RchiOBHm_Chr1g0377951

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006589
Physical Location & Seq
Reverse (-)
64611841 .. 64613340
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1101 bp
ATGACGCAAAAGCTTAGTGCACGCATCCGAAAGTTTATTTCTTGTACTGCATCATCAAGACCCCTTGGCACACCAAATTCTTCAATGGGAGTGGATGTAACAGAAGAATACGCTAATGCCTTCCGCACCGAATCCTACCTCGACTTTTGGACACGTGTCGTCACGCTATCCAATGCTGATTCCACCGGCTCCAAGCTTATTCAAATGGAGTCGAGAACTGCGGCTCGGCTCCCATCCTATCGGCTCTTCGTGGAGCATCTTTTGGATCCGGATCAAACCATGATTACTCGGATCTTGGCACTGACCCGAAACCACCCAAAGAACCATGCACTTCTATCCGACTATTTTACCCAAACCGCAGATGCTTCCGCCCTGTGTGGTCTCCTACTAAAAGATATCGACCGTACACGTGTTAAATACCGTACCATCAGAACTACACTTCAGTCTCTAAATAAATGTCTAGCTCCTACGACACTAAACCAACTAACCAAATTCTCTATTGTTTTATCTCCCAAACGAATTCAAAGTATTCAAGTTAGATGCTCTGATTTGTTGAAACGGCTTGAGTTAACTCGCAATAAGACTCGAGCTAAGCTAAGTCTCACAGGCAAATTCCAAACCGGATCGGCTATCATCTTGGTGGCAATAACGACTACACTAAGTGTAATTGTTGTCACGCATGCACTTGCACTAGTTGTAGCTGCACCAACTCTTATAGCAACCTCACTCGACCTGGCTTCGTCGAGGAGACTAGCTAGGATGGCGGCTCAGCTCGATGCGGCTACCAAGGGAGCTTACATAGTAAACAGGGATTTGGAGACGGTGAGCCGGCTCGTGGCTCGGCTAAACGATGAGCTTGAGCACATGCGCGGAATGGTTCAGTTTTGGGTGGAGCGCGGCGAGGAGGACTGGCTCCAAGCCGGCGGCGAAGTAGCACGCCAGCTGAAGAAAAATGATTGTAGCTTTAGACAGCAGCTAGATGAGCTGGAGGAGCATTTGTATCTGTGTTTCATGACTATAAACCGGGCTAGAAATCTTGTAGTGAAGGAGATTCTAGATCCCGGTCAGACCACCAATTCACATACCACATTAGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

366

Amino Acids

41.06

Weight (kDa)

9.62

Isoelectric Point (pI)

29.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 75 - 351 5.6e-13 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 870, 897
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 9 cut(s) 124, 221, 357, 369, 764, 779, 870, 897, 924
AclWI GGATC 6 cut(s) 260, 273, 279, 299, 631, 1052
AcsI RAATTY 4 cut(s) 76, 491, 519, 611
AcuI CTGAAG 2 cut(s) 425, 965
AcvI CACGTG 2 cut(s) 155, 410
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 3 cut(s) 46, 406, 424
AfiI CCNNNNNNNGG 1 cut(s) 835
AflIII ACRYGT 4 cut(s) 152, 154, 407, 409
AgsI TTSAA 5 cut(s) 84, 203, 524, 533, 556
AhlI ACTAGT 1 cut(s) 691
AjnI CCWGG 1 cut(s) 732
Alw21I GWGCWC 2 cut(s) 22, 864
Alw26I GTCTC 5 cut(s) 386, 450, 605, 742, 812
Alw44I GTGCAC 1 cut(s) 18
AlwI GGATC 6 cut(s) 260, 273, 279, 299, 631, 1052
Ama87I CYCGRG 1 cut(s) 585
Aor13HI TCCGGA 1 cut(s) 268
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 701, 973
ApoI RAATTY 4 cut(s) 76, 491, 519, 611
AspLEI GCGC 2 cut(s) 870, 897
AsuC2I CCSGG 2 cut(s) 1025, 1062
AsuHPI GGTGA 1 cut(s) 835
AvaI CYCGRG 1 cut(s) 585
BaeGI GKGCMC 1 cut(s) 22
BamHI GGATCC 1 cut(s) 265
BauI CACGAG 1 cut(s) 833
BbrPI CACGTG 2 cut(s) 155, 410
Bbv12I GWGCWC 2 cut(s) 22, 864
BbvI GCAGC 2 cut(s) 688, 985
BccI CCATC 3 cut(s) 241, 434, 754
BceAI ACGGC 1 cut(s) 575
BciT130I CCWGG 1 cut(s) 734
BcnI CCSGG 2 cut(s) 1025, 1062
BcoDI GTCTC 5 cut(s) 386, 450, 605, 742, 812
BcuI ACTAGT 1 cut(s) 691
BfaI CTAG 7 cut(s) 461, 692, 752, 756, 977, 1029, 1055
BisI GCNGC 7 cut(s) 222, 702, 765, 780, 898, 925, 974
BlpI GCTNAGC 2 cut(s) 591, 768
BlsI GCNGC 7 cut(s) 223, 703, 766, 781, 899, 926, 975
Bme1390I CCNGG 3 cut(s) 734, 1025, 1062
BmeT110I CYCGRG 1 cut(s) 585
BmiI GGNNCC 4 cut(s) 190, 230, 267, 914
BmrFI CCNGG 3 cut(s) 734, 1025, 1062
BmsI GCATC 6 cut(s) 33, 59, 265, 352, 530, 766
BoxI GACNNNNGTC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 1007
Bpu1102I GCTNAGC 2 cut(s) 591, 768
BpuEI CTTGAG 2 cut(s) 584, 878
BpuMI CCSGG 2 cut(s) 1025, 1062
BsaAI YACGTR 2 cut(s) 155, 410
BsaBI GATNNNNATC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 64, 786
BsaWI WCCGGW 2 cut(s) 268, 620
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 983, 1013
Bsc4I CCNNNNNNNGG 1 cut(s) 835
Bse118I RCCGGY 3 cut(s) 185, 828, 920
Bse1I ACTGG 1 cut(s) 914
Bse3DI GCAATG 1 cut(s) 1101
Bse8I GATNNNNATC 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 268
BseBI CCWGG 1 cut(s) 734
BseDI CCNNGG 2 cut(s) 64, 786
BseGI GGATG 4 cut(s) 24, 100, 233, 765
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 835
BseMI GCAATG 1 cut(s) 1101
BseMII CTCAG 1 cut(s) 782
BseNI ACTGG 1 cut(s) 914
BseRI GAGGAG 3 cut(s) 760, 917, 1004
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 2 cut(s) 688, 985
BsgI GTGCAG 1 cut(s) 687
Bsh1236I CGCG 2 cut(s) 870, 897
Bsh1285I CGRYCG 1 cut(s) 403
BsiEI CGRYCG 1 cut(s) 403
BsiHKAI GWGCWC 2 cut(s) 22, 864
BsiHKCI CYCGRG 1 cut(s) 585
BsiSI CCGG 7 cut(s) 186, 269, 621, 829, 921, 1024, 1062
BslI CCNNNNNNNGG 1 cut(s) 835
BsmAI GTCTC 5 cut(s) 386, 450, 605, 742, 812
BsmBI CGTCTC 1 cut(s) 812
Bso31I GGTCTC 1 cut(s) 386
BsoBI CYCGRG 1 cut(s) 585
Bsp1286I GDGCHC 2 cut(s) 22, 864
Bsp13I TCCGGA 1 cut(s) 268
Bsp143I GATC 5 cut(s) 265, 271, 291, 623, 1057
Bsp1720I GCTNAGC 2 cut(s) 591, 768
BspACI CCGC 9 cut(s) 124, 221, 357, 369, 764, 779, 870, 897, 924
BspCNI CTCAG 1 cut(s) 781
BspEI TCCGGA 1 cut(s) 268
BspFNI CGCG 2 cut(s) 870, 897
BspHI TCATGA 1 cut(s) 1011
BspLI GGNNCC 4 cut(s) 190, 230, 267, 914
BspPI GGATC 6 cut(s) 260, 273, 279, 299, 631, 1052
BspQI GCTCTTC 1 cut(s) 251
BspTNI GGTCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 1101
BsrFI RCCGGY 3 cut(s) 185, 828, 920
BsrI ACTGG 1 cut(s) 914
BssAI RCCGGY 3 cut(s) 185, 828, 920
BssECI CCNNGG 2 cut(s) 64, 786
BssMI GATC 5 cut(s) 265, 271, 291, 623, 1057
BssSI CACGAG 1 cut(s) 833
BssT1I CCWWGG 2 cut(s) 64, 786
Bst2BI CACGAG 1 cut(s) 833
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 3 cut(s) 404, 422, 823
Bst6I CTCTTC 1 cut(s) 251
BstBAI YACGTR 2 cut(s) 155, 410
BstC8I GCNNGC 6 cut(s) 22, 681, 830, 922, 937, 941
BstDEI CTNAG 5 cut(s) 14, 591, 596, 659, 768
BstF5I GGATG 4 cut(s) 24, 100, 233, 765
BstFNI CGCG 2 cut(s) 870, 897
BstHHI GCGC 2 cut(s) 870, 897
BstKTI GATC 5 cut(s) 268, 274, 294, 626, 1060
BstMAI GTCTC 5 cut(s) 386, 450, 605, 742, 812
BstMBI GATC 5 cut(s) 265, 271, 291, 623, 1057
BstMCI CGRYCG 1 cut(s) 403
BstMWI GCNNNNNNNGC 3 cut(s) 761, 982, 991
BstNI CCWGG 1 cut(s) 734
BstNSI RCATGY 2 cut(s) 683, 868
BstPAI GACNNNNGTC 1 cut(s) 155
BstSCI CCNGG 3 cut(s) 732, 1023, 1060
BstSLI GKGCMC 1 cut(s) 22
BstUI CGCG 2 cut(s) 870, 897
BstV1I GCAGC 2 cut(s) 688, 985
BstX2I RGATCY 3 cut(s) 265, 291, 1057
BstYI RGATCY 3 cut(s) 265, 291, 1057
BtsCI GGATG 4 cut(s) 24, 100, 233, 765
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 6 cut(s) 22, 681, 830, 922, 937, 941
CciI TCATGA 1 cut(s) 1011
CfoI GCGC 2 cut(s) 870, 897
Cfr10I RCCGGY 3 cut(s) 185, 828, 920
CseI GACGC 1 cut(s) 13
Csp6I GTAC 3 cut(s) 45, 405, 423
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 5 cut(s) 280, 326, 680, 865, 1012
CviQI GTAC 3 cut(s) 45, 405, 423
DdeI CTNAG 5 cut(s) 14, 591, 596, 659, 768
DpnI GATC 5 cut(s) 267, 273, 293, 625, 1059
DpnII GATC 5 cut(s) 265, 271, 291, 623, 1057
DraIII CACNNNGTG 1 cut(s) 662
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 1 cut(s) 358
Eco130I CCWWGG 2 cut(s) 64, 786
Eco31I GGTCTC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 397
Eco57I CTGAAG 2 cut(s) 425, 965
Eco72I CACGTG 2 cut(s) 155, 410
Eco88I CYCGRG 1 cut(s) 585
EcoRI GAATTC 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 732
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 64, 786
ErhI CCWWGG 2 cut(s) 64, 786
Esp3I CGTCTC 1 cut(s) 812
FaeI CATG 5 cut(s) 283, 329, 683, 868, 1015
FaiI YATR 9 cut(s) 281, 327, 681, 716, 800, 866, 1013, 1019, 1083
FatI CATG 5 cut(s) 279, 325, 679, 864, 1011
Fnu4HI GCNGC 7 cut(s) 222, 702, 765, 780, 898, 925, 974
FokI GGATG 4 cut(s) 11, 107, 220, 772
Fsp4HI GCNGC 7 cut(s) 222, 702, 765, 780, 898, 925, 974
FspBI CTAG 7 cut(s) 461, 692, 752, 756, 977, 1029, 1055
GlaI GCGC 2 cut(s) 869, 896
GluI GCNGC 7 cut(s) 222, 702, 765, 780, 898, 925, 974
GsuI CTGGAG 1 cut(s) 1007
HapII CCGG 7 cut(s) 186, 269, 621, 829, 921, 1024, 1062
HgaI GACGC 1 cut(s) 13
HhaI GCGC 2 cut(s) 870, 897
Hin1II CATG 5 cut(s) 283, 329, 683, 868, 1015
Hin6I GCGC 2 cut(s) 868, 895
HinP1I GCGC 2 cut(s) 868, 895
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HindIII AAGCTT 2 cut(s) 11, 194
HinfI GANTC 5 cut(s) 131, 179, 209, 583, 1051
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 7 cut(s) 186, 269, 621, 829, 921, 1024, 1062
HphI GGTGA 1 cut(s) 835
Hpy166II GTNNAC 4 cut(s) 20, 407, 570, 805
Hpy188I TCNGA 6 cut(s) 29, 291, 340, 431, 547, 1068
Hpy188III TCNNGA 5 cut(s) 57, 213, 269, 1012, 1055
Hpy8I GTNNAC 4 cut(s) 20, 407, 570, 805
Hpy99I CGWCG 1 cut(s) 745
HpyAV CCTTC 2 cut(s) 130, 1039
HpyCH4III ACNGT 3 cut(s) 404, 422, 823
HpyCH4IV ACGT 2 cut(s) 154, 409
HpyCH4V TGCA 6 cut(s) 20, 50, 329, 683, 689, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 761, 982, 991
HpyF3I CTNAG 5 cut(s) 14, 591, 596, 659, 768
HpySE526I ACGT 2 cut(s) 154, 409
Hsp92II CATG 5 cut(s) 283, 329, 683, 868, 1015
HspAI GCGC 2 cut(s) 868, 895
Kpn2I TCCGGA 1 cut(s) 268
KroI GCCGGC 2 cut(s) 828, 920
KroNI GCCGGC 2 cut(s) 830, 922
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 5 cut(s) 265, 271, 291, 623, 1057
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 8 cut(s) 194, 234, 253, 469, 791, 892, 918, 991
Lsp1109I GCAGC 2 cut(s) 688, 985
LweI GCATC 6 cut(s) 33, 59, 265, 352, 530, 766
MaeI CTAG 7 cut(s) 461, 692, 752, 756, 977, 1029, 1055
MaeII ACGT 2 cut(s) 154, 409
MaeIII GTNAC 3 cut(s) 97, 160, 673
MalI GATC 5 cut(s) 267, 273, 293, 625, 1059
MboI GATC 5 cut(s) 265, 271, 291, 623, 1057
MboII GAAGA 4 cut(s) 72, 116, 238, 958
MflI RGATCY 3 cut(s) 265, 291, 1057
MhlI GDGCHC 2 cut(s) 22, 864
MluCI AATT 6 cut(s) 76, 491, 519, 611, 666, 1075
MlyI GAGTC 2 cut(s) 218, 577
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 6 cut(s) 149, 733, 738, 895, 898, 982
MroI TCCGGA 1 cut(s) 268
MroNI GCCGGC 2 cut(s) 828, 920
MseI TTAA 2 cut(s) 414, 569
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 1 cut(s) 943
MspI CCGG 7 cut(s) 186, 269, 621, 829, 921, 1024, 1062
MspR9I CCNGG 3 cut(s) 734, 1025, 1062
MvaI CCWGG 1 cut(s) 734
MvnI CGCG 2 cut(s) 870, 897
MwoI GCNNNNNNNGC 3 cut(s) 761, 982, 991
NaeI GCCGGC 2 cut(s) 830, 922
NciI CCSGG 2 cut(s) 1025, 1062
NdeII GATC 5 cut(s) 265, 271, 291, 623, 1057
NgoMIV GCCGGC 2 cut(s) 828, 920
NlaIII CATG 5 cut(s) 283, 329, 683, 868, 1015
NlaIV GGNNCC 4 cut(s) 190, 230, 267, 914
NmeAIII GCCGAG 2 cut(s) 205, 820
NmuCI GTSAC 2 cut(s) 160, 673
NspI RCATGY 2 cut(s) 683, 868
PaeI GCATGC 1 cut(s) 683
PaeR7I CTCGAG 1 cut(s) 585
PagI TCATGA 1 cut(s) 1011
PciSI GCTCTTC 1 cut(s) 251
PdiI GCCGGC 2 cut(s) 830, 922
PfeI GAWTC 3 cut(s) 131, 179, 1051
PkrI GCNGC 7 cut(s) 223, 703, 766, 781, 899, 926, 975
PleI GAGTC 2 cut(s) 217, 577
PmaCI CACGTG 2 cut(s) 155, 410
PmlI CACGTG 2 cut(s) 155, 410
PpsI GAGTC 2 cut(s) 217, 577
Ppu21I YACGTR 2 cut(s) 155, 410
PshAI GACNNNNGTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 732
PspCI CACGTG 2 cut(s) 155, 410
PspGI CCWGG 1 cut(s) 732
PspN4I GGNNCC 4 cut(s) 190, 230, 267, 914
PspXI VCTCGAGB 1 cut(s) 585
PsuI RGATCY 3 cut(s) 265, 291, 1057
PvuII CAGCTG 1 cut(s) 943
RsaI GTAC 3 cut(s) 46, 406, 424
RsaNI GTAC 3 cut(s) 45, 405, 423
RseI CAYNNNNRTG 1 cut(s) 638
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 2 cut(s) 414, 569
SatI GCNGC 7 cut(s) 222, 702, 765, 780, 898, 925, 974
Sau3AI GATC 5 cut(s) 265, 271, 291, 623, 1057
SchI GAGTC 2 cut(s) 218, 577
ScrFI CCNGG 3 cut(s) 734, 1025, 1062
SduI GDGCHC 2 cut(s) 22, 864
SfaNI GCATC 6 cut(s) 33, 59, 265, 352, 530, 766
Sfr274I CTCGAG 1 cut(s) 585
SlaI CTCGAG 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 3 cut(s) 563, 585, 857
SmoI CTYRAG 3 cut(s) 563, 585, 857
SpeI ACTAGT 1 cut(s) 691
SphI GCATGC 1 cut(s) 683
Sse9I AATT 6 cut(s) 76, 491, 519, 611, 666, 1075
SsiI CCGC 9 cut(s) 124, 221, 357, 369, 764, 779, 870, 897, 924
SspMI CTAG 7 cut(s) 461, 692, 752, 756, 977, 1029, 1055
StyD4I CCNGG 3 cut(s) 732, 1023, 1060
StyI CCWWGG 2 cut(s) 64, 786
TaaI ACNGT 3 cut(s) 404, 422, 823
TaiI ACGT 2 cut(s) 157, 412
TaqI TCGA 7 cut(s) 141, 212, 399, 586, 729, 743, 774
TasI AATT 6 cut(s) 76, 491, 519, 611, 666, 1075
TatI WGTACW 1 cut(s) 44
TauI GCSGC 5 cut(s) 224, 767, 782, 900, 927
TfiI GAWTC 3 cut(s) 131, 179, 1051
Tru1I TTAA 2 cut(s) 414, 569
Tru9I TTAA 2 cut(s) 414, 569
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 2 cut(s) 160, 673
TseI GCWGC 2 cut(s) 701, 973
Tsp45I GTSAC 2 cut(s) 160, 673
TspDTI ATGAA 1 cut(s) 1000
TspRI CASTG 1 cut(s) 306
VneI GTGCAC 1 cut(s) 18
XapI RAATTY 4 cut(s) 76, 491, 519, 611
XbaI TCTAGA 1 cut(s) 1054
XceI RCATGY 2 cut(s) 683, 868
XhoI CTCGAG 1 cut(s) 585
XspI CTAG 7 cut(s) 461, 692, 752, 756, 977, 1029, 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.