Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Forward (+)

34966306 .. 34969128

Gene Structure 2823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1288600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGACTTGGAAAGCATCGAGTGTGTGTCGTCCTCAGATGGACTTGATGAGGACGAGATCCATCCCCACCATAACACTACTCTGCACCCGCATTCTCACCCTCATCCGCACCACCATGAATTTTCCAAGCCCAGAAGCAATGTCACTACCAACGCTACCATTGCCGGCCCCACCTCCATCGCTCCCGCCACCAGCGTCCACGAGCTGCTCGAATGCCCTGTCTGCACCAATTCCATGTACCCGCCAATTCATCAGTGCCACAATGGCCACACACTGTGTTCCACTTGTAAGTCGAGGGTGCATAATCGTTGCCCAACTTGTAGGCAGGAGCTTGGAGATATTAGGTGCTTAGCTCTGGAGAAGGTGGCTGAGTCACTTGAGTTACCCTGCAAGTATTACTCCTTGGGATGCCCAGAGATATTCCCGTATTACAGCAAACTAAAGCATGAATCGGTGTGCAACTTCAGACCGTATAATTGCCCTTATGCTGGATCGGAGTGCTCTGTTGTTGGAGATATCCCTTTCCTGGTTACCCATCTAAGGGATGATCACAAGGTGGACATGCACACAGGATGCACATTCAACCATCGCTATGTGAAGTCAAATCCTCGGGAAGTAGAGAATGCCACTTGGATGCTAACAGTTTTCCATTGTTTTGGTCAATACTTCTGCCTTCATTTTGAAGCCTTCCAGCTCGGCATGGCTCCTGTTTATATGGCATTTCTACGTTTTATGGGCGACGAGAATGAGGCCCGGAACTACAGCTACAGCCTAGAGGTTGGAGCCAATGGCAGGAAACTCATATGGGAGGGGACGCCACGAAGTGTGCGTGATAGCCACCGAAAGGTCAGGGATAGCCACGATGGTCTCATTATCCAACGAAACATGGCTCTATTCTTCTCTGGAGGCGACAGGAAGGAGCTGAAGCTGAGAGTTACCGGGAGGATATGGAAGGAACAGCAAAATCAGGATTCCGGGGTGTGCATAGCAAACCTGTGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

335

Amino Acids

38.01

Weight (kDa)

6.55

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	72 - 107	2.5e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	121 - 196	2.8e-30	Sina, zinc finger
Sina_TRAF	PF03145	216 - 313	1.6e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	89, 107, 186, 242
AclWI	GGATC	2 cut(s)	52, 499
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	448, 944
AcyI	GRCGYC	1 cut(s)	815
AdeI	CACNNNGTG	3 cut(s)	276, 556, 824
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	6 cut(s)	488, 526, 540, 541, 792, 844
AgsI	TTSAA	2 cut(s)	583, 683
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	8 cut(s)	205, 331, 353, 694, 765, 922, 928, 1002
AluI	AGCT	8 cut(s)	205, 331, 353, 694, 765, 922, 928, 1002
Alw21I	GWGCWC	1 cut(s)	503
Alw26I	GTCTC	1 cut(s)	872
AlwI	GGATC	2 cut(s)	52, 499
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	3 cut(s)	166, 265, 750
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspS9I	GGNCC	2 cut(s)	167, 751
AsuC2I	CCSGG	3 cut(s)	754, 940, 976
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	609
BalI	TGGCCA	1 cut(s)	267
BauI	CACGAG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	6 cut(s)	32, 69, 185, 543, 594, 857
BciT130I	CCWGG	1 cut(s)	527
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	3 cut(s)	754, 940, 976
BcoDI	GTCTC	1 cut(s)	872
BfaI	CTAG	1 cut(s)	773
BfmI	CTRYAG	2 cut(s)	760, 766
BglI	GCCNNNNNGGC	1 cut(s)	264
BisI	GCNGC	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	4 cut(s)	527, 754, 940, 976
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	2 cut(s)	167, 751
BmiI	GGNNCC	3 cut(s)	169, 705, 784
BmrFI	CCNGG	4 cut(s)	527, 754, 940, 976
BmsI	GCATC	4 cut(s)	24, 398, 563, 624
BpmI	CTGGAG	2 cut(s)	377, 924
Bpu1102I	GCTNAGC	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	3 cut(s)	754, 940, 976
BsaHI	GRCGYC	1 cut(s)	815
BsaI	GGTCTC	1 cut(s)	872
BsaJI	CCNNGG	3 cut(s)	402, 608, 975
Bsc4I	CCNNNNNNNGG	6 cut(s)	488, 526, 540, 541, 792, 844
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	2 cut(s)	145, 159
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	3 cut(s)	402, 608, 975
BseGI	GGATG	6 cut(s)	61, 103, 413, 550, 578, 639
BseLI	CCNNNNNNNGG	6 cut(s)	488, 526, 540, 541, 792, 844
BseMI	GCAATG	2 cut(s)	145, 159
BseMII	CTCAG	3 cut(s)	48, 360, 920
BseXI	GCAGC	1 cut(s)	192
BsgI	GTGCAG	2 cut(s)	68, 208
BshFI	GGCC	3 cut(s)	168, 267, 752
BsiHKAI	GWGCWC	1 cut(s)	503
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	4 cut(s)	165, 754, 939, 975
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	6 cut(s)	488, 526, 540, 541, 792, 844
BsmAI	GTCTC	1 cut(s)	872
BsmFI	GGGAC	1 cut(s)	826
BsmI	GAATGC	3 cut(s)	91, 218, 628
BsnI	GGCC	3 cut(s)	168, 267, 752
Bso31I	GGTCTC	1 cut(s)	872
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	3 cut(s)	57, 491, 547
Bsp1720I	GCTNAGC	1 cut(s)	349
BspACI	CCGC	4 cut(s)	89, 107, 186, 242
BspANI	GGCC	3 cut(s)	168, 267, 752
BspCNI	CTCAG	3 cut(s)	47, 361, 921
BspLI	GGNNCC	3 cut(s)	169, 705, 784
BspPI	GGATC	2 cut(s)	52, 499
BspTNI	GGTCTC	1 cut(s)	872
BsrDI	GCAATG	2 cut(s)	145, 159
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	402, 608, 975
BssMI	GATC	3 cut(s)	57, 491, 547
BssNI	GRCGYC	1 cut(s)	815
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	3 cut(s)	276, 471, 643
BstACI	GRCGYC	1 cut(s)	815
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	5 cut(s)	34, 349, 369, 539, 929
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	6 cut(s)	61, 103, 413, 550, 578, 639
BstKTI	GATC	3 cut(s)	60, 494, 550
BstMAI	GTCTC	1 cut(s)	872
BstMBI	GATC	3 cut(s)	57, 491, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 222, 264
BstNI	CCWGG	1 cut(s)	527
BstNSI	RCATGY	1 cut(s)	565
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	4 cut(s)	525, 752, 938, 974
BstSFI	CTRYAG	2 cut(s)	760, 766
BstV1I	GCAGC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	168, 267, 752
BtgZI	GCGATG	2 cut(s)	163, 572
BtsCI	GGATG	6 cut(s)	61, 103, 413, 550, 578, 639
BtsIMutI	CAGTG	2 cut(s)	260, 272
Cac8I	GCNNGC	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	167, 751
CseI	GACGC	2 cut(s)	184, 823
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	6 cut(s)	116, 235, 446, 562, 700, 886
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	5 cut(s)	34, 349, 369, 539, 929
DpnI	GATC	3 cut(s)	59, 493, 549
DpnII	GATC	3 cut(s)	57, 491, 547
DraIII	CACNNNGTG	3 cut(s)	276, 556, 824
EaeI	YGGCCR	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	872
Eco32I	GATATC	1 cut(s)	517
Eco57I	CTGAAG	2 cut(s)	448, 944
Eco88I	CYCGRG	1 cut(s)	609
Eco91I	GGTNACC	1 cut(s)	529
EcoO65I	GGTNACC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	525
EcoRV	GATATC	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	6 cut(s)	119, 238, 449, 565, 703, 889
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	6 cut(s)	115, 234, 445, 561, 699, 885
FauI	CCCGC	3 cut(s)	96, 193, 249
FauNDI	CATATG	1 cut(s)	803
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	6 cut(s)	48, 90, 420, 557, 585, 646
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	773
GluI	GCNGC	1 cut(s)	206
GsuI	CTGGAG	2 cut(s)	377, 924
HaeIII	GGCC	3 cut(s)	168, 267, 752
HapII	CCGG	4 cut(s)	165, 754, 939, 975
HgaI	GACGC	2 cut(s)	184, 823
Hin1I	GRCGYC	1 cut(s)	815
Hin1II	CATG	6 cut(s)	119, 238, 449, 565, 703, 889
HinfI	GANTC	3 cut(s)	371, 449, 971
HpaII	CCGG	4 cut(s)	165, 754, 939, 975
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	199, 559
Hpy188I	TCNGA	3 cut(s)	37, 467, 496
Hpy188III	TCNNGA	4 cut(s)	356, 611, 903, 968
Hpy8I	GTNNAC	2 cut(s)	199, 559
Hpy99I	CGWCG	1 cut(s)	743
HpyAV	CCTTC	5 cut(s)	355, 683, 697, 910, 946
HpyCH4III	ACNGT	3 cut(s)	276, 471, 643
HpyCH4IV	ACGT	1 cut(s)	727
HpyCH4V	TGCA	8 cut(s)	85, 225, 301, 390, 459, 565, 576, 984
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 222, 264
HpyF3I	CTNAG	5 cut(s)	34, 349, 369, 539, 929
HpySE526I	ACGT	1 cut(s)	727
Hsp92I	GRCGYC	1 cut(s)	815
Hsp92II	CATG	6 cut(s)	119, 238, 449, 565, 703, 889
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	3 cut(s)	57, 491, 547
LmnI	GCTCC	5 cut(s)	187, 328, 709, 782, 919
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	4 cut(s)	24, 398, 563, 624
MaeI	CTAG	1 cut(s)	773
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	5 cut(s)	142, 372, 381, 529, 934
MalI	GATC	3 cut(s)	59, 493, 549
MboI	GATC	3 cut(s)	57, 491, 547
MboII	GAAGA	1 cut(s)	889
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	503
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	4 cut(s)	119, 229, 246, 475
MluNI	TGGCCA	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	3 cut(s)	490, 760, 901
Mox20I	TGGCCA	1 cut(s)	267
MroNI	GCCGGC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	267
MslI	CAYNNNNRTG	3 cut(s)	114, 591, 632
Msp20I	TGGCCA	1 cut(s)	267
MspI	CCGG	4 cut(s)	165, 754, 939, 975
MspR9I	CCNGG	4 cut(s)	527, 754, 940, 976
Mva1269I	GAATGC	3 cut(s)	91, 218, 628
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	3 cut(s)	161, 222, 264
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	3 cut(s)	754, 940, 976
NdeI	CATATG	1 cut(s)	803
NdeII	GATC	3 cut(s)	57, 491, 547
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	6 cut(s)	119, 238, 449, 565, 703, 889
NlaIV	GGNNCC	3 cut(s)	169, 705, 784
NmeAIII	GCCGAG	1 cut(s)	675
NmuCI	GTSAC	2 cut(s)	142, 372
NspI	RCATGY	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 826
PctI	GAATGC	3 cut(s)	91, 218, 628
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	449, 971
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	525
PspEI	GGTNACC	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	3 cut(s)	169, 705, 784
PspPI	GGNCC	2 cut(s)	167, 751
PsrI	GAACNNNNNNTAC	2 cut(s)	749, 781
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	3 cut(s)	114, 591, 632
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	3 cut(s)	57, 491, 547
Sau96I	GGNCC	2 cut(s)	167, 751
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	4 cut(s)	527, 754, 940, 976
SduI	GDGCHC	1 cut(s)	503
SfaNI	GCATC	4 cut(s)	24, 398, 563, 624
SfcI	CTRYAG	2 cut(s)	760, 766
SmiMI	CAYNNNNRTG	3 cut(s)	114, 591, 632
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	4 cut(s)	119, 229, 246, 475
SsiI	CCGC	4 cut(s)	89, 107, 186, 242
SspMI	CTAG	1 cut(s)	773
StyD4I	CCNGG	4 cut(s)	525, 752, 938, 974
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	3 cut(s)	276, 471, 643
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	3 cut(s)	18, 210, 293
TasI	AATT	4 cut(s)	119, 229, 246, 475
TfiI	GAWTC	2 cut(s)	449, 971
TscAI	CASTG	2 cut(s)	260, 279
TseFI	GTSAC	2 cut(s)	142, 372
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	2 cut(s)	142, 372
TspDTI	ATGAA	4 cut(s)	132, 239, 462, 665
TspRI	CASTG	2 cut(s)	260, 279
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	565
XspI	CTAG	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.