Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Forward (+)

31083173 .. 31086177

Gene Structure 3005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1218700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGACTTGGAAAGCATCGAGTGTGTGTCGTCCTCAGATGGACTCGATGAGGACGAGATCCATCCCCACCACAACACTCTGCACCCGCATCCTCATCCTCATCAGCACCACCATGAATTTTCCAAGCCCAGAAGCAATGTCACCACCAACGCCACCATCAACGGGCCCACCGCCATTGCTCCCGCCACCAGCGTCCACGAGCTGCTCGAATGCCCCGTCTGCACCAATTCCATGTACCCGCCAATCCATCAGTGCCACAATGGCCACACACTCTGTTCCACTTGTAAATCGAGGGTACACAATCGCTGCCCCACTTGTAGACAGGAGCTTGGAGATATTAGGTGTTTAGCGCTGGAGAAGGTGGCCGAGTCACTTGAGTTACCCTGCAAGTATTACGCCTTGGGATGCCCAGAGATATTCCCGTACTACAGCAAACTAAAGCATGAATCGGTGTGCAACTTCAGACCGTACAATTGCCCTTATGCTGGATCGGAGTGCTCTGTTGTTGGAGACATCCCTTTCCTGGTTGCCCATCTAAGGGATGATCACAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGGGAAGTAGAGAACGCCACATGGATGCTAACAGTCTTCCATTGTTTTGGTCAATACTTCTGCCTACATTTTGAAGCCTTCCAGCTCGGCATGGCTCCTGTTTATATGGCATTCCTACGTTTTATGGGCGACGAGAATGAGGCCCGGAATTACAGCTACAGCTTAGAGGTTGGAGCGAATGGCAGGAAACTCATATGGGAGGGGACACCACGAAGTGTCCGTGATAGCCACCGGAAGGTCAGGGATAGCCACGATGGTCTCATTATCCAACGAAACATGGCTCTGTTCTTCTCCGGAGGCGACAGGAAGGAGCTGAAGCTGAGAGTTACCGGGAGGATATGGAAGGAACAGCAAAATCAAGATTCTGGGGTGTGCATACCAAACCTGTGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

334

Amino Acids

37.95

Weight (kDa)

6.55

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	71 - 106	2.4e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	120 - 195	3.9e-30	Sina, zinc finger
Sina_TRAF	PF03145	215 - 312	1.6e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	319
AccII	CGCG	1 cut(s)	607
AccIII	TCCGGA	1 cut(s)	899
AciI	CCGC	6 cut(s)	86, 171, 183, 239, 605, 607
AclWI	GGATC	2 cut(s)	52, 496
AcoI	YGGCCR	2 cut(s)	262, 363
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	2 cut(s)	445, 941
AdeI	CACNNNGTG	2 cut(s)	553, 821
AfaI	GTAC	4 cut(s)	236, 297, 425, 470
AfeI	AGCGCT	1 cut(s)	351
AfiI	CCNNNNNNNGG	6 cut(s)	162, 485, 523, 537, 538, 841
AgsI	TTSAA	2 cut(s)	580, 680
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	8 cut(s)	202, 328, 691, 762, 768, 919, 925, 999
AluI	AGCT	8 cut(s)	202, 328, 691, 762, 768, 919, 925, 999
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	2 cut(s)	504, 869
AlwI	GGATC	2 cut(s)	52, 496
Aor13HI	TCCGGA	1 cut(s)	899
Aor51HI	AGCGCT	1 cut(s)	351
AoxI	GGCC	4 cut(s)	164, 262, 363, 747
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	202, 306
ApoI	RAATTY	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	164, 165, 748
AsuC2I	CCSGG	2 cut(s)	751, 937
AsuHPI	GGTGA	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	189, 293
BccI	CCATC	7 cut(s)	32, 69, 164, 255, 540, 591, 854
BciT130I	CCWGG	1 cut(s)	524
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	2 cut(s)	751, 937
BcoDI	GTCTC	2 cut(s)	504, 869
BfmI	CTRYAG	2 cut(s)	427, 763
BfoI	RGCGCY	1 cut(s)	353
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	2 cut(s)	203, 307
BlsI	GCNGC	2 cut(s)	204, 308
Bme1390I	CCNGG	3 cut(s)	524, 751, 937
BmgT120I	GGNCC	3 cut(s)	164, 165, 748
BmiI	GGNNCC	2 cut(s)	166, 702
BmrFI	CCNGG	3 cut(s)	524, 751, 937
BmsI	GCATC	5 cut(s)	24, 97, 395, 560, 621
BpiI	GAAGAC	1 cut(s)	634
BpmI	CTGGAG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	2 cut(s)	751, 937
BsaI	GGTCTC	1 cut(s)	869
BsaJI	CCNNGG	2 cut(s)	399, 605
BsaWI	WCCGGW	2 cut(s)	837, 899
Bsc4I	CCNNNNNNNGG	6 cut(s)	162, 485, 523, 537, 538, 841
Bse3DI	GCAATG	2 cut(s)	142, 174
BseAI	TCCGGA	1 cut(s)	899
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	2 cut(s)	399, 605
BseGI	GGATG	8 cut(s)	61, 88, 94, 410, 513, 547, 575, 636
BseLI	CCNNNNNNNGG	6 cut(s)	162, 485, 523, 537, 538, 841
BseMI	GCAATG	2 cut(s)	142, 174
BseMII	CTCAG	2 cut(s)	48, 917
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	189, 293
BsgI	GTGCAG	2 cut(s)	65, 205
Bsh1236I	CGCG	1 cut(s)	607
BshFI	GGCC	4 cut(s)	166, 264, 365, 749
BsiHKAI	GWGCWC	1 cut(s)	500
BsiSI	CCGG	4 cut(s)	751, 838, 900, 936
BslFI	GGGAC	1 cut(s)	823
BslI	CCNNNNNNNGG	6 cut(s)	162, 485, 523, 537, 538, 841
BsmAI	GTCTC	2 cut(s)	504, 869
BsmFI	GGGAC	1 cut(s)	823
BsmI	GAATGC	2 cut(s)	215, 716
BsnI	GGCC	4 cut(s)	166, 264, 365, 749
Bso31I	GGTCTC	1 cut(s)	869
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	168, 500
Bsp13I	TCCGGA	1 cut(s)	899
Bsp143I	GATC	3 cut(s)	57, 488, 544
BspACI	CCGC	6 cut(s)	86, 171, 183, 239, 605, 607
BspANI	GGCC	4 cut(s)	166, 264, 365, 749
BspCNI	CTCAG	2 cut(s)	47, 918
BspEI	TCCGGA	1 cut(s)	899
BspFNI	CGCG	1 cut(s)	607
BspLI	GGNNCC	2 cut(s)	166, 702
BspPI	GGATC	2 cut(s)	52, 496
BspTNI	GGTCTC	1 cut(s)	869
BsrDI	GCAATG	2 cut(s)	142, 174
BssECI	CCNNGG	2 cut(s)	399, 605
BssMI	GATC	3 cut(s)	57, 488, 544
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	468, 640
BstDEI	CTNAG	4 cut(s)	34, 536, 769, 926
BstDSI	CCRYGG	1 cut(s)	605
BstF5I	GGATG	8 cut(s)	61, 88, 94, 410, 513, 547, 575, 636
BstFNI	CGCG	1 cut(s)	607
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	3 cut(s)	60, 491, 547
BstMAI	GTCTC	2 cut(s)	504, 869
BstMBI	GATC	3 cut(s)	57, 488, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 261
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	3 cut(s)	522, 749, 935
BstSFI	CTRYAG	2 cut(s)	427, 763
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	1 cut(s)	607
BstV1I	GCAGC	2 cut(s)	189, 293
BstV2I	GAAGAC	1 cut(s)	634
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	653
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	166, 264, 365, 749
BtgI	CCRYGG	1 cut(s)	605
BtsCI	GGATG	8 cut(s)	61, 88, 94, 410, 513, 547, 575, 636
BtsIMutI	CAGTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	164, 165, 748
Cfr42I	CCGCGG	1 cut(s)	608
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	4 cut(s)	235, 296, 424, 469
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	7 cut(s)	113, 232, 443, 559, 627, 697, 883
CviQI	GTAC	4 cut(s)	235, 296, 424, 469
DdeI	CTNAG	4 cut(s)	34, 536, 769, 926
DpnI	GATC	3 cut(s)	59, 490, 546
DpnII	GATC	3 cut(s)	57, 488, 544
DraIII	CACNNNGTG	2 cut(s)	553, 821
EaeI	YGGCCR	2 cut(s)	262, 363
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	869
Eco47III	AGCGCT	1 cut(s)	351
Eco57I	CTGAAG	2 cut(s)	445, 941
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	7 cut(s)	116, 235, 446, 562, 630, 700, 886
FaqI	GGGAC	1 cut(s)	823
FatI	CATG	7 cut(s)	112, 231, 442, 558, 626, 696, 882
FauI	CCCGC	4 cut(s)	93, 190, 246, 600
FauNDI	CATATG	1 cut(s)	800
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	203, 307
FokI	GGATG	8 cut(s)	48, 75, 81, 417, 500, 554, 582, 643
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	203, 307
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	2 cut(s)	203, 307
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	4 cut(s)	166, 264, 365, 749
HapII	CCGG	4 cut(s)	751, 838, 900, 936
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	7 cut(s)	116, 235, 446, 562, 630, 700, 886
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	4 cut(s)	42, 368, 446, 968
HpaII	CCGG	4 cut(s)	751, 838, 900, 936
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	4 cut(s)	196, 298, 320, 556
Hpy188I	TCNGA	3 cut(s)	37, 464, 493
Hpy188III	TCNNGA	2 cut(s)	900, 965
Hpy8I	GTNNAC	4 cut(s)	196, 298, 320, 556
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	5 cut(s)	352, 694, 835, 907, 943
HpyCH4III	ACNGT	2 cut(s)	468, 640
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	7 cut(s)	82, 222, 387, 456, 562, 573, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 261
HpyF3I	CTNAG	4 cut(s)	34, 536, 769, 926
HpySE526I	ACGT	1 cut(s)	724
Hsp92II	CATG	7 cut(s)	116, 235, 446, 562, 630, 700, 886
HspAI	GCGC	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	899
Ksp22I	TGATCA	1 cut(s)	544
KspI	CCGCGG	1 cut(s)	608
Kzo9I	GATC	3 cut(s)	57, 488, 544
LmnI	GCTCC	5 cut(s)	184, 325, 706, 779, 916
Lsp1109I	GCAGC	2 cut(s)	189, 293
LweI	GCATC	5 cut(s)	24, 97, 395, 560, 621
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	4 cut(s)	139, 369, 378, 931
MalI	GATC	3 cut(s)	59, 490, 546
MboI	GATC	3 cut(s)	57, 488, 544
MboII	GAAGA	2 cut(s)	634, 886
MfeI	CAATTG	1 cut(s)	472
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	168, 500
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	4 cut(s)	116, 226, 472, 754
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	2 cut(s)	36, 377
MmeI	TCCRAC	3 cut(s)	487, 757, 898
Mox20I	TGGCCA	1 cut(s)	264
MroI	TCCGGA	1 cut(s)	899
MscI	TGGCCA	1 cut(s)	264
MslI	CAYNNNNRTG	3 cut(s)	111, 588, 629
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	607
MspI	CCGG	4 cut(s)	751, 838, 900, 936
MspR9I	CCNGG	3 cut(s)	524, 751, 937
MunI	CAATTG	1 cut(s)	472
Mva1269I	GAATGC	2 cut(s)	215, 716
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	607
MwoI	GCNNNNNNNGC	2 cut(s)	219, 261
NciI	CCSGG	2 cut(s)	751, 937
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	3 cut(s)	57, 488, 544
NlaIII	CATG	7 cut(s)	116, 235, 446, 562, 630, 700, 886
NlaIV	GGNNCC	2 cut(s)	166, 702
NmeAIII	GCCGAG	2 cut(s)	391, 672
NmuCI	GTSAC	2 cut(s)	139, 369
NspI	RCATGY	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	4 cut(s)	51, 204, 213, 823
PctI	GAATGC	2 cut(s)	215, 716
PfeI	GAWTC	2 cut(s)	446, 968
PkrI	GCNGC	2 cut(s)	204, 308
PleI	GAGTC	2 cut(s)	36, 376
PpsI	GAGTC	2 cut(s)	36, 376
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	2 cut(s)	166, 702
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	164, 165, 748
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	4 cut(s)	236, 297, 425, 470
RsaNI	GTAC	4 cut(s)	235, 296, 424, 469
RseI	CAYNNNNRTG	3 cut(s)	111, 588, 629
SacII	CCGCGG	1 cut(s)	608
SatI	GCNGC	2 cut(s)	203, 307
Sau3AI	GATC	3 cut(s)	57, 488, 544
Sau96I	GGNCC	3 cut(s)	164, 165, 748
SchI	GAGTC	2 cut(s)	36, 377
ScrFI	CCNGG	3 cut(s)	524, 751, 937
SduI	GDGCHC	2 cut(s)	168, 500
SfaNI	GCATC	5 cut(s)	24, 97, 395, 560, 621
SfcI	CTRYAG	2 cut(s)	427, 763
Sfr303I	CCGCGG	1 cut(s)	608
SgrBI	CCGCGG	1 cut(s)	608
SmiMI	CAYNNNNRTG	3 cut(s)	111, 588, 629
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	4 cut(s)	116, 226, 472, 754
SsiI	CCGC	6 cut(s)	86, 171, 183, 239, 605, 607
StyD4I	CCNGG	3 cut(s)	522, 749, 935
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	468, 640
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	4 cut(s)	18, 45, 207, 290
TasI	AATT	4 cut(s)	116, 226, 472, 754
TfiI	GAWTC	2 cut(s)	446, 968
TscAI	CASTG	1 cut(s)	257
TseFI	GTSAC	2 cut(s)	139, 369
TseI	GCWGC	2 cut(s)	202, 306
Tsp45I	GTSAC	2 cut(s)	139, 369
TspDTI	ATGAA	2 cut(s)	129, 459
TspGWI	ACGGA	1 cut(s)	815
TspRI	CASTG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	116
XceI	RCATGY	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.