Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Forward (+)

20321216 .. 20322910

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGACTTGGAAAGCATCGAGTGTGTGTCGTCCTCAGATGGACTCGATGAGGACGAGATCCATCCCCACCACAACACTCTGCACCCGCATCCTCATCCTCATCAGCACCACCATGAATTTTCCAAGCCCAGAAGCAATGTCACCACCAACGTCACCATCAACGGGCCCACCGCCATTGCTCCCGCCACCAGCGTCCACGAGCTGCTCGAATGCCCCGTCTGCACCAATTCCATGTACCCGCCAATCCATCAGTGCCACAATGGCCACACACTGTGTTCCACTTGTAAATCGAGGGTACACAATCGCTGCCCCACTTGTAGACAGGAGCTTGGAGATATTAGATGTTTAGCGCTGGAGAAGGTGGCCGAGTCACTTGAGTTACCCTGCAAGTATTACGCCTTGGGATGCCCAGAGATATTCCCGTACTACAGCAAACTAAAGCATGAATCGGTGTGCAACTTCAGACCGTACAATTGCCCTTATGCTGGATCGGAGTGCTCTGTTGTCGGAGACATCCCTTTCCTGGTTGCCCATCTAAGGGATCGATCACAAGGTGGACATGCACACAGGATACACATTCAACCATCGTTATGTGAAGTCAAATCCGCGGGAAGTAGAGAACGCCACATGGATGCTAACAGTCTTCCATTGTTTTGGTCAATACTTCTGCCTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

227

Amino Acids

25.35

Weight (kDa)

6.38

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	319
AccII	CGCG	1 cut(s)	608
AciI	CCGC	6 cut(s)	86, 171, 183, 239, 606, 608
AclWI	GGATC	3 cut(s)	52, 496, 549
AcoI	YGGCCR	2 cut(s)	262, 363
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	445
AdeI	CACNNNGTG	2 cut(s)	273, 554
AfaI	GTAC	4 cut(s)	236, 297, 425, 470
AfeI	AGCGCT	1 cut(s)	351
AfiI	CCNNNNNNNGG	5 cut(s)	162, 485, 523, 537, 538
AgsI	TTSAA	1 cut(s)	581
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	2 cut(s)	202, 328
AluI	AGCT	2 cut(s)	202, 328
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	504
AlwI	GGATC	3 cut(s)	52, 496, 549
Aor51HI	AGCGCT	1 cut(s)	351
AoxI	GGCC	3 cut(s)	164, 262, 363
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	202, 306
ApoI	RAATTY	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	164, 165
AsuHPI	GGTGA	2 cut(s)	133, 145
BaeGI	GKGCMC	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	189, 293
BccI	CCATC	6 cut(s)	32, 69, 164, 255, 540, 592
BciT130I	CCWGG	1 cut(s)	524
BciVI	GTATCC	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	427
BfoI	RGCGCY	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	564
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	2 cut(s)	203, 307
BlsI	GCNGC	2 cut(s)	204, 308
Bme1390I	CCNGG	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	164, 165
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	4 cut(s)	24, 97, 395, 622
BpiI	GAAGAC	1 cut(s)	635
BpmI	CTGGAG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	399, 606
Bsc4I	CCNNNNNNNGG	5 cut(s)	162, 485, 523, 537, 538
Bse3DI	GCAATG	2 cut(s)	142, 174
BseBI	CCWGG	1 cut(s)	524
BseCI	ATCGAT	1 cut(s)	544
BseDI	CCNNGG	2 cut(s)	399, 606
BseGI	GGATG	6 cut(s)	61, 88, 94, 410, 513, 637
BseLI	CCNNNNNNNGG	5 cut(s)	162, 485, 523, 537, 538
BseMI	GCAATG	2 cut(s)	142, 174
BseMII	CTCAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	189, 293
BsgI	GTGCAG	2 cut(s)	65, 205
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	3 cut(s)	166, 264, 365
BshVI	ATCGAT	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	500
BslI	CCNNNNNNNGG	5 cut(s)	162, 485, 523, 537, 538
BsmAI	GTCTC	1 cut(s)	504
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	166, 264, 365
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	168, 500
Bsp143I	GATC	4 cut(s)	57, 488, 541, 545
BspACI	CCGC	6 cut(s)	86, 171, 183, 239, 606, 608
BspANI	GGCC	3 cut(s)	166, 264, 365
BspCNI	CTCAG	1 cut(s)	47
BspDI	ATCGAT	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	3 cut(s)	52, 496, 549
BsrDI	GCAATG	2 cut(s)	142, 174
BssECI	CCNNGG	2 cut(s)	399, 606
BssMI	GATC	4 cut(s)	57, 488, 541, 545
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	3 cut(s)	273, 468, 641
BstDEI	CTNAG	2 cut(s)	34, 536
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	6 cut(s)	61, 88, 94, 410, 513, 637
BstFNI	CGCG	1 cut(s)	608
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	4 cut(s)	60, 491, 544, 548
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	4 cut(s)	57, 488, 541, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 261
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	1 cut(s)	427
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	2 cut(s)	189, 293
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	57
Bsu15I	ATCGAT	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	564
BsuRI	GGCC	3 cut(s)	166, 264, 365
BsuTUI	ATCGAT	1 cut(s)	544
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	6 cut(s)	61, 88, 94, 410, 513, 637
BtsIMutI	CAGTG	2 cut(s)	257, 269
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	164, 165
Cfr42I	CCGCGG	1 cut(s)	609
ClaI	ATCGAT	1 cut(s)	544
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	4 cut(s)	235, 296, 424, 469
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	5 cut(s)	113, 232, 443, 560, 628
CviJI	RGCY	6 cut(s)	127, 166, 202, 264, 328, 365
CviKI_1	RGCY	6 cut(s)	127, 166, 202, 264, 328, 365
CviQI	GTAC	4 cut(s)	235, 296, 424, 469
DdeI	CTNAG	2 cut(s)	34, 536
DpnI	GATC	4 cut(s)	59, 490, 543, 547
DpnII	GATC	4 cut(s)	57, 488, 541, 545
DraIII	CACNNNGTG	2 cut(s)	273, 554
EaeI	YGGCCR	2 cut(s)	262, 363
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	168
Eco47III	AGCGCT	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	5 cut(s)	116, 235, 446, 563, 631
FaiI	YATR	7 cut(s)	114, 233, 444, 483, 561, 592, 629
FatI	CATG	5 cut(s)	112, 231, 442, 559, 627
FauI	CCCGC	4 cut(s)	93, 190, 246, 601
FblI	GTMKAC	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	203, 307
FokI	GGATG	6 cut(s)	48, 75, 81, 417, 500, 644
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	203, 307
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	2 cut(s)	203, 307
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	3 cut(s)	166, 264, 365
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	5 cut(s)	116, 235, 446, 563, 631
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	3 cut(s)	42, 368, 446
HphI	GGTGA	2 cut(s)	133, 145
Hpy166II	GTNNAC	4 cut(s)	196, 298, 320, 557
Hpy188I	TCNGA	4 cut(s)	37, 464, 493, 509
Hpy8I	GTNNAC	4 cut(s)	196, 298, 320, 557
HpyAV	CCTTC	2 cut(s)	352, 681
HpyCH4III	ACNGT	3 cut(s)	273, 468, 641
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	82, 222, 387, 456, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 261
HpyF3I	CTNAG	2 cut(s)	34, 536
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	5 cut(s)	116, 235, 446, 563, 631
HspAI	GCGC	1 cut(s)	350
KspI	CCGCGG	1 cut(s)	609
Kzo9I	GATC	4 cut(s)	57, 488, 541, 545
LmnI	GCTCC	2 cut(s)	184, 325
Lsp1109I	GCAGC	2 cut(s)	189, 293
LweI	GCATC	4 cut(s)	24, 97, 395, 622
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	4 cut(s)	139, 151, 369, 378
MalI	GATC	4 cut(s)	59, 490, 543, 547
MboI	GATC	4 cut(s)	57, 488, 541, 545
MboII	GAAGA	1 cut(s)	635
MfeI	CAATTG	1 cut(s)	472
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	168, 500
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	3 cut(s)	116, 226, 472
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	2 cut(s)	36, 377
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	5 cut(s)	43, 43, 102, 108, 285
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MslI	CAYNNNNRTG	3 cut(s)	111, 589, 630
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	608
MspR9I	CCNGG	1 cut(s)	524
MunI	CAATTG	1 cut(s)	472
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	2 cut(s)	219, 261
NdeII	GATC	4 cut(s)	57, 488, 541, 545
NlaIII	CATG	5 cut(s)	116, 235, 446, 563, 631
NlaIV	GGNNCC	1 cut(s)	166
NmeAIII	GCCGAG	1 cut(s)	391
NmuCI	GTSAC	3 cut(s)	139, 151, 369
NspI	RCATGY	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 204, 213
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	204, 308
PleI	GAGTC	2 cut(s)	36, 376
PpsI	GAGTC	2 cut(s)	36, 376
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	166
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	164, 165
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	4 cut(s)	236, 297, 425, 470
RsaNI	GTAC	4 cut(s)	235, 296, 424, 469
RseI	CAYNNNNRTG	3 cut(s)	111, 589, 630
SacII	CCGCGG	1 cut(s)	609
SatI	GCNGC	2 cut(s)	203, 307
Sau3AI	GATC	4 cut(s)	57, 488, 541, 545
Sau96I	GGNCC	2 cut(s)	164, 165
SchI	GAGTC	2 cut(s)	36, 377
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	2 cut(s)	168, 500
SetI	ASST	5 cut(s)	153, 204, 330, 363, 556
SfaNI	GCATC	4 cut(s)	24, 97, 395, 622
SfcI	CTRYAG	1 cut(s)	427
Sfr303I	CCGCGG	1 cut(s)	609
SgrBI	CCGCGG	1 cut(s)	609
SmiMI	CAYNNNNRTG	3 cut(s)	111, 589, 630
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	116, 226, 472
SsiI	CCGC	6 cut(s)	86, 171, 183, 239, 606, 608
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	3 cut(s)	273, 468, 641
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	5 cut(s)	18, 45, 207, 290, 544
TasI	AATT	3 cut(s)	116, 226, 472
TfiI	GAWTC	1 cut(s)	446
TscAI	CASTG	2 cut(s)	257, 276
TseFI	GTSAC	3 cut(s)	139, 151, 369
TseI	GCWGC	2 cut(s)	202, 306
Tsp45I	GTSAC	3 cut(s)	139, 151, 369
TspDTI	ATGAA	3 cut(s)	129, 459, 663
TspRI	CASTG	2 cut(s)	257, 276
XapI	RAATTY	1 cut(s)	116
XceI	RCATGY	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.