Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018545

Physical Location & Seq

Genomic Coordinates Forward (+)

66229549 .. 66230718

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGATGTTCCGAATGAATGACGTCCAACTGCATTTCACGGAAAGTGCCTTGAGGCTAATTGCCAAGAAAGCAATATCAAAGAACACTGGGGCTCGTGGATTACGAGCAATTTTAGAAACTATATTAACGGGTACCATGTATGAGATTCCTGACGTTAGAATTGGTGATGACATAATAGATGCAGTTGTAATTGATGAAGAGGCAGTTGGAACTGATGGCCAGGGTTGTGGAGCTAAGATCCTTTATGGTAAGGGTGCATTGGATCAGTATCTTTCAAAAAATAAAGAGAAGGATGTTCAGGTATGTAATTTATCCACATATATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

109

Amino Acids

12.01

Weight (kDa)

5.78

Isoelectric Point (pI)

16.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpB_D2-small	PF10431	6 - 48	6e-08	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0380611
rosa_laevigata	RLG00000026282
rosa_multiflora	Rmu_co7971634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279140 Rroxscaffold_7G00217850
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1BG402700 Rh1CG417100 Rh1DG433000 Rh7CG247800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
Acc65I	GGTACC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	131
AclWI	GGATC	2 cut(s)	232, 270
AcoI	YGGCCR	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	276
AjnI	CCWGG	1 cut(s)	219
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
AlwI	GGATC	2 cut(s)	232, 270
AoxI	GGCC	1 cut(s)	217
Asp718I	GGTACC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	93
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	237, 262
BspANI	GGCC	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	2 cut(s)	232, 270
BspT107I	GGYRCC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	237, 262
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	192
BstACI	GRCGYC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	2 cut(s)	240, 265
BstMBI	GATC	2 cut(s)	237, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	4 cut(s)	55, 92, 219, 233
CviKI_1	RGCY	4 cut(s)	55, 92, 219, 233
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	239, 264
DpnII	GATC	2 cut(s)	237, 262
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	1 cut(s)	139
FaiI	YATR	8 cut(s)	122, 137, 141, 173, 246, 304, 319, 321
FatI	CATG	1 cut(s)	135
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	1 cut(s)	145
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	283
HpyCH4IV	ACGT	2 cut(s)	21, 153
HpyCH4V	TGCA	3 cut(s)	31, 182, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	2 cut(s)	21, 153
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	139
KpnI	GGTACC	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	237, 262
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	5 cut(s)	72, 162, 206, 233, 284
LweI	GCATC	1 cut(s)	169
MaeII	ACGT	2 cut(s)	21, 153
MalI	GATC	2 cut(s)	239, 264
MboI	GATC	2 cut(s)	237, 262
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	5 cut(s)	57, 108, 159, 189, 307
MluNI	TGGCCA	1 cut(s)	219
MmeI	TCCRAC	2 cut(s)	49, 187
MnlI	CCTC	2 cut(s)	45, 193
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	2 cut(s)	125, 328
Msp20I	TGGCCA	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	2 cut(s)	237, 262
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	125, 328
Sau3AI	GATC	2 cut(s)	237, 262
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	4 cut(s)	24, 156, 235, 303
SfaNI	GCATC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	5 cut(s)	57, 108, 159, 189, 307
StyD4I	CCNGG	1 cut(s)	219
TaiI	ACGT	2 cut(s)	24, 156
TasI	AATT	5 cut(s)	57, 108, 159, 189, 307
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	125, 328
Tru9I	TTAA	2 cut(s)	125, 328
TscAI	CASTG	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	29, 210
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	91
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.