Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Forward (+)

22804633 .. 22807864

Gene Structure 3232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31590.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGACTTGGAGAGCATAGAGTGTGTGTCATCCTCAGATGGTCTTGATGAGGATGAGATCCATCAACACCTTCACAACAACATCAACAACCCTTCTCATCAGCACCACCATGACTTTTCTTCTTCCAAGCCCAGAAGCAATGCCGCCGGAAATAACAACGCCGCCGGGATTCCGGGCGCTACAGCCATTGCTCCGGCCACCAGCGTTCATGAGCTGCTGGAATGTCCTGTGTGTACGAATTCCATGTACCCACCAATCCATCAGTGCCACAATGGACACACACTGTGTTCCACATGTAAAACAAGGGTCCACAATCGCTGCCCCACCTGTAGGCAGGAGCTTGGAGATATTAGGTGTTTAGCGTTGGAGAAGGTGGCTGAGTCCTTGGAATTACCCTGCAAGTTTTACTCCTTGGGATGCCCGGAAATATTTCCTTACTACAGCAAACTAAAGCATGAATCAGTGTGCAATTTCAGACCATATAATTGCCCATATGCTGGATCAGAGTGCTCTGTTGTTGGGGATATCCCTTTCCTGGTTGCCCATCTTAGAGATGATCACAAAGTAGACATGCACACAGGATGCACATTCAACCATCGCTATGTAAAGTCAAATCCCCGGGAAGTAGAGAACGCCACTTGGATGCTTACAGTCTTCCATTGTTTCGGTCAATACTTCTGTCTTCATTTTGAAGCGTTCCAACTTGCCTCGAGGTTGGAGCAAATGGCAGGAAACTCATATGGGAGGGCACCCCAAGAAGTGTCCGGGATAGCCACCGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

262

Amino Acids

29.13

Weight (kDa)

6.15

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	75 - 110	4.5e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	124 - 199	4.8e-30	Sina, zinc finger
Sina_TRAF	PF03145	219 - 316	1.7e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	709
AccB1I	GGYRCC	1 cut(s)	748
AccB7I	CCANNNNNTGG	1 cut(s)	497
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	2 cut(s)	144, 162
AclWI	GGATC	2 cut(s)	52, 508
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	238
AdeI	CACNNNGTG	1 cut(s)	285
AfaI	GTAC	2 cut(s)	235, 248
AfiI	CCNNNNNNNGG	4 cut(s)	330, 497, 535, 780
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	592, 692
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	2 cut(s)	214, 340
AluI	AGCT	2 cut(s)	214, 340
Alw21I	GWGCWC	1 cut(s)	512
AlwI	GGATC	2 cut(s)	52, 508
Ama87I	CYCGRG	2 cut(s)	618, 709
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	214, 318
ApoI	RAATTY	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	6 cut(s)	166, 174, 422, 619, 620, 766
AvaI	CYCGRG	2 cut(s)	618, 709
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	748
BbsI	GAAGAC	2 cut(s)	646, 674
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	201, 305
BccI	CCATC	5 cut(s)	32, 69, 267, 552, 603
BciT130I	CCWGG	1 cut(s)	536
BclI	TGATCA	1 cut(s)	556
BcnI	CCSGG	6 cut(s)	166, 174, 422, 619, 620, 766
BfmI	CTRYAG	3 cut(s)	180, 328, 439
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	4 cut(s)	144, 162, 215, 319
BlsI	GCNGC	4 cut(s)	145, 163, 216, 320
Bme1390I	CCNGG	7 cut(s)	166, 174, 422, 536, 619, 620, 766
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	2 cut(s)	618, 709
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	308, 750
BmrFI	CCNGG	7 cut(s)	166, 174, 422, 536, 619, 620, 766
BmsI	GCATC	3 cut(s)	407, 572, 633
BpiI	GAAGAC	2 cut(s)	646, 674
BpuMI	CCSGG	6 cut(s)	166, 174, 422, 619, 620, 766
BsaJI	CCNNGG	4 cut(s)	384, 411, 617, 618
BsaWI	WCCGGW	1 cut(s)	776
Bsc4I	CCNNNNNNNGG	4 cut(s)	330, 497, 535, 780
Bse3DI	GCAATG	2 cut(s)	145, 186
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	4 cut(s)	384, 411, 617, 618
BseGI	GGATG	5 cut(s)	29, 58, 422, 587, 648
BseLI	CCNNNNNNNGG	4 cut(s)	330, 497, 535, 780
BseMI	GCAATG	2 cut(s)	145, 186
BseMII	CTCAG	2 cut(s)	48, 369
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	2 cut(s)	201, 305
BshFI	GGCC	1 cut(s)	197
BshNI	GGYRCC	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	512
BsiHKCI	CYCGRG	2 cut(s)	618, 709
BsiSI	CCGG	8 cut(s)	147, 165, 173, 194, 422, 619, 765, 777
BslI	CCNNNNNNNGG	4 cut(s)	330, 497, 535, 780
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	2 cut(s)	618, 709
Bsp1286I	GDGCHC	2 cut(s)	512, 751
Bsp143I	GATC	3 cut(s)	57, 500, 556
BspACI	CCGC	2 cut(s)	144, 162
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	47, 370
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	308, 750
BspPI	GGATC	2 cut(s)	52, 508
BspT107I	GGYRCC	1 cut(s)	748
BsrDI	GCAATG	2 cut(s)	145, 186
BssECI	CCNNGG	4 cut(s)	384, 411, 617, 618
BssMI	GATC	3 cut(s)	57, 500, 556
BssT1I	CCWWGG	2 cut(s)	384, 411
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	285, 652
BstDEI	CTNAG	3 cut(s)	34, 378, 548
BstF5I	GGATG	5 cut(s)	29, 58, 422, 587, 648
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	3 cut(s)	60, 503, 559
BstMBI	GATC	3 cut(s)	57, 500, 556
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	2 cut(s)	297, 574
BstSCI	CCNGG	7 cut(s)	164, 172, 420, 534, 617, 618, 764
BstSFI	CTRYAG	3 cut(s)	180, 328, 439
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	2 cut(s)	201, 305
BstV2I	GAAGAC	2 cut(s)	646, 674
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	197
BtgZI	GCGATG	1 cut(s)	581
BtsCI	GGATG	5 cut(s)	29, 58, 422, 587, 648
BtsIMutI	CAGTG	3 cut(s)	269, 281, 468
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	307
Cfr9I	CCCGGG	1 cut(s)	618
Csp6I	GTAC	2 cut(s)	234, 247
CviAII	CATG	6 cut(s)	110, 209, 244, 294, 455, 571
CviJI	RGCY	7 cut(s)	130, 185, 197, 214, 340, 377, 773
CviKI_1	RGCY	7 cut(s)	130, 185, 197, 214, 340, 377, 773
CviQI	GTAC	2 cut(s)	234, 247
DdeI	CTNAG	3 cut(s)	34, 378, 548
DpnI	GATC	3 cut(s)	59, 502, 558
DpnII	GATC	3 cut(s)	57, 500, 556
DraIII	CACNNNGTG	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	384, 411
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	307
Eco88I	CYCGRG	2 cut(s)	618, 709
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	534
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	384, 411
ErhI	CCWWGG	2 cut(s)	384, 411
FaeI	CATG	6 cut(s)	113, 212, 247, 297, 458, 574
FatI	CATG	6 cut(s)	109, 208, 243, 293, 454, 570
FauNDI	CATATG	2 cut(s)	493, 739
FbaI	TGATCA	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	4 cut(s)	144, 162, 215, 319
FokI	GGATG	5 cut(s)	16, 65, 429, 594, 655
Fsp4HI	GCNGC	4 cut(s)	144, 162, 215, 319
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	4 cut(s)	144, 162, 215, 319
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	8 cut(s)	147, 165, 173, 194, 422, 619, 765, 777
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	6 cut(s)	113, 212, 247, 297, 458, 574
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	169, 380, 458
HpaII	CCGG	8 cut(s)	147, 165, 173, 194, 422, 619, 765, 777
Hpy166II	GTNNAC	3 cut(s)	234, 310, 568
Hpy188I	TCNGA	3 cut(s)	37, 476, 505
Hpy188III	TCNNGA	2 cut(s)	44, 209
Hpy8I	GTNNAC	3 cut(s)	234, 310, 568
HpyAV	CCTTC	4 cut(s)	80, 102, 364, 774
HpyCH4III	ACNGT	2 cut(s)	285, 652
HpyCH4V	TGCA	4 cut(s)	399, 468, 574, 585
HpyF3I	CTNAG	3 cut(s)	34, 378, 548
Hsp92II	CATG	6 cut(s)	113, 212, 247, 297, 458, 574
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	57, 500, 556
LmnI	GCTCC	3 cut(s)	196, 337, 718
Lsp1109I	GCAGC	2 cut(s)	201, 305
LweI	GCATC	3 cut(s)	407, 572, 633
MalI	GATC	3 cut(s)	59, 502, 558
MboI	GATC	3 cut(s)	57, 500, 556
MboII	GAAGA	4 cut(s)	111, 114, 646, 674
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	512, 751
MluCI	AATT	4 cut(s)	238, 389, 469, 484
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	3 cut(s)	345, 696, 724
MnlI	CCTC	5 cut(s)	43, 43, 705, 718, 738
MroXI	GAANNNNTTC	1 cut(s)	429
MslI	CAYNNNNRTG	3 cut(s)	108, 600, 641
MspI	CCGG	8 cut(s)	147, 165, 173, 194, 422, 619, 765, 777
MspR9I	CCNGG	7 cut(s)	166, 174, 422, 536, 619, 620, 766
MvaI	CCWGG	1 cut(s)	536
NciI	CCSGG	6 cut(s)	166, 174, 422, 619, 620, 766
NdeI	CATATG	2 cut(s)	493, 739
NdeII	GATC	3 cut(s)	57, 500, 556
NlaIII	CATG	6 cut(s)	113, 212, 247, 297, 458, 574
NlaIV	GGNNCC	2 cut(s)	308, 750
NspI	RCATGY	2 cut(s)	297, 574
PaeR7I	CTCGAG	1 cut(s)	709
PagI	TCATGA	1 cut(s)	208
PciI	ACATGT	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	169, 458
PflMI	CCANNNNNTGG	1 cut(s)	497
PfoI	TCCNGGA	1 cut(s)	764
PkrI	GCNGC	4 cut(s)	145, 163, 216, 320
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PscI	ACATGT	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	2 cut(s)	308, 750
PspPI	GGNCC	1 cut(s)	307
PspXI	VCTCGAGB	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	235, 248
RsaNI	GTAC	2 cut(s)	234, 247
RseI	CAYNNNNRTG	3 cut(s)	108, 600, 641
SatI	GCNGC	4 cut(s)	144, 162, 215, 319
Sau3AI	GATC	3 cut(s)	57, 500, 556
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	7 cut(s)	166, 174, 422, 536, 619, 620, 766
SduI	GDGCHC	2 cut(s)	512, 751
SetI	ASST	8 cut(s)	72, 216, 329, 342, 356, 375, 716, 785
SfaNI	GCATC	3 cut(s)	407, 572, 633
SfcI	CTRYAG	3 cut(s)	180, 328, 439
Sfr274I	CTCGAG	1 cut(s)	709
SinI	GGWCC	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	709
SmaI	CCCGGG	1 cut(s)	620
SmiMI	CAYNNNNRTG	3 cut(s)	108, 600, 641
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse9I	AATT	4 cut(s)	238, 389, 469, 484
SsiI	CCGC	2 cut(s)	144, 162
SspI	AATATT	1 cut(s)	429
StyD4I	CCNGG	7 cut(s)	164, 172, 420, 534, 617, 618, 764
StyI	CCWWGG	2 cut(s)	384, 411
TaaI	ACNGT	2 cut(s)	285, 652
TaqI	TCGA	1 cut(s)	710
TaqII	GACCGA	1 cut(s)	656
TasI	AATT	4 cut(s)	238, 389, 469, 484
TauI	GCSGC	2 cut(s)	146, 164
TfiI	GAWTC	2 cut(s)	169, 458
TscAI	CASTG	3 cut(s)	269, 288, 468
TseI	GCWGC	2 cut(s)	214, 318
TspDTI	ATGAA	3 cut(s)	197, 471, 674
TspMI	CCCGGG	1 cut(s)	618
TspRI	CASTG	3 cut(s)	269, 288, 468
Van91I	CCANNNNNTGG	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	2 cut(s)	297, 574
XhoI	CTCGAG	1 cut(s)	709
XmaI	CCCGGG	1 cut(s)	618
XmiI	GTMKAC	1 cut(s)	567
XmnI	GAANNNNTTC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.