Rw1G037270

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006589
Physical Location & Seq
Reverse (-)
64953103 .. 64954408
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037270.1

Sequence Viewer

Length: 1149 bp
ATGACTTTTATTCTCCTATATAACCTCATTTGTTATTCCTCAACGTGGTTTTTTTTTATAATATTTAGCTTCACAATTTCACAAGACGAAATGACGCAAAAGCTTAGTGCACGCATCCGAAAGTTTATTTCTTGTACTGCATCATCAAGACCCATTGGCACACCAAATTGTTCAATGGGAGTGGATGTAACAGAAGAATACGCTAATGCCTTCCGCACCGAATCCTACCTCGACTTTTGGACACGTGTCGTCACGCTATCCAATGCTGATTCCACCGGCTCCAAGCTTATTCAAATGGAGTCGAGAACTGCGGCTCGGCTCCCATCCTATCGGCTCTTCGTGGAGCATCTTTTGGATCCGGATCAAACCATGATTACTCGGATCTTGGCACTGACCCGAAACCACCCAAAGAACCATGCACTTCTATCCGACTATTTTACCCAAACCGCAGATGCTTCCGCCCTGTGTGGTCTCCTACTAAAAGATATCGACCGTACACGTGTTAAATACCGTTCCATCAGAACTACACTTCAGTCTCTAAATAAATGTCTAGCTCCTACGACACTAAACCAACTAACCAAATTCTCTATTGTTTTATCTCCCAAACGAATTCAAAGTATTCAAGTTAGATGCTCTGATTTGTTGAAACGGCTCGAGCAAATTCCAAACCGGATCGGCTATCATCTTGGTGGCGTAACGACTACACTAAGTGTAATTGTTGTCACGCATGCACTTGCACTGGTTGTAGCTGCACCAACTCTTATAGCAACCTCACTCGACCTGGCTTCGTCGAGGAGACTAGCTAGGATGGCGGCTCAGCTCGATGCGGCTACCAAGGGAGCTTACATAGTAAACAGGGATTTGGAGACGGTGAGCCGGCTCGTGGCTCGGCTAAACGATGAGCTTGAGCACATGCGCGGAATGGTTCAGTTTTGGGTGGAGCGCGGCGAGGAGGACTGGCTCCAAGCCGGCGGCGAAGTGGCACGCCAGCTGAAGAAAAATGATTGTAGCTTTAGACAGCAGCTAGATGAGCTGGAGGAGCATTTGTATCTGTGTTTCATGACTATAAACCGGGCTAGAAATCTTGTAGTGAAGGAGATTCTAGATCCCGGTCAGACCACCAATTCACATACCACATTAGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

382

Amino Acids

43.26

Weight (kDa)

8.98

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 262 - 367 5.3e-07 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AccII CGCG 2 cut(s) 918, 945
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 9 cut(s) 214, 311, 447, 459, 812, 827, 918, 945, 972
AclWI GGATC 6 cut(s) 350, 363, 369, 389, 680, 1100
AcsI RAATTY 3 cut(s) 581, 609, 660
AcuI CTGAAG 2 cut(s) 515, 1013
AcvI CACGTG 2 cut(s) 245, 500
AdeI CACNNNGTG 1 cut(s) 710
AfaI GTAC 2 cut(s) 136, 496
AfiI CCNNNNNNNGG 2 cut(s) 45, 883
AflIII ACRYGT 4 cut(s) 242, 244, 497, 499
AgsI TTSAA 5 cut(s) 174, 293, 614, 623, 646
AjnI CCWGG 1 cut(s) 780
Alw21I GWGCWC 2 cut(s) 112, 912
Alw26I GTCTC 4 cut(s) 476, 540, 790, 860
Alw44I GTGCAC 1 cut(s) 108
AlwI GGATC 6 cut(s) 350, 363, 369, 389, 680, 1100
Ama87I CYCGRG 1 cut(s) 653
Aor13HI TCCGGA 1 cut(s) 358
ApaLI GTGCAC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 749, 1021
ApoI RAATTY 3 cut(s) 581, 609, 660
AspLEI GCGC 2 cut(s) 918, 945
AsuC2I CCSGG 2 cut(s) 1073, 1110
AsuHPI GGTGA 1 cut(s) 883
AvaI CYCGRG 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 112
BamHI GGATCC 1 cut(s) 355
BauI CACGAG 1 cut(s) 881
BbrPI CACGTG 2 cut(s) 245, 500
Bbv12I GWGCWC 2 cut(s) 112, 912
BbvI GCAGC 2 cut(s) 736, 1033
BccI CCATC 3 cut(s) 331, 524, 802
BceAI ACGGC 1 cut(s) 665
BciT130I CCWGG 1 cut(s) 782
BcnI CCSGG 2 cut(s) 1073, 1110
BcoDI GTCTC 4 cut(s) 476, 540, 790, 860
BfaI CTAG 6 cut(s) 551, 800, 804, 1025, 1077, 1103
BisI GCNGC 7 cut(s) 312, 750, 813, 828, 946, 973, 1022
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 7 cut(s) 313, 751, 814, 829, 947, 974, 1023
Bme1390I CCNGG 3 cut(s) 782, 1073, 1110
BmeT110I CYCGRG 1 cut(s) 653
BmiI GGNNCC 4 cut(s) 280, 320, 357, 962
BmrFI CCNGG 3 cut(s) 782, 1073, 1110
BmsI GCATC 6 cut(s) 123, 149, 355, 442, 620, 814
BoxI GACNNNNGTC 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 1055
Bpu1102I GCTNAGC 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 926
BpuMI CCSGG 2 cut(s) 1073, 1110
BsaAI YACGTR 2 cut(s) 245, 500
BsaBI GATNNNNATC 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 834
BsaWI WCCGGW 2 cut(s) 358, 669
BsaXI ACNNNNNCTCC 4 cut(s) 171, 201, 1031, 1061
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 883
Bse118I RCCGGY 3 cut(s) 275, 876, 968
Bse1I ACTGG 2 cut(s) 744, 962
Bse3DI GCAATG 1 cut(s) 1149
Bse8I GATNNNNATC 1 cut(s) 360
BseAI TCCGGA 1 cut(s) 358
BseBI CCWGG 1 cut(s) 782
BseDI CCNNGG 1 cut(s) 834
BseGI GGATG 4 cut(s) 114, 190, 323, 813
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 45, 883
BseMI GCAATG 1 cut(s) 1149
BseMII CTCAG 1 cut(s) 830
BseNI ACTGG 2 cut(s) 744, 962
BseRI GAGGAG 3 cut(s) 808, 965, 1052
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 2 cut(s) 736, 1033
BsgI GTGCAG 1 cut(s) 735
Bsh1236I CGCG 2 cut(s) 918, 945
Bsh1285I CGRYCG 1 cut(s) 493
BsiEI CGRYCG 1 cut(s) 493
BsiHKAI GWGCWC 2 cut(s) 112, 912
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 7 cut(s) 276, 359, 670, 877, 969, 1072, 1110
BslI CCNNNNNNNGG 2 cut(s) 45, 883
BsmAI GTCTC 4 cut(s) 476, 540, 790, 860
BsmBI CGTCTC 1 cut(s) 860
Bso31I GGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 112, 912
Bsp13I TCCGGA 1 cut(s) 358
Bsp143I GATC 5 cut(s) 355, 361, 381, 672, 1105
Bsp1720I GCTNAGC 1 cut(s) 816
BspACI CCGC 9 cut(s) 214, 311, 447, 459, 812, 827, 918, 945, 972
BspCNI CTCAG 1 cut(s) 829
BspEI TCCGGA 1 cut(s) 358
BspFNI CGCG 2 cut(s) 918, 945
BspHI TCATGA 1 cut(s) 1059
BspLI GGNNCC 4 cut(s) 280, 320, 357, 962
BspPI GGATC 6 cut(s) 350, 363, 369, 389, 680, 1100
BspQI GCTCTTC 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 476
BsrDI GCAATG 1 cut(s) 1149
BsrFI RCCGGY 3 cut(s) 275, 876, 968
BsrI ACTGG 2 cut(s) 744, 962
BssAI RCCGGY 3 cut(s) 275, 876, 968
BssECI CCNNGG 1 cut(s) 834
BssMI GATC 5 cut(s) 355, 361, 381, 672, 1105
BssSI CACGAG 1 cut(s) 881
BssT1I CCWWGG 1 cut(s) 834
Bst2BI CACGAG 1 cut(s) 881
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 3 cut(s) 494, 512, 871
Bst6I CTCTTC 1 cut(s) 341
BstBAI YACGTR 2 cut(s) 245, 500
BstC8I GCNNGC 6 cut(s) 112, 729, 878, 970, 985, 989
BstDEI CTNAG 3 cut(s) 104, 707, 816
BstF5I GGATG 4 cut(s) 114, 190, 323, 813
BstFNI CGCG 2 cut(s) 918, 945
BstHHI GCGC 2 cut(s) 918, 945
BstKTI GATC 5 cut(s) 358, 364, 384, 675, 1108
BstMAI GTCTC 4 cut(s) 476, 540, 790, 860
BstMBI GATC 5 cut(s) 355, 361, 381, 672, 1105
BstMCI CGRYCG 1 cut(s) 493
BstMWI GCNNNNNNNGC 3 cut(s) 809, 1030, 1039
BstNI CCWGG 1 cut(s) 782
BstNSI RCATGY 2 cut(s) 731, 916
BstPAI GACNNNNGTC 1 cut(s) 245
BstSCI CCNGG 3 cut(s) 780, 1071, 1108
BstSLI GKGCMC 1 cut(s) 112
BstUI CGCG 2 cut(s) 918, 945
BstV1I GCAGC 2 cut(s) 736, 1033
BstX2I RGATCY 3 cut(s) 355, 381, 1105
BstYI RGATCY 3 cut(s) 355, 381, 1105
BtsCI GGATG 4 cut(s) 114, 190, 323, 813
BtsIMutI CAGTG 2 cut(s) 389, 737
Cac8I GCNNGC 6 cut(s) 112, 729, 878, 970, 985, 989
CciI TCATGA 1 cut(s) 1059
CfoI GCGC 2 cut(s) 918, 945
Cfr10I RCCGGY 3 cut(s) 275, 876, 968
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 135, 495
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 5 cut(s) 370, 416, 728, 913, 1060
CviQI GTAC 2 cut(s) 135, 495
DdeI CTNAG 3 cut(s) 104, 707, 816
DpnI GATC 5 cut(s) 357, 363, 383, 674, 1107
DpnII GATC 5 cut(s) 355, 361, 381, 672, 1105
DraIII CACNNNGTG 1 cut(s) 710
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
EciI GGCGGA 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 834
Eco31I GGTCTC 1 cut(s) 476
Eco32I GATATC 1 cut(s) 487
Eco57I CTGAAG 2 cut(s) 515, 1013
Eco72I CACGTG 2 cut(s) 245, 500
Eco88I CYCGRG 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 780
EcoRV GATATC 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 834
ErhI CCWWGG 1 cut(s) 834
Esp3I CGTCTC 1 cut(s) 860
FaeI CATG 5 cut(s) 373, 419, 731, 916, 1063
FatI CATG 5 cut(s) 369, 415, 727, 912, 1059
Fnu4HI GCNGC 7 cut(s) 312, 750, 813, 828, 946, 973, 1022
FokI GGATG 4 cut(s) 101, 197, 310, 820
Fsp4HI GCNGC 7 cut(s) 312, 750, 813, 828, 946, 973, 1022
FspBI CTAG 6 cut(s) 551, 800, 804, 1025, 1077, 1103
GlaI GCGC 2 cut(s) 917, 944
GluI GCNGC 7 cut(s) 312, 750, 813, 828, 946, 973, 1022
GsuI CTGGAG 1 cut(s) 1055
HapII CCGG 7 cut(s) 276, 359, 670, 877, 969, 1072, 1110
HgaI GACGC 1 cut(s) 103
HhaI GCGC 2 cut(s) 918, 945
Hin1II CATG 5 cut(s) 373, 419, 731, 916, 1063
Hin6I GCGC 2 cut(s) 916, 943
HinP1I GCGC 2 cut(s) 916, 943
HindIII AAGCTT 2 cut(s) 101, 284
HinfI GANTC 4 cut(s) 221, 269, 299, 1099
HpaII CCGG 7 cut(s) 276, 359, 670, 877, 969, 1072, 1110
HphI GGTGA 1 cut(s) 883
Hpy166II GTNNAC 3 cut(s) 110, 497, 853
Hpy188I TCNGA 6 cut(s) 119, 381, 430, 521, 637, 1116
Hpy188III TCNNGA 5 cut(s) 147, 303, 359, 1060, 1103
Hpy8I GTNNAC 3 cut(s) 110, 497, 853
Hpy99I CGWCG 1 cut(s) 793
HpyAV CCTTC 2 cut(s) 220, 1087
HpyCH4III ACNGT 3 cut(s) 494, 512, 871
HpyCH4IV ACGT 3 cut(s) 44, 244, 499
HpyCH4V TGCA 6 cut(s) 110, 140, 419, 731, 737, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 809, 1030, 1039
HpyF3I CTNAG 3 cut(s) 104, 707, 816
HpySE526I ACGT 3 cut(s) 44, 244, 499
Hsp92II CATG 5 cut(s) 373, 419, 731, 916, 1063
HspAI GCGC 2 cut(s) 916, 943
Kpn2I TCCGGA 1 cut(s) 358
KroI GCCGGC 2 cut(s) 876, 968
KroNI GCCGGC 2 cut(s) 878, 970
Kzo9I GATC 5 cut(s) 355, 361, 381, 672, 1105
LguI GCTCTTC 1 cut(s) 341
LmnI GCTCC 8 cut(s) 284, 324, 343, 559, 839, 940, 966, 1039
Lsp1109I GCAGC 2 cut(s) 736, 1033
LweI GCATC 6 cut(s) 123, 149, 355, 442, 620, 814
MaeI CTAG 6 cut(s) 551, 800, 804, 1025, 1077, 1103
MaeII ACGT 3 cut(s) 44, 244, 499
MaeIII GTNAC 4 cut(s) 187, 250, 694, 721
MalI GATC 5 cut(s) 357, 363, 383, 674, 1107
MboI GATC 5 cut(s) 355, 361, 381, 672, 1105
MboII GAAGA 3 cut(s) 206, 328, 1006
MflI RGATCY 3 cut(s) 355, 381, 1105
MhlI GDGCHC 2 cut(s) 112, 912
MluCI AATT 7 cut(s) 75, 166, 581, 609, 660, 714, 1123
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 8 cut(s) 35, 49, 239, 781, 786, 943, 946, 1030
MroI TCCGGA 1 cut(s) 358
MroNI GCCGGC 2 cut(s) 876, 968
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 687
MspA1I CMGCKG 1 cut(s) 991
MspI CCGG 7 cut(s) 276, 359, 670, 877, 969, 1072, 1110
MspR9I CCNGG 3 cut(s) 782, 1073, 1110
MvaI CCWGG 1 cut(s) 782
MvnI CGCG 2 cut(s) 918, 945
MwoI GCNNNNNNNGC 3 cut(s) 809, 1030, 1039
NaeI GCCGGC 2 cut(s) 878, 970
NciI CCSGG 2 cut(s) 1073, 1110
NdeII GATC 5 cut(s) 355, 361, 381, 672, 1105
NgoMIV GCCGGC 2 cut(s) 876, 968
NlaIII CATG 5 cut(s) 373, 419, 731, 916, 1063
NlaIV GGNNCC 4 cut(s) 280, 320, 357, 962
NmeAIII GCCGAG 2 cut(s) 295, 868
NmuCI GTSAC 2 cut(s) 250, 721
NspI RCATGY 2 cut(s) 731, 916
PaeI GCATGC 1 cut(s) 731
PaeR7I CTCGAG 1 cut(s) 653
PagI TCATGA 1 cut(s) 1059
PciSI GCTCTTC 1 cut(s) 341
PdiI GCCGGC 2 cut(s) 878, 970
PfeI GAWTC 3 cut(s) 221, 269, 1099
PkrI GCNGC 7 cut(s) 313, 751, 814, 829, 947, 974, 1023
PleI GAGTC 1 cut(s) 307
PmaCI CACGTG 2 cut(s) 245, 500
PmlI CACGTG 2 cut(s) 245, 500
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 2 cut(s) 245, 500
PshAI GACNNNNGTC 1 cut(s) 245
PsiI TTATAA 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 780
PspCI CACGTG 2 cut(s) 245, 500
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 4 cut(s) 280, 320, 357, 962
PspXI VCTCGAGB 1 cut(s) 653
PsuI RGATCY 3 cut(s) 355, 381, 1105
PvuII CAGCTG 1 cut(s) 991
RsaI GTAC 2 cut(s) 136, 496
RsaNI GTAC 2 cut(s) 135, 495
RseI CAYNNNNRTG 1 cut(s) 687
SapI GCTCTTC 1 cut(s) 341
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 7 cut(s) 312, 750, 813, 828, 946, 973, 1022
Sau3AI GATC 5 cut(s) 355, 361, 381, 672, 1105
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 782, 1073, 1110
SduI GDGCHC 2 cut(s) 112, 912
SfaNI GCATC 6 cut(s) 123, 149, 355, 442, 620, 814
Sfr274I CTCGAG 1 cut(s) 653
SlaI CTCGAG 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 2 cut(s) 653, 905
SmoI CTYRAG 2 cut(s) 653, 905
SphI GCATGC 1 cut(s) 731
Sse9I AATT 7 cut(s) 75, 166, 581, 609, 660, 714, 1123
SsiI CCGC 9 cut(s) 214, 311, 447, 459, 812, 827, 918, 945, 972
SspI AATATT 1 cut(s) 63
SspMI CTAG 6 cut(s) 551, 800, 804, 1025, 1077, 1103
StyD4I CCNGG 3 cut(s) 780, 1071, 1108
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 3 cut(s) 494, 512, 871
TaiI ACGT 3 cut(s) 47, 247, 502
TaqI TCGA 7 cut(s) 231, 302, 489, 654, 777, 791, 822
TasI AATT 7 cut(s) 75, 166, 581, 609, 660, 714, 1123
TatI WGTACW 1 cut(s) 134
TauI GCSGC 5 cut(s) 314, 815, 830, 948, 975
TfiI GAWTC 3 cut(s) 221, 269, 1099
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 396, 744
TseFI GTSAC 2 cut(s) 250, 721
TseI GCWGC 2 cut(s) 749, 1021
Tsp45I GTSAC 2 cut(s) 250, 721
TspDTI ATGAA 1 cut(s) 1048
TspRI CASTG 2 cut(s) 396, 744
VneI GTGCAC 1 cut(s) 108
XapI RAATTY 3 cut(s) 581, 609, 660
XbaI TCTAGA 1 cut(s) 1102
XceI RCATGY 2 cut(s) 731, 916
XhoI CTCGAG 1 cut(s) 653
XspI CTAG 6 cut(s) 551, 800, 804, 1025, 1077, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.