Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Forward (+)

66470824 .. 66473378

Gene Structure 2555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGACTTGGAGAGCATAGAGTGTGTTTCATCCTCAGATGGTCTTGATGAGGATGAGATCCATCAACACCTTCACAACCCACAACATCCTTCTCATCAACACCACCATGATTTTTCTTCTTCCAAGCCCAGAAATAATGTTACTAACACCGCCGGAATTCCGGGGCCCACCGCCATTGCTCCGGCCACCAGCGTTCATGAGTTGCTGGAATGTCCGGTGTGTACGAATTCCATGTACCCACCGATTCATCAGTGTCACAATGGACACACACTGTGTTCTACCTGTAAAACAAGGGTCCACAATCGCTGCCCCACTTGTAGGCAGGAGCTTGGAGATATTAGGTGTTTAGCATTGGAGAAGTATTATTCCTTGGGATGCCCGGAGATATTTCCTTACTACAGCAAACTAAAGCATGAATCAGTGTGCAATTTCAGACCTTATAATTGCCCATATGCTGGATCGGAGTGCTCTGTTGTTGGGGATATCCCTTTCCTGGTTGCCCATCTTAGAGATGATCACAAAGTAGACATGCACACAGGATGCACGTTCAACCATCGCTATGTAAAGTCAAATCCCCGGGAAGTAGAGAATGCCACTTGGATGCTTACAGTCTTCCATTGTTTTGGTCAATACTTCTGCCTCCATTTTGAAGCCTTCCAGCTTGGCATGGCTCCTGTTTATATGGCTTTTCTACGTTTTATGGGTGATGAGAATGAGGCACGGAACTACAGCTACAGCCTCGAGGTTGGAGCAAATGGCAGGAAACTCATATGGGAGGGCACCCCAAGAAGTGTCCGTGATAGCCACCGGAAGGTAAGGGATAGCCATGACGGTCTCATTATTCAACGAAACATGGCTTTATTTTTCTCTGGAGGAGATAGGAAGGAGCTTAAGCTGAGAGTTACCGGGAGGATATGGAAGGAACAGCAAAATCCAGATGCTGGAGTGTGCATACCAAACTTATGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

323

Amino Acids

36.77

Weight (kDa)

6.61

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	71 - 106	4.2e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	120 - 185	3.7e-24	Sina, zinc finger
Sina_TRAF	PF03145	205 - 302	1.5e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AbsI	CCTCGAGG	1 cut(s)	740
AccB1I	GGYRCC	1 cut(s)	779
AccB7I	CCANNNNNTGG	2 cut(s)	455, 941
AccI	GTMKAC	1 cut(s)	525
AciI	CCGC	2 cut(s)	150, 171
AclWI	GGATC	2 cut(s)	52, 466
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	156, 226
AdeI	CACNNNGTG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	223, 236
AfiI	CCNNNNNNNGG	5 cut(s)	318, 455, 493, 811, 941
AflII	CTTAAG	1 cut(s)	890
AgsI	TTSAA	3 cut(s)	550, 650, 845
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	6 cut(s)	328, 661, 732, 889, 895, 969
AluI	AGCT	6 cut(s)	328, 661, 732, 889, 895, 969
Alw21I	GWGCWC	1 cut(s)	470
Alw26I	GTCTC	1 cut(s)	839
AlwI	GGATC	2 cut(s)	52, 466
AlwNI	CAGNNNCTG	1 cut(s)	941
Ama87I	CYCGRG	2 cut(s)	576, 740
AoxI	GGCC	2 cut(s)	164, 183
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	2 cut(s)	156, 226
AspS9I	GGNCC	3 cut(s)	164, 165, 295
AsuC2I	CCSGG	5 cut(s)	162, 380, 577, 578, 907
AsuHPI	GGTGA	1 cut(s)	716
AvaI	CYCGRG	2 cut(s)	576, 740
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	2 cut(s)	168, 782
BanI	GGYRCC	1 cut(s)	779
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	604
Bbv12I	GWGCWC	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	4 cut(s)	32, 69, 510, 561
BciT130I	CCWGG	1 cut(s)	494
BclI	TGATCA	1 cut(s)	514
BcnI	CCSGG	5 cut(s)	162, 380, 577, 578, 907
BcoDI	GTCTC	1 cut(s)	839
BfmI	CTRYAG	3 cut(s)	397, 727, 733
BfrI	CTTAAG	1 cut(s)	890
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	6 cut(s)	162, 380, 494, 577, 578, 907
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	2 cut(s)	576, 740
BmgT120I	GGNCC	3 cut(s)	164, 165, 295
BmiI	GGNNCC	5 cut(s)	165, 166, 296, 672, 781
BmrFI	CCNGG	6 cut(s)	162, 380, 494, 577, 578, 907
BmsI	GCATC	4 cut(s)	365, 530, 591, 928
BpiI	GAAGAC	1 cut(s)	604
BpmI	CTGGAG	2 cut(s)	891, 963
BpuMI	CCSGG	5 cut(s)	162, 380, 577, 578, 907
BsaI	GGTCTC	1 cut(s)	839
BsaJI	CCNNGG	4 cut(s)	161, 369, 575, 576
BsaWI	WCCGGW	2 cut(s)	214, 807
Bsc4I	CCNNNNNNNGG	5 cut(s)	318, 455, 493, 811, 941
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	4 cut(s)	161, 369, 575, 576
BseGI	GGATG	6 cut(s)	29, 58, 85, 380, 545, 606
BseLI	CCNNNNNNNGG	5 cut(s)	318, 455, 493, 811, 941
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	48, 887
BseRI	GAGGAG	1 cut(s)	888
BseSI	GKGCMC	2 cut(s)	168, 782
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	2 cut(s)	166, 185
BshNI	GGYRCC	1 cut(s)	779
BsiHKAI	GWGCWC	1 cut(s)	470
BsiHKCI	CYCGRG	2 cut(s)	576, 740
BsiSI	CCGG	8 cut(s)	153, 161, 182, 215, 380, 577, 808, 906
BslI	CCNNNNNNNGG	5 cut(s)	318, 455, 493, 811, 941
BsmAI	GTCTC	1 cut(s)	839
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	166, 185
Bso31I	GGTCTC	1 cut(s)	839
BsoBI	CYCGRG	2 cut(s)	576, 740
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	168, 470, 782
Bsp143I	GATC	3 cut(s)	57, 458, 514
BspACI	CCGC	2 cut(s)	150, 171
BspANI	GGCC	2 cut(s)	166, 185
BspCNI	CTCAG	2 cut(s)	47, 888
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	5 cut(s)	165, 166, 296, 672, 781
BspPI	GGATC	2 cut(s)	52, 466
BspT107I	GGYRCC	1 cut(s)	779
BspTI	CTTAAG	1 cut(s)	890
BspTNI	GGTCTC	1 cut(s)	839
BsrDI	GCAATG	1 cut(s)	174
BssECI	CCNNGG	4 cut(s)	161, 369, 575, 576
BssMI	GATC	3 cut(s)	57, 458, 514
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	3 cut(s)	273, 610, 833
BstAFI	CTTAAG	1 cut(s)	890
BstDEI	CTNAG	3 cut(s)	34, 506, 896
BstF5I	GGATG	6 cut(s)	29, 58, 85, 380, 545, 606
BstKTI	GATC	3 cut(s)	60, 461, 517
BstMAI	GTCTC	1 cut(s)	839
BstMBI	GATC	3 cut(s)	57, 458, 514
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	6 cut(s)	160, 378, 492, 575, 576, 905
BstSFI	CTRYAG	3 cut(s)	397, 727, 733
BstSLI	GKGCMC	2 cut(s)	168, 782
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	604
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	166, 185
BtgZI	GCGATG	1 cut(s)	539
BtsCI	GGATG	6 cut(s)	29, 58, 85, 380, 545, 606
BtsIMutI	CAGTG	3 cut(s)	257, 269, 426
CaiI	CAGNNNCTG	1 cut(s)	941
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	164, 165, 295
Cfr9I	CCCGGG	1 cut(s)	576
Csp6I	GTAC	2 cut(s)	222, 235
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	8 cut(s)	107, 197, 232, 413, 529, 667, 827, 853
CviQI	GTAC	2 cut(s)	222, 235
DdeI	CTNAG	3 cut(s)	34, 506, 896
DpnI	GATC	3 cut(s)	59, 460, 516
DpnII	GATC	3 cut(s)	57, 458, 514
DraIII	CACNNNGTG	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	839
Eco32I	GATATC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	295
Eco88I	CYCGRG	2 cut(s)	576, 740
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRI	GAATTC	2 cut(s)	156, 226
EcoRII	CCWGG	1 cut(s)	492
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	8 cut(s)	110, 200, 235, 416, 532, 670, 830, 856
FatI	CATG	8 cut(s)	106, 196, 231, 412, 528, 666, 826, 852
FauNDI	CATATG	2 cut(s)	451, 770
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	6 cut(s)	16, 65, 72, 387, 552, 613
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	307
GsuI	CTGGAG	2 cut(s)	891, 963
HaeIII	GGCC	2 cut(s)	166, 185
HapII	CCGG	8 cut(s)	153, 161, 182, 215, 380, 577, 808, 906
Hin1II	CATG	8 cut(s)	110, 200, 235, 416, 532, 670, 830, 856
HinfI	GANTC	2 cut(s)	244, 416
HpaII	CCGG	8 cut(s)	153, 161, 182, 215, 380, 577, 808, 906
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	3 cut(s)	222, 298, 526
Hpy188I	TCNGA	3 cut(s)	37, 434, 463
Hpy188III	TCNNGA	4 cut(s)	44, 197, 870, 935
Hpy8I	GTNNAC	3 cut(s)	222, 298, 526
HpyAV	CCTTC	6 cut(s)	80, 99, 664, 805, 877, 913
HpyCH4III	ACNGT	3 cut(s)	273, 610, 833
HpyCH4IV	ACGT	2 cut(s)	545, 694
HpyCH4V	TGCA	4 cut(s)	426, 532, 543, 951
HpyF3I	CTNAG	3 cut(s)	34, 506, 896
HpySE526I	ACGT	2 cut(s)	545, 694
Hsp92II	CATG	8 cut(s)	110, 200, 235, 416, 532, 670, 830, 856
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	57, 458, 514
LmnI	GCTCC	5 cut(s)	184, 325, 676, 749, 886
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	4 cut(s)	365, 530, 591, 928
MaeII	ACGT	2 cut(s)	545, 694
MaeIII	GTNAC	3 cut(s)	139, 254, 901
MalI	GATC	3 cut(s)	59, 460, 516
MboI	GATC	3 cut(s)	57, 458, 514
MboII	GAAGA	3 cut(s)	108, 111, 604
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	3 cut(s)	168, 470, 782
MluCI	AATT	4 cut(s)	156, 226, 427, 442
MmeI	TCCRAC	1 cut(s)	727
MnlI	CCTC	9 cut(s)	43, 43, 650, 709, 736, 749, 769, 866, 903
MseI	TTAA	1 cut(s)	891
MslI	CAYNNNNRTG	3 cut(s)	105, 558, 599
MspCI	CTTAAG	1 cut(s)	890
MspI	CCGG	8 cut(s)	153, 161, 182, 215, 380, 577, 808, 906
MspR9I	CCNGG	6 cut(s)	162, 380, 494, 577, 578, 907
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	494
NciI	CCSGG	5 cut(s)	162, 380, 577, 578, 907
NdeI	CATATG	2 cut(s)	451, 770
NdeII	GATC	3 cut(s)	57, 458, 514
NlaIII	CATG	8 cut(s)	110, 200, 235, 416, 532, 670, 830, 856
NlaIV	GGNNCC	5 cut(s)	165, 166, 296, 672, 781
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	740
PagI	TCATGA	1 cut(s)	196
PctI	GAATGC	1 cut(s)	595
PfeI	GAWTC	2 cut(s)	244, 416
PflMI	CCANNNNNTGG	2 cut(s)	455, 941
PkrI	GCNGC	1 cut(s)	308
PsiI	TTATAA	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	5 cut(s)	165, 166, 296, 672, 781
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	164, 165, 295
PspXI	VCTCGAGB	1 cut(s)	740
PsrI	GAACNNNNNNTAC	2 cut(s)	716, 748
PstNI	CAGNNNCTG	1 cut(s)	941
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	223, 236
RsaNI	GTAC	2 cut(s)	222, 235
RseI	CAYNNNNRTG	3 cut(s)	105, 558, 599
SaqAI	TTAA	1 cut(s)	891
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	3 cut(s)	57, 458, 514
Sau96I	GGNCC	3 cut(s)	164, 165, 295
ScrFI	CCNGG	6 cut(s)	162, 380, 494, 577, 578, 907
SduI	GDGCHC	3 cut(s)	168, 470, 782
SfaNI	GCATC	4 cut(s)	365, 530, 591, 928
SfcI	CTRYAG	3 cut(s)	397, 727, 733
Sfr274I	CTCGAG	1 cut(s)	740
SinI	GGWCC	1 cut(s)	295
SlaI	CTCGAG	1 cut(s)	740
SmaI	CCCGGG	1 cut(s)	578
SmiMI	CAYNNNNRTG	3 cut(s)	105, 558, 599
SmlI	CTYRAG	2 cut(s)	740, 890
SmoI	CTYRAG	2 cut(s)	740, 890
Sse9I	AATT	4 cut(s)	156, 226, 427, 442
SsiI	CCGC	2 cut(s)	150, 171
StyD4I	CCNGG	6 cut(s)	160, 378, 492, 575, 576, 905
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	273, 610, 833
TaiI	ACGT	2 cut(s)	548, 697
TaqI	TCGA	1 cut(s)	741
TasI	AATT	4 cut(s)	156, 226, 427, 442
TfiI	GAWTC	2 cut(s)	244, 416
Tru1I	TTAA	1 cut(s)	891
Tru9I	TTAA	1 cut(s)	891
TscAI	CASTG	3 cut(s)	257, 276, 426
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	18, 185, 236, 429
TspGWI	ACGGA	2 cut(s)	736, 785
TspMI	CCCGGG	1 cut(s)	576
TspRI	CASTG	3 cut(s)	257, 276, 426
Van91I	CCANNNNNTGG	2 cut(s)	455, 941
Vha464I	CTTAAG	1 cut(s)	890
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	2 cut(s)	156, 226
XceI	RCATGY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	740
XmaI	CCCGGG	1 cut(s)	576
XmiI	GTMKAC	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.