Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Forward (+)

20322960 .. 20323232

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGTGATGAGAATGAGGCCCGGAACTACAGCTACAGCTTAGAGGTTGGAGCGAATGGCAGGAAACTCATATGGGAGGGGACACCACGAAGTGTCCGTGATAGCCACCGGAAAGTCAGGGATAGCCACGATGGTCTCATTATCCAACGAAACATGGCTCTATTCTTCTCCGGAGGCGACAGGAAGGAGCTGAAGCTGAGAGTTACCGGGAGGATATGGAAGGAACAGCAAAATCAAGATTCTGGGGTGTGCATACCAAACCTGTGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

91

Amino Acids

10.29

Weight (kDa)

9.14

Isoelectric Point (pI)

22.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_TRAF	PF03145	1 - 69	9.8e-23	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	92
AluBI	AGCT	5 cut(s)	33, 39, 190, 196, 270
AluI	AGCT	5 cut(s)	33, 39, 190, 196, 270
Alw26I	GTCTC	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	170
AoxI	GGCC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	2 cut(s)	22, 208
AsuHPI	GGTGA	1 cut(s)	17
BccI	CCATC	1 cut(s)	125
BcnI	CCSGG	2 cut(s)	22, 208
BcoDI	GTCTC	1 cut(s)	140
BfmI	CTRYAG	2 cut(s)	28, 34
Bme1390I	CCNGG	2 cut(s)	22, 208
BmgT120I	GGNCC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	22, 208
BpuMI	CCSGG	2 cut(s)	22, 208
BsaI	GGTCTC	1 cut(s)	140
BsaWI	WCCGGW	2 cut(s)	108, 170
BseAI	TCCGGA	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	20
BsiSI	CCGG	4 cut(s)	22, 109, 171, 207
BslFI	GGGAC	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	140
Bsp13I	TCCGGA	1 cut(s)	170
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	189
BspEI	TCCGGA	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	40, 197
BstMAI	GTCTC	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	20, 206
BstSFI	CTRYAG	2 cut(s)	28, 34
BsuRI	GGCC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	19
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	9 cut(s)	20, 33, 39, 105, 126, 158, 190, 196, 270
CviKI_1	RGCY	9 cut(s)	20, 33, 39, 105, 126, 158, 190, 196, 270
DdeI	CTNAG	2 cut(s)	40, 197
DraIII	CACNNNGTG	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	212
FaeI	CATG	1 cut(s)	157
FaiI	YATR	5 cut(s)	71, 73, 155, 217, 254
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	153
FauNDI	CATATG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	4 cut(s)	22, 109, 171, 207
Hin1II	CATG	1 cut(s)	157
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	4 cut(s)	22, 109, 171, 207
HphI	GGTGA	1 cut(s)	17
Hpy188III	TCNNGA	2 cut(s)	171, 236
HpyAV	CCTTC	2 cut(s)	178, 214
HpyCH4V	TGCA	1 cut(s)	252
HpyF3I	CTNAG	2 cut(s)	40, 197
Hsp92II	CATG	1 cut(s)	157
Kpn2I	TCCGGA	1 cut(s)	170
LmnI	GCTCC	2 cut(s)	50, 187
LpnPI	CCDG	8 cut(s)	35, 46, 103, 122, 166, 184, 220, 228
MaeIII	GTNAC	1 cut(s)	202
MboII	GAAGA	1 cut(s)	157
MmeI	TCCRAC	2 cut(s)	28, 169
MnlI	CCTC	5 cut(s)	10, 37, 70, 167, 204
MroI	TCCGGA	1 cut(s)	170
MspI	CCGG	4 cut(s)	22, 109, 171, 207
MspR9I	CCNGG	2 cut(s)	22, 208
NciI	CCSGG	2 cut(s)	22, 208
NdeI	CATATG	1 cut(s)	71
NlaIII	CATG	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	19
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
Sau96I	GGNCC	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	22, 208
SetI	ASST	7 cut(s)	35, 41, 48, 192, 198, 264, 272
SfcI	CTRYAG	2 cut(s)	28, 34
StyD4I	CCNGG	2 cut(s)	20, 206
TfiI	GAWTC	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.