Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Forward (+)

26222160 .. 26224154

Gene Structure 1995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGACTTGGAAAGCATCGAGTGTGTGTCGTCCTCAGATGGACTTGATGAGGACGAGATCCATCCCCACCATAACACTCTGCACCCGCATTCTCACCCTCATCAGCATCACCATGAATTTTCCAAGCCCAGAAACAATGTCACTACCAACGCTACCATTGCCGGCCCCACCTCCATCGCTCCCGCCACCAGCGTCCACGAGCTGCTCGAATGCCCTGTCTGCACCAATTCCATGTACCCGCCAATCCATCAGTGCCACAATGGCCACACACTGTGTTCCACTTGTAAGTCGAGGGTGCACAACCGTTGCCCAACTTGTAGACAGGAGCTTGGAGATATTAGGTGTTTAGCTCTGGAGAAGGTGGCTGAGTCACTTGAGTTACCCTGCAAGTATTACTCCTTGGGATGCCCAGAGATATTCCCGTATTACAGCAAACTAAAGCATGAATCAGTGTGCAACTTCAGACCGTATAATTGCCCTTATGCTGGATCGGAGTGCTCTGTTGTTGGAGATATCCCTTTCCTGGTTACCCATCTAAGGGATCGATCACAAGGTGGACATGCACACAGGATGCACATTCAACCATCGCTATGTGAAGTCAAATCCTCGGGAAGTAGAGAATGCCACTTGGATGCTAACAGTTTTCCATTGTTTTGGTCAATACTTCTGCCTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

227

Amino Acids

25.36

Weight (kDa)

6.29

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	319
AciI	CCGC	3 cut(s)	86, 183, 239
AclWI	GGATC	3 cut(s)	52, 496, 549
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	445
AdeI	CACNNNGTG	2 cut(s)	273, 554
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	4 cut(s)	485, 523, 537, 538
AgsI	TTSAA	1 cut(s)	581
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	3 cut(s)	202, 328, 350
AluI	AGCT	3 cut(s)	202, 328, 350
Alw21I	GWGCWC	2 cut(s)	300, 500
Alw44I	GTGCAC	1 cut(s)	296
AlwI	GGATC	3 cut(s)	52, 496, 549
Ama87I	CYCGRG	1 cut(s)	607
AoxI	GGCC	2 cut(s)	163, 262
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	86, 101
AvaI	CYCGRG	1 cut(s)	607
BaeGI	GKGCMC	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	264
BauI	CACGAG	1 cut(s)	197
Bbv12I	GWGCWC	2 cut(s)	300, 500
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	6 cut(s)	32, 69, 182, 255, 540, 592
BciT130I	CCWGG	1 cut(s)	524
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	524
BmeT110I	CYCGRG	1 cut(s)	607
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	5 cut(s)	24, 115, 395, 561, 622
BpmI	CTGGAG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	399, 606
Bsc4I	CCNNNNNNNGG	4 cut(s)	485, 523, 537, 538
Bse118I	RCCGGY	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	524
BseCI	ATCGAT	1 cut(s)	544
BseDI	CCNNGG	2 cut(s)	399, 606
BseGI	GGATG	4 cut(s)	61, 410, 576, 637
BseLI	CCNNNNNNNGG	4 cut(s)	485, 523, 537, 538
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	48, 357
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	189
BsgI	GTGCAG	2 cut(s)	65, 205
BshFI	GGCC	2 cut(s)	165, 264
BshVI	ATCGAT	1 cut(s)	544
BsiHKAI	GWGCWC	2 cut(s)	300, 500
BsiHKCI	CYCGRG	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	4 cut(s)	485, 523, 537, 538
BsmI	GAATGC	3 cut(s)	88, 215, 626
BsnI	GGCC	2 cut(s)	165, 264
BsoBI	CYCGRG	1 cut(s)	607
Bsp1286I	GDGCHC	2 cut(s)	300, 500
Bsp143I	GATC	4 cut(s)	57, 488, 541, 545
BspACI	CCGC	3 cut(s)	86, 183, 239
BspANI	GGCC	2 cut(s)	165, 264
BspCNI	CTCAG	2 cut(s)	47, 358
BspDI	ATCGAT	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	3 cut(s)	52, 496, 549
BsrDI	GCAATG	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	399, 606
BssMI	GATC	4 cut(s)	57, 488, 541, 545
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	4 cut(s)	273, 305, 468, 641
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	34, 366, 536
BstEII	GGTNACC	1 cut(s)	526
BstF5I	GGATG	4 cut(s)	61, 410, 576, 637
BstKTI	GATC	4 cut(s)	60, 491, 544, 548
BstMBI	GATC	4 cut(s)	57, 488, 541, 545
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 219, 261
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	563
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	522
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	57
Bsu15I	ATCGAT	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	165, 264
BsuTUI	ATCGAT	1 cut(s)	544
BtgZI	GCGATG	2 cut(s)	160, 570
BtsCI	GGATG	4 cut(s)	61, 410, 576, 637
BtsIMutI	CAGTG	3 cut(s)	257, 269, 456
Cac8I	GCNNGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	164
ClaI	ATCGAT	1 cut(s)	544
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	4 cut(s)	113, 232, 443, 560
CviJI	RGCY	7 cut(s)	127, 165, 202, 264, 328, 350, 365
CviKI_1	RGCY	7 cut(s)	127, 165, 202, 264, 328, 350, 365
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	3 cut(s)	34, 366, 536
DpnI	GATC	4 cut(s)	59, 490, 543, 547
DpnII	GATC	4 cut(s)	57, 488, 541, 545
DraIII	CACNNNGTG	2 cut(s)	273, 554
EaeI	YGGCCR	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	399
Eco32I	GATATC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	445
Eco88I	CYCGRG	1 cut(s)	607
Eco91I	GGTNACC	1 cut(s)	526
EcoO65I	GGTNACC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	522
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	4 cut(s)	116, 235, 446, 563
FaiI	YATR	8 cut(s)	72, 114, 233, 444, 471, 483, 561, 592
FatI	CATG	4 cut(s)	112, 231, 442, 559
FauI	CCCGC	3 cut(s)	93, 190, 246
FblI	GTMKAC	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	4 cut(s)	48, 417, 583, 644
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	374
HaeIII	GGCC	2 cut(s)	165, 264
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	181
Hin1II	CATG	4 cut(s)	116, 235, 446, 563
HinfI	GANTC	2 cut(s)	368, 446
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	86, 101
Hpy166II	GTNNAC	4 cut(s)	196, 298, 320, 557
Hpy188I	TCNGA	3 cut(s)	37, 464, 493
Hpy188III	TCNNGA	2 cut(s)	353, 609
Hpy8I	GTNNAC	4 cut(s)	196, 298, 320, 557
HpyAV	CCTTC	2 cut(s)	352, 681
HpyCH4III	ACNGT	4 cut(s)	273, 305, 468, 641
HpyCH4V	TGCA	7 cut(s)	82, 222, 298, 387, 456, 563, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 219, 261
HpyF3I	CTNAG	3 cut(s)	34, 366, 536
Hsp92II	CATG	4 cut(s)	116, 235, 446, 563
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	57, 488, 541, 545
LmnI	GCTCC	2 cut(s)	184, 325
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	5 cut(s)	24, 115, 395, 561, 622
MaeIII	GTNAC	4 cut(s)	139, 369, 378, 526
MalI	GATC	4 cut(s)	59, 490, 543, 547
MboI	GATC	4 cut(s)	57, 488, 541, 545
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	300, 500
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	3 cut(s)	116, 226, 472
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	6 cut(s)	43, 43, 108, 181, 285, 616
Mox20I	TGGCCA	1 cut(s)	264
MroNI	GCCGGC	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	264
MslI	CAYNNNNRTG	3 cut(s)	111, 589, 630
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	524
Mva1269I	GAATGC	3 cut(s)	88, 215, 626
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	3 cut(s)	158, 219, 261
NaeI	GCCGGC	1 cut(s)	163
NdeII	GATC	4 cut(s)	57, 488, 541, 545
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	4 cut(s)	116, 235, 446, 563
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	139, 369
NspI	RCATGY	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	3 cut(s)	88, 215, 626
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	522
PspEI	GGTNACC	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	3 cut(s)	111, 589, 630
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	4 cut(s)	57, 488, 541, 545
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	2 cut(s)	300, 500
SetI	ASST	7 cut(s)	173, 204, 330, 344, 352, 363, 556
SfaNI	GCATC	5 cut(s)	24, 115, 395, 561, 622
SmiMI	CAYNNNNRTG	3 cut(s)	111, 589, 630
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	116, 226, 472
SsiI	CCGC	3 cut(s)	86, 183, 239
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	4 cut(s)	273, 305, 468, 641
TaqI	TCGA	4 cut(s)	18, 207, 290, 544
TasI	AATT	3 cut(s)	116, 226, 472
TfiI	GAWTC	1 cut(s)	446
TscAI	CASTG	3 cut(s)	257, 276, 456
TseFI	GTSAC	2 cut(s)	139, 369
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	2 cut(s)	139, 369
TspDTI	ATGAA	3 cut(s)	129, 459, 663
TspRI	CASTG	3 cut(s)	257, 276, 456
VneI	GTGCAC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	116
XceI	RCATGY	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.