1 cut(s)	578
Hin1II	CATG	2 cut(s)	13, 177
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HinfI	GANTC	1 cut(s)	548
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188III	TCNNGA	4 cut(s)	290, 410, 430, 458
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	229, 234
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 293, 353
HpyF3I	CTNAG	3 cut(s)	158, 291, 348
HpySE526I	ACGT	1 cut(s)	374
Hsp92I	GRCGYC	1 cut(s)	578
Hsp92II	CATG	2 cut(s)	13, 177
HspAI	GCGC	1 cut(s)	578
KasI	GGCGCC	1 cut(s)	577
Kzo9I	GATC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	284, 292
LpnPI	CCDG	8 cut(s)	67, 137, 284, 303, 395, 520, 528, 550
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	605
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	374
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	4 cut(s)	78, 81, 84, 210
MhlI	GDGCHC	2 cut(s)	289, 437
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	2 cut(s)	361, 493
MluNI	TGGCCA	1 cut(s)	8
Mly113I	GGCGCC	1 cut(s)	578
MmeI	TCCRAC	2 cut(s)	262, 522
MnlI	CCTC	6 cut(s)	25, 225, 286, 343, 592, 601
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	1 cut(s)	619
MslI	CAYNNNNRTG	2 cut(s)	43, 195
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	32, 293, 353
NarI	GGCGCC	1 cut(s)	578
NcoI	CCATGG	2 cut(s)	9, 173
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	2 cut(s)	13, 177
NlaIV	GGNNCC	3 cut(s)	334, 511, 579
PfeI	GAWTC	1 cut(s)	548
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	34
PluTI	GGCGCC	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	334, 511, 579
PspPI	GGNCC	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	541, 616
RsaNI	GTAC	2 cut(s)	540, 615
RseI	CAYNNNNRTG	2 cut(s)	43, 195
SacI	GAGCTC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	619
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	332
ScaI	AGTACT	2 cut(s)	541, 616
SduI	GDGCHC	2 cut(s)	289, 437
SetI	ASST	7 cut(s)	28, 245, 289, 343, 354, 377, 408
SfaNI	GCATC	1 cut(s)	605
SfcI	CTRYAG	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	579
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	2 cut(s)	43, 195
Sse9I	AATT	2 cut(s)	361, 493
SsiI	CCGC	1 cut(s)	146
SspDI	GGCGCC	1 cut(s)	577
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	9, 173
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	358, 459
TasI	AATT	2 cut(s)	361, 493
TatI	WGTACW	2 cut(s)	539, 614
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	1 cut(s)	619
Tru9I	TTAA	1 cut(s)	619
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	1 cut(s)	32
TspRI	CASTG	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	361
XspI	CTAG	1 cut(s)	420
ZrmI	AGTACT	2 cut(s)	541, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.