E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G53360 |
| fragaria_vesca | FvH4_7g31590 FvH4_7g31590 |
| malus_domestica | MD01G1218700.v1.1 MD07G1288600.v1.1 |
| prunus_persica | Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 |
| pyrus_communis | pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130 |
| rosa_chinensis | RchiOBHm_Chr1g0380621 |
| rosa_laevigata | RLG00000026281 |
| rosa_multiflora | Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012 |
| rosa_roxburghii | Rroxscaffold_4G00279130 |
| rosa_rugosa | Rorug01G0423000 |
| rosa_samantha | Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700 |
| rosa_wichuraiana | Rw1G038930 Rw7G019960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 158 |
| AccB1I | GGYRCC | 1 cut(s) | 197 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 359 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 229, 359 |
| AflII | CTTAAG | 1 cut(s) | 308 |
| AgsI | TTSAA | 2 cut(s) | 68, 263 |
| AluBI | AGCT | 5 cut(s) | 79, 150, 307, 313, 387 |
| AluI | AGCT | 5 cut(s) | 79, 150, 307, 313, 387 |
| Alw26I | GTCTC | 1 cut(s) | 257 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 359 |
| Ama87I | CYCGRG | 1 cut(s) | 158 |
| AsuC2I | CCSGG | 1 cut(s) | 325 |
| AsuHPI | GGTGA | 1 cut(s) | 134 |
| AvaI | CYCGRG | 1 cut(s) | 158 |
| BaeGI | GKGCMC | 1 cut(s) | 200 |
| BanI | GGYRCC | 1 cut(s) | 197 |
| BbsI | GAAGAC | 1 cut(s) | 22 |
| BcnI | CCSGG | 1 cut(s) | 325 |
| BcoDI | GTCTC | 1 cut(s) | 257 |
| BfmI | CTRYAG | 2 cut(s) | 145, 151 |
| BfrI | CTTAAG | 1 cut(s) | 308 |
| Bme1390I | CCNGG | 1 cut(s) | 325 |
| BmeT110I | CYCGRG | 1 cut(s) | 158 |
| BmiI | GGNNCC | 2 cut(s) | 90, 199 |
| BmrFI | CCNGG | 1 cut(s) | 325 |
| BmsI | GCATC | 1 cut(s) | 346 |
| BpiI | GAAGAC | 1 cut(s) | 22 |
| BpmI | CTGGAG | 2 cut(s) | 309, 381 |
| BpuMI | CCSGG | 1 cut(s) | 325 |
| BsaI | GGTCTC | 1 cut(s) | 257 |
| BsaWI | WCCGGW | 1 cut(s) | 225 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 229, 359 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 229, 359 |
| BseMII | CTCAG | 1 cut(s) | 305 |
| BseRI | GAGGAG | 1 cut(s) | 306 |
| BseSI | GKGCMC | 1 cut(s) | 200 |
| BshNI | GGYRCC | 1 cut(s) | 197 |
| BsiHKCI | CYCGRG | 1 cut(s) | 158 |
| BsiSI | CCGG | 2 cut(s) | 226, 324 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 229, 359 |
| BsmAI | GTCTC | 1 cut(s) | 257 |
| BsmI | GAATGC | 1 cut(s) | 15 |
| Bso31I | GGTCTC | 1 cut(s) | 257 |
| BsoBI | CYCGRG | 1 cut(s) | 158 |
| Bsp1286I | GDGCHC | 1 cut(s) | 200 |
| BspCNI | CTCAG | 1 cut(s) | 306 |
| BspLI | GGNNCC | 2 cut(s) | 90, 199 |
| BspT107I | GGYRCC | 1 cut(s) | 197 |
| BspTI | CTTAAG | 1 cut(s) | 308 |
| BspTNI | GGTCTC | 1 cut(s) | 257 |
| Bst4CI | ACNGT | 1 cut(s) | 251 |
| BstAFI | CTTAAG | 1 cut(s) | 308 |
| BstDEI | CTNAG | 1 cut(s) | 314 |
| BstMAI | GTCTC | 1 cut(s) | 257 |
| BstSCI | CCNGG | 1 cut(s) | 323 |
| BstSFI | CTRYAG | 2 cut(s) | 145, 151 |
| BstSLI | GKGCMC | 1 cut(s) | 200 |
| BstV2I | GAAGAC | 1 cut(s) | 22 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 41 |
| CaiI | CAGNNNCTG | 1 cut(s) | 359 |
| CviAII | CATG | 3 cut(s) | 85, 245, 271 |
| DdeI | CTNAG | 1 cut(s) | 314 |
| Eco31I | GGTCTC | 1 cut(s) | 257 |
| Eco88I | CYCGRG | 1 cut(s) | 158 |
| FaeI | CATG | 3 cut(s) | 88, 248, 274 |
| FatI | CATG | 3 cut(s) | 84, 244, 270 |
| FauNDI | CATATG | 1 cut(s) | 188 |
| GsuI | CTGGAG | 2 cut(s) | 309, 381 |
| HapII | CCGG | 2 cut(s) | 226, 324 |
| Hin1II | CATG | 3 cut(s) | 88, 248, 274 |
| HpaII | CCGG | 2 cut(s) | 226, 324 |
| HphI | GGTGA | 1 cut(s) | 134 |
| Hpy188III | TCNNGA | 2 cut(s) | 288, 353 |
| HpyAV | CCTTC | 4 cut(s) | 82, 223, 295, 331 |
| HpyCH4III | ACNGT | 1 cut(s) | 251 |
| HpyCH4IV | ACGT | 1 cut(s) | 112 |
| HpyCH4V | TGCA | 2 cut(s) | 15, 369 |
| HpyF3I | CTNAG | 1 cut(s) | 314 |
| HpySE526I | ACGT | 1 cut(s) | 112 |
| Hsp92II | CATG | 3 cut(s) | 88, 248, 274 |
| LmnI | GCTCC | 3 cut(s) | 94, 167, 304 |
| LweI | GCATC | 1 cut(s) | 346 |
| MaeII | ACGT | 1 cut(s) | 112 |
| MaeIII | GTNAC | 1 cut(s) | 319 |
| MboII | GAAGA | 1 cut(s) | 22 |
| MhlI | GDGCHC | 1 cut(s) | 200 |
| MmeI | TCCRAC | 1 cut(s) | 145 |
| MnlI | CCTC | 7 cut(s) | 68, 127, 154, 167, 187, 284, 321 |
| MseI | TTAA | 1 cut(s) | 309 |
| MspCI | CTTAAG | 1 cut(s) | 308 |
| MspI | CCGG | 2 cut(s) | 226, 324 |
| MspR9I | CCNGG | 1 cut(s) | 325 |
| Mva1269I | GAATGC | 1 cut(s) | 15 |
| NciI | CCSGG | 1 cut(s) | 325 |
| NdeI | CATATG | 1 cut(s) | 188 |
| NlaIII | CATG | 3 cut(s) | 88, 248, 274 |
| NlaIV | GGNNCC | 2 cut(s) | 90, 199 |
| PaeR7I | CTCGAG | 1 cut(s) | 158 |
| PctI | GAATGC | 1 cut(s) | 15 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 359 |
| PspN4I | GGNNCC | 2 cut(s) | 90, 199 |
| PspXI | VCTCGAGB | 1 cut(s) | 158 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 134, 166 |
| PstNI | CAGNNNCTG | 1 cut(s) | 359 |
| SaqAI | TTAA | 1 cut(s) | 309 |
| ScrFI | CCNGG | 1 cut(s) | 325 |
| SduI | GDGCHC | 1 cut(s) | 200 |
| SetI | ASST | 9 cut(s) | 30, 81, 115, 152, 165, 234, 309, 315, 389 |
| SfaNI | GCATC | 1 cut(s) | 346 |
| SfcI | CTRYAG | 2 cut(s) | 145, 151 |
| Sfr274I | CTCGAG | 1 cut(s) | 158 |
| SlaI | CTCGAG | 1 cut(s) | 158 |
| SmlI | CTYRAG | 2 cut(s) | 158, 308 |
| SmoI | CTYRAG | 2 cut(s) | 158, 308 |
| StyD4I | CCNGG | 1 cut(s) | 323 |
| TaaI | ACNGT | 1 cut(s) | 251 |
| TaiI | ACGT | 1 cut(s) | 115 |
| TaqI | TCGA | 1 cut(s) | 159 |
| Tru1I | TTAA | 1 cut(s) | 309 |
| Tru9I | TTAA | 1 cut(s) | 309 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 2 cut(s) | 154, 203 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 359 |
| Vha464I | CTTAAG | 1 cut(s) | 308 |
| XhoI | CTCGAG | 1 cut(s) | 158 |