Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8022042.1

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 262

Gene Structure 262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8022042.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atggacttggagagcatagagtgtgtttcatcctcagatggtcttgatgaggatgagatccatcaacaccttcacaacccacaacatccttctcatcaacaccaccatgatttttcttcttccaagcccagaaataatgttactaacaccgccggaattccggggcccaccgccattgctccggccaccagcgttcatgagttgctggaatgtccggtgtgtacgaattccatgtacccaccgattcatcaggta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

85

Amino Acids

9.32

Weight (kDa)

5.35

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	150, 171
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	156, 226
AfaI	GTAC	2 cut(s)	223, 236
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	2 cut(s)	164, 183
ApaI	GGGCCC	1 cut(s)	168
ApoI	RAATTY	2 cut(s)	156, 226
AspS9I	GGNCC	2 cut(s)	164, 165
AsuC2I	CCSGG	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	168
BccI	CCATC	2 cut(s)	32, 69
BcnI	CCSGG	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	164, 165
BmiI	GGNNCC	2 cut(s)	165, 166
BmrFI	CCNGG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	3 cut(s)	29, 58, 85
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	168
BshFI	GGCC	2 cut(s)	166, 185
BsiSI	CCGG	4 cut(s)	153, 161, 182, 215
BsnI	GGCC	2 cut(s)	166, 185
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	2 cut(s)	150, 171
BspANI	GGCC	2 cut(s)	166, 185
BspCNI	CTCAG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	165, 166
BspPI	GGATC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	34
BstF5I	GGATG	3 cut(s)	29, 58, 85
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	166, 185
BtsCI	GGATG	3 cut(s)	29, 58, 85
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	164, 165
Csp6I	GTAC	2 cut(s)	222, 235
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	3 cut(s)	107, 197, 232
CviJI	RGCY	3 cut(s)	127, 166, 185
CviKI_1	RGCY	3 cut(s)	127, 166, 185
CviQI	GTAC	2 cut(s)	222, 235
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRI	GAATTC	2 cut(s)	156, 226
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	3 cut(s)	110, 200, 235
FaiI	YATR	4 cut(s)	17, 108, 198, 233
FatI	CATG	3 cut(s)	106, 196, 231
FokI	GGATG	3 cut(s)	16, 65, 72
FriOI	GRGCYC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	166, 185
HapII	CCGG	4 cut(s)	153, 161, 182, 215
Hin1II	CATG	3 cut(s)	110, 200, 235
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	4 cut(s)	153, 161, 182, 215
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	2 cut(s)	44, 197
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	80, 99
HpyF3I	CTNAG	1 cut(s)	34
Hsp92II	CATG	3 cut(s)	110, 200, 235
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	8 cut(s)	142, 166, 174, 191, 195, 202, 228, 236
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	2 cut(s)	108, 111
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	2 cut(s)	156, 226
MnlI	CCTC	2 cut(s)	43, 43
MslI	CAYNNNNRTG	1 cut(s)	105
MspI	CCGG	4 cut(s)	153, 161, 182, 215
MspR9I	CCNGG	1 cut(s)	162
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	3 cut(s)	110, 200, 235
NlaIV	GGNNCC	2 cut(s)	165, 166
PagI	TCATGA	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	165, 166
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	164, 165
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	223, 236
RsaNI	GTAC	2 cut(s)	222, 235
RseI	CAYNNNNRTG	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	2 cut(s)	164, 165
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	2 cut(s)	72, 255
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	2 cut(s)	156, 226
SsiI	CCGC	2 cut(s)	150, 171
StyD4I	CCNGG	1 cut(s)	160
TasI	AATT	2 cut(s)	156, 226
TfiI	GAWTC	1 cut(s)	244
TspDTI	ATGAA	3 cut(s)	18, 185, 236
XapI	RAATTY	2 cut(s)	156, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.