Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Reverse (-)

52368627 .. 52372979

Gene Structure 4353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0423000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATGCTCAGCGAGCTCTGCTGGACGAACTCATGGGCGCAGCTCGGAATTTGACGGAGGAAGAGAGAAAAGGGTACAAGGAGATCACTTGGGACTCTAAGGAGGTTTGCGGAGCCTATATGGTTCGGTTTTGTCCTCATGATCTGTTTGTCAATACCCGAAGCGATCTAGGGTCGTGCCCCAGAATACATGACTCTAAGCTGAAAGAAAGTTTCGAGAAGTCTCCAAGGCATGCTGCGTATGTGCCAAGGTTTGAAGCTGATCTTGCTCAGTTTTGTGAGAAATTGGTGATGGATTTGGATAGAAGAGTTAAGCGTGGGCGAGAACGCCTTTCTCAGGAGGTGGAACCTCCACCACAACCTCCTCTGTCAGCTGAAAAGTCTGAACAGTTATCTGTTGTGGAGGAAAAAATAAAGAACTTATTGGAACAAGCGGAGGAGCTTGGTGCATCTGGGAAGGTGGATGAAGCTGAAGCACTGATGAGAAAGGTGGATGTGCTTAATGTTGAGAAAACAGTCTTGGCTCTACAGCCCCCAAATGCTCAACCATTGATGGTTCCACAGGAGAAAAAAATGGCACTCTGTGAGATATGTGGTTCATTTCTTGTGGCCAATGATGCTTTAGAGAGGACTCAATCTCATGTCACTGGGAAGCAGCATATTGGTTATGGCATGGTCCGGGATTTTATTGCTGAGTACAAGGCAGCTAAGGAGAAAGCAAGGGAAGAAGAAAAGTTAGCTAGGGAGAAAGAAGCAGAAGAACGGAGGAAACAGCTGGAGAAGGAAAATGAGAGTAGAAGGAGAAGTGGTTCAAGTGACAGGGACAGGTATCGTGATAGAGATCGTGACAGATATCGAGAACGTGACTTGGATCGTGAAAGGTCAAGAGAGTGGACTGGTAGGGGTGGTCGGGATGGTGGAAGAGGGGTGGATTGGAGGTCCAGGAATGGAAGAGATGCAGGCAGGGATAGGTACCGTAATCGAAGCAGGTCACGTTCCCCTGTTAGACATACCCACAGGAGGTCACCTAGGAGTCCAGTTCGCCCGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

350

Amino Acids

40.72

Weight (kDa)

9.26

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LUC7	PF03194	2 - 250	2.7e-84	LUC7 N_terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	978
Acc65I	GGTACC	1 cut(s)	972
AccB1I	GGYRCC	1 cut(s)	972
AciI	CCGC	2 cut(s)	111, 434
AclWI	GGATC	1 cut(s)	879
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	492
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	3 cut(s)	77, 698, 974
AfiI	CCNNNNNNNGG	2 cut(s)	337, 1020
AgsI	TTSAA	2 cut(s)	257, 813
AjnI	CCWGG	1 cut(s)	941
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AloI	GAACNNNNNNTCC	2 cut(s)	793, 825
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	879
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	4 cut(s)	41, 236, 655, 704
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	808
Asp718I	GGTACC	1 cut(s)	972
AspA2I	CCTAGG	1 cut(s)	1028
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	676, 939
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	2 cut(s)	301, 1017
AvaII	GGWCC	2 cut(s)	676, 939
AvrII	CCTAGG	1 cut(s)	1028
BaeGI	GKGCMC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	972
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	4 cut(s)	53, 223, 667, 716
BccI	CCATC	3 cut(s)	286, 547, 908
BciT130I	CCWGG	1 cut(s)	943
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	3 cut(s)	170, 741, 1029
BfmI	CTRYAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	978
BisI	GCNGC	4 cut(s)	42, 237, 656, 705
BlnI	CCTAGG	1 cut(s)	1028
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	4 cut(s)	43, 238, 657, 706
Bme1390I	CCNGG	2 cut(s)	680, 943
Bme18I	GGWCC	2 cut(s)	676, 939
BmgT120I	GGNCC	2 cut(s)	676, 939
BmiI	GGNNCC	4 cut(s)	115, 348, 558, 974
BmrFI	CCNGG	2 cut(s)	680, 943
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	3 cut(s)	458, 607, 946
BmuI	ACTGGG	1 cut(s)	657
BpmI	CTGGAG	1 cut(s)	797
Bpu10I	CCTNAGC	1 cut(s)	708
Bpu1102I	GCTNAGC	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	680
BsaBI	GATNNNNATC	1 cut(s)	840
BsaJI	CCNNGG	3 cut(s)	227, 248, 1028
BsaXI	ACNNNNNCTCC	2 cut(s)	793, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 1020
Bse1I	ACTGG	3 cut(s)	652, 901, 1037
Bse8I	GATNNNNATC	1 cut(s)	840
BseBI	CCWGG	1 cut(s)	943
BseDI	CCNNGG	3 cut(s)	227, 248, 1028
BseGI	GGATG	4 cut(s)	10, 469, 499, 919
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	2 cut(s)	337, 1020
BseMII	CTCAG	4 cut(s)	23, 284, 350, 684
BseNI	ACTGG	3 cut(s)	652, 901, 1037
BseRI	GAGGAG	2 cut(s)	354, 452
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	4 cut(s)	53, 223, 667, 716
BshFI	GGCC	1 cut(s)	611
BshNI	GGYRCC	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	679
BslFI	GGGAC	2 cut(s)	107, 836
BslI	CCNNNNNNNGG	2 cut(s)	337, 1020
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	107, 836
BsnI	GGCC	1 cut(s)	611
Bsp1286I	GDGCHC	2 cut(s)	19, 182
Bsp143I	GATC	6 cut(s)	84, 142, 166, 262, 841, 871
Bsp1720I	GCTNAGC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	111, 434
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	4 cut(s)	22, 283, 349, 685
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	4 cut(s)	115, 348, 558, 974
BspMI	ACCTGC	1 cut(s)	978
BspPI	GGATC	1 cut(s)	879
BspT107I	GGYRCC	1 cut(s)	972
BsrI	ACTGG	3 cut(s)	652, 901, 1037
BssECI	CCNNGG	3 cut(s)	227, 248, 1028
BssMI	GATC	6 cut(s)	84, 142, 166, 262, 841, 871
BssT1I	CCWWGG	3 cut(s)	227, 248, 1028
Bst2UI	CCWGG	1 cut(s)	943
Bst4CI	ACNGT	3 cut(s)	390, 517, 977
Bst6I	CTCTTC	4 cut(s)	57, 301, 916, 946
BstC8I	GCNNGC	3 cut(s)	15, 234, 961
BstDEI	CTNAG	7 cut(s)	9, 99, 198, 270, 336, 693, 708
BstEII	GGTNACC	1 cut(s)	1023
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	4 cut(s)	10, 469, 499, 919
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	6 cut(s)	87, 145, 169, 265, 844, 874
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	6 cut(s)	84, 142, 166, 262, 841, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 19, 266, 617
BstNI	CCWGG	1 cut(s)	943
BstNSI	RCATGY	1 cut(s)	236
BstPI	GGTNACC	1 cut(s)	1023
BstSCI	CCNGG	2 cut(s)	678, 941
BstSFI	CTRYAG	1 cut(s)	527
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	4 cut(s)	53, 223, 667, 716
BsuRI	GGCC	1 cut(s)	611
BtsCI	GGATG	4 cut(s)	10, 469, 499, 919
BtsIMutI	CAGTG	2 cut(s)	476, 645
BveI	ACCTGC	1 cut(s)	978
Cac8I	GCNNGC	3 cut(s)	15, 234, 961
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	676, 939
Csp6I	GTAC	3 cut(s)	76, 697, 973
CviAII	CATG	6 cut(s)	34, 140, 191, 233, 641, 673
CviQI	GTAC	3 cut(s)	76, 697, 973
DdeI	CTNAG	7 cut(s)	9, 99, 198, 270, 336, 693, 708
DpnI	GATC	6 cut(s)	86, 144, 168, 264, 843, 873
DpnII	GATC	6 cut(s)	84, 142, 166, 262, 841, 871
DraIII	CACNNNGTG	1 cut(s)	584
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	4 cut(s)	57, 301, 916, 946
EarI	CTCTTC	4 cut(s)	57, 301, 916, 946
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	3 cut(s)	227, 248, 1028
Eco24I	GRGCYC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	854
Eco47I	GGWCC	2 cut(s)	676, 939
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	492
Eco91I	GGTNACC	1 cut(s)	1023
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	1023
EcoRII	CCWGG	1 cut(s)	941
EcoRV	GATATC	1 cut(s)	854
EcoT14I	CCWWGG	3 cut(s)	227, 248, 1028
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	3 cut(s)	227, 248, 1028
FaeI	CATG	6 cut(s)	37, 143, 194, 236, 644, 676
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	2 cut(s)	107, 836
FatI	CATG	6 cut(s)	33, 139, 190, 232, 640, 672
Fnu4HI	GCNGC	4 cut(s)	42, 237, 656, 705
FokI	GGATG	4 cut(s)	17, 476, 506, 926
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	4 cut(s)	42, 237, 656, 705
FspBI	CTAG	3 cut(s)	170, 741, 1029
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	4 cut(s)	42, 237, 656, 705
GsuI	CTGGAG	1 cut(s)	797
HaeIII	GGCC	1 cut(s)	611
HapII	CCGG	1 cut(s)	679
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	6 cut(s)	37, 143, 194, 236, 644, 676
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	4 cut(s)	95, 194, 631, 1033
HpaII	CCGG	1 cut(s)	679
HphI	GGTGA	2 cut(s)	301, 1017
Hpy166II	GTNNAC	1 cut(s)	894
Hpy188I	TCNGA	2 cut(s)	48, 385
Hpy188III	TCNNGA	9 cut(s)	140, 217, 338, 833, 845, 857, 875, 885, 911
Hpy8I	GTNNAC	1 cut(s)	894
HpyAV	CCTTC	3 cut(s)	451, 775, 792
HpyCH4III	ACNGT	3 cut(s)	390, 517, 977
HpyCH4IV	ACGT	2 cut(s)	862, 994
HpyCH4V	TGCA	2 cut(s)	449, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 19, 266, 617
HpyF3I	CTNAG	7 cut(s)	9, 99, 198, 270, 336, 693, 708
HpySE526I	ACGT	2 cut(s)	862, 994
Hsp92II	CATG	6 cut(s)	37, 143, 194, 236, 644, 676
HspAI	GCGC	1 cut(s)	39
KpnI	GGTACC	1 cut(s)	976
Kzo9I	GATC	6 cut(s)	84, 142, 166, 262, 841, 871
LmnI	GCTCC	2 cut(s)	113, 439
Lsp1109I	GCAGC	4 cut(s)	53, 223, 667, 716
LweI	GCATC	3 cut(s)	458, 607, 946
MaeI	CTAG	3 cut(s)	170, 741, 1029
MaeII	ACGT	2 cut(s)	862, 994
MaeIII	GTNAC	6 cut(s)	643, 815, 845, 863, 990, 1023
MalI	GATC	6 cut(s)	86, 144, 168, 264, 843, 873
MboI	GATC	6 cut(s)	84, 142, 166, 262, 841, 871
MboII	GAAGA	7 cut(s)	74, 318, 737, 740, 770, 933, 963
MhlI	GDGCHC	2 cut(s)	19, 182
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	2 cut(s)	49, 284
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	4 cut(s)	89, 188, 625, 1042
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	808
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	3 cut(s)	312, 501, 1051
Msp20I	TGGCCA	1 cut(s)	611
MspA1I	CMGCKG	2 cut(s)	374, 775
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	2 cut(s)	680, 943
MvaI	CCWGG	1 cut(s)	943
MwoI	GCNNNNNNNGC	4 cut(s)	14, 19, 266, 617
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	6 cut(s)	84, 142, 166, 262, 841, 871
NlaIII	CATG	6 cut(s)	37, 143, 194, 236, 644, 676
NlaIV	GGNNCC	4 cut(s)	115, 348, 558, 974
NmuCI	GTSAC	6 cut(s)	643, 815, 845, 863, 990, 1023
NspI	RCATGY	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	236
PagI	TCATGA	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	808
PfoI	TCCNGGA	2 cut(s)	678, 941
PkrI	GCNGC	4 cut(s)	43, 238, 657, 706
PleI	GAGTC	4 cut(s)	89, 188, 625, 1041
PpsI	GAGTC	4 cut(s)	89, 188, 625, 1041
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	941
PspEI	GGTNACC	1 cut(s)	1023
PspGI	CCWGG	1 cut(s)	941
PspN4I	GGNNCC	4 cut(s)	115, 348, 558, 974
PspPI	GGNCC	2 cut(s)	676, 939
PvuII	CAGCTG	2 cut(s)	374, 775
RsaI	GTAC	3 cut(s)	77, 698, 974
RsaNI	GTAC	3 cut(s)	76, 697, 973
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	3 cut(s)	312, 501, 1051
SatI	GCNGC	4 cut(s)	42, 237, 656, 705
Sau3AI	GATC	6 cut(s)	84, 142, 166, 262, 841, 871
Sau96I	GGNCC	2 cut(s)	676, 939
SchI	GAGTC	4 cut(s)	89, 188, 625, 1042
ScrFI	CCNGG	2 cut(s)	680, 943
SduI	GDGCHC	2 cut(s)	19, 182
SfaNI	GCATC	3 cut(s)	458, 607, 946
SfcI	CTRYAG	1 cut(s)	527
SinI	GGWCC	2 cut(s)	676, 939
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	2 cut(s)	49, 284
SsiI	CCGC	2 cut(s)	111, 434
SspMI	CTAG	3 cut(s)	170, 741, 1029
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	2 cut(s)	678, 941
StyI	CCWWGG	3 cut(s)	227, 248, 1028
TaaI	ACNGT	3 cut(s)	390, 517, 977
TaiI	ACGT	2 cut(s)	865, 997
TaqI	TCGA	3 cut(s)	216, 856, 982
TasI	AATT	2 cut(s)	49, 284
TatI	WGTACW	1 cut(s)	696
Tru1I	TTAA	3 cut(s)	312, 501, 1051
Tru9I	TTAA	3 cut(s)	312, 501, 1051
TscAI	CASTG	2 cut(s)	483, 652
TseFI	GTSAC	6 cut(s)	643, 815, 845, 863, 990, 1023
TseI	GCWGC	4 cut(s)	41, 236, 655, 704
Tsp45I	GTSAC	6 cut(s)	643, 815, 845, 863, 990, 1023
TspDTI	ATGAA	2 cut(s)	480, 588
TspGWI	ACGGA	2 cut(s)	71, 778
TspRI	CASTG	2 cut(s)	483, 652
VpaK11BI	GGWCC	2 cut(s)	676, 939
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	236
XmaJI	CCTAGG	1 cut(s)	1028
XmnI	GAANNNNTTC	1 cut(s)	808
XspI	CTAG	3 cut(s)	170, 741, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.