Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8187462.1

Orthogroup ID

OG0006589

Physical Location & Seq

Genomic Coordinates Reverse (-)

15 .. 356

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8187462.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atggcggctcagctcgatgcggctaccaagggagcttacatagtaaacagggatttggagacggtgagccggctcgtggctcggctaaacgatgagcttgagcacatgcgcggaatggttcagttttgggtggagcgcggcgaggaggactggctccaagccggcggcgaagtggcacgccagctgaagaaaaatgattgtagctttagacagcagctagatgagctggaggagcatttgtatctgtgtttcatgactataaaccgggctagaaatcttgtagtgaaggagattctagatcctggtcagaccaccaattcacataccacattagcaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

113

Amino Acids

12.99

Weight (kDa)

5.14

Isoelectric Point (pI)

23.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49070 AT3G49070
fragaria_vesca	FvH4_7g30010 FvH4_7g30010 FvH4_7g30010 FvH4_7g30010
malus_domestica	MD07G1276600.v1.1
prunus_persica	Prupe.2G298700_v2.0.a1 Prupe.2G298700_v2.0.a1 Prupe.2G298700_v2.0.a1 Prupe.2G298700_v2.0.a1
pyrus_communis	pycom07g25160
rosa_chinensis	RchiOBHm_Chr1g0377951
rosa_laevigata	RLG00000026483
rosa_multiflora	Rmu_co8187462.1_g000001 Rmu_sc0002068.1_g000008 Rmu_sc0006294.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280900
rosa_rugosa	Rorug01G0405400 Rorug01G0405400 Rorug01G0405900.1
rosa_samantha	Rh1AG425600 Rh1BG383400 Rh1CG397200 Rh1DG414400
rosa_wichuraiana	Rw1G037270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	111, 138
AciI	CCGC	5 cut(s)	5, 20, 111, 138, 165
AclWI	GGATC	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	7 cut(s)	13, 35, 97, 184, 204, 217, 226
AluI	AGCT	7 cut(s)	13, 35, 97, 184, 204, 217, 226
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	111, 138
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	76
BauI	CACGAG	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	3 cut(s)	218, 270, 296
BisI	GCNGC	5 cut(s)	6, 21, 139, 166, 215
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	5 cut(s)	7, 22, 140, 167, 216
Bme1390I	CCNGG	2 cut(s)	266, 303
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	266, 303
BmsI	GCATC	1 cut(s)	7
BpmI	CTGGAG	1 cut(s)	248
Bpu1102I	GCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	2 cut(s)	69, 161
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	2 cut(s)	158, 245
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	2 cut(s)	111, 138
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	70, 162, 265
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	53
BsmBI	CGTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	298
Bsp1720I	GCTNAGC	1 cut(s)	9
BspACI	CCGC	5 cut(s)	5, 20, 111, 138, 165
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	2 cut(s)	111, 138
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	2 cut(s)	69, 161
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	2 cut(s)	69, 161
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	298
BssSI	CACGAG	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	64
BstC8I	GCNNGC	4 cut(s)	71, 163, 178, 182
BstDEI	CTNAG	1 cut(s)	9
BstFNI	CGCG	2 cut(s)	111, 138
BstHHI	GCGC	2 cut(s)	111, 138
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 232
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	264, 301
BstUI	CGCG	2 cut(s)	111, 138
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
Cac8I	GCNNGC	4 cut(s)	71, 163, 178, 182
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	2 cut(s)	111, 138
Cfr10I	RCCGGY	2 cut(s)	69, 161
CviAII	CATG	2 cut(s)	106, 253
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	2 cut(s)	109, 256
FaiI	YATR	5 cut(s)	41, 107, 254, 260, 324
FatI	CATG	2 cut(s)	105, 252
Fnu4HI	GCNGC	5 cut(s)	6, 21, 139, 166, 215
Fsp4HI	GCNGC	5 cut(s)	6, 21, 139, 166, 215
FspBI	CTAG	3 cut(s)	218, 270, 296
GlaI	GCGC	2 cut(s)	110, 137
GluI	GCNGC	5 cut(s)	6, 21, 139, 166, 215
GsuI	CTGGAG	1 cut(s)	248
HapII	CCGG	3 cut(s)	70, 162, 265
HhaI	GCGC	2 cut(s)	111, 138
Hin1II	CATG	2 cut(s)	109, 256
Hin6I	GCGC	2 cut(s)	109, 136
HinP1I	GCGC	2 cut(s)	109, 136
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	3 cut(s)	70, 162, 265
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	2 cut(s)	253, 296
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 232
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	109, 256
HspAI	GCGC	2 cut(s)	109, 136
KroI	GCCGGC	2 cut(s)	69, 161
KroNI	GCCGGC	2 cut(s)	71, 163
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	4 cut(s)	32, 133, 159, 232
LpnPI	CCDG	9 cut(s)	34, 83, 136, 175, 194, 212, 278, 288, 315
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	3 cut(s)	218, 270, 296
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	1 cut(s)	316
MnlI	CCTC	3 cut(s)	136, 139, 223
MroNI	GCCGGC	2 cut(s)	69, 161
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	3 cut(s)	70, 162, 265
MspR9I	CCNGG	2 cut(s)	266, 303
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	2 cut(s)	111, 138
MwoI	GCNNNNNNNGC	2 cut(s)	223, 232
NaeI	GCCGGC	2 cut(s)	71, 163
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	298
NgoMIV	GCCGGC	2 cut(s)	69, 161
NlaIII	CATG	2 cut(s)	109, 256
NlaIV	GGNNCC	1 cut(s)	155
NmeAIII	GCCGAG	1 cut(s)	61
NspI	RCATGY	1 cut(s)	109
PagI	TCATGA	1 cut(s)	252
PdiI	GCCGGC	2 cut(s)	71, 163
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	5 cut(s)	7, 22, 140, 167, 216
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	184
SatI	GCNGC	5 cut(s)	6, 21, 139, 166, 215
Sau3AI	GATC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	266, 303
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	7 cut(s)	15, 37, 99, 186, 206, 219, 228
SfaNI	GCATC	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	316
SsiI	CCGC	5 cut(s)	5, 20, 111, 138, 165
SspMI	CTAG	3 cut(s)	218, 270, 296
StyD4I	CCNGG	2 cut(s)	264, 301
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	15
TasI	AATT	1 cut(s)	316
TauI	GCSGC	4 cut(s)	8, 23, 141, 168
TfiI	GAWTC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	241
XbaI	TCTAGA	1 cut(s)	295
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	3 cut(s)	218, 270, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.