Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Reverse (-)

2017623 .. 2020663

Gene Structure 3041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGACTTGGAGAGCATAGAGTGTGTTTCATCCTCAGATGGTCTTGATGAGGATGAGATCCATCAACACCTTCACAACCCACAACATCCTTCTCATCAACACCACCATGACTTTTCTTCTTCCAAGCCCAGAAATAATGTTACCAACAACGCCGGAATTCCGGGCCCCACCGCCATTGCTCCGGCCACCAGCGTTCATGAGTTGCTGGAATGTCCGGTGTGTACGAATTCCATGTACCCACCGATTCATCAGTGTCACAATGGACACACACTGTGTTCTACCTGTAAAACAAGGGTCCACAATCGCTGCCCCACTTGTAGGCAGGAGCTTGGAGATATTAGGTGTTTAGCATTGGAGAAGGTGGCTGAGTCCCTGGAGTTACCCTGCAAGTATTACTCCTTGGGATGCCCGGAGATATTTCCTTACTACAGCAAACTAAAGCATGAATCAGTGTGCAATTTCAGACCTTATAATTGCCCGTATGCTGGATCGGAGTGCTCTGTTGTTGGGGATATCCCTTTCCTGGTTGCCCATCTTAGAGATGATCACAAAGTAGACATGCACACAGGATGCACGTTCAACCATCGCTATGTAAAGTCAAATCCCGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

204

Amino Acids

22.87

Weight (kDa)

6.29

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	71 - 106	2.1e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	120 - 195	7.9e-31	Sina, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	2 cut(s)	52, 496
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	156, 226
AdeI	CACNNNGTG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	223, 236
AfiI	CCNNNNNNNGG	3 cut(s)	318, 485, 523
AgsI	TTSAA	1 cut(s)	580
AjnI	CCWGG	2 cut(s)	372, 522
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw21I	GWGCWC	1 cut(s)	500
AlwI	GGATC	2 cut(s)	52, 496
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	2 cut(s)	163, 183
ApaI	GGGCCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	2 cut(s)	156, 226
AspS9I	GGNCC	3 cut(s)	163, 164, 295
AsuC2I	CCSGG	4 cut(s)	162, 410, 606, 607
AvaI	CYCGRG	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	4 cut(s)	32, 69, 540, 591
BciT130I	CCWGG	2 cut(s)	374, 524
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	4 cut(s)	162, 410, 606, 607
BfmI	CTRYAG	1 cut(s)	427
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	6 cut(s)	162, 374, 410, 524, 606, 607
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	605
BmgT120I	GGNCC	3 cut(s)	163, 164, 295
BmiI	GGNNCC	3 cut(s)	165, 166, 296
BmrFI	CCNGG	6 cut(s)	162, 374, 410, 524, 606, 607
BmsI	GCATC	2 cut(s)	395, 560
BpmI	CTGGAG	1 cut(s)	395
BpuMI	CCSGG	4 cut(s)	162, 410, 606, 607
BsaJI	CCNNGG	3 cut(s)	372, 399, 605
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	3 cut(s)	318, 485, 523
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	374, 524
BseDI	CCNNGG	3 cut(s)	372, 399, 605
BseGI	GGATG	5 cut(s)	29, 58, 85, 410, 575
BseLI	CCNNNNNNNGG	3 cut(s)	318, 485, 523
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	48, 357
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	2 cut(s)	165, 185
BsiHKAI	GWGCWC	1 cut(s)	500
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	6 cut(s)	153, 161, 182, 215, 410, 606
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	3 cut(s)	318, 485, 523
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	165, 185
BsoBI	CYCGRG	1 cut(s)	605
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	167, 500
Bsp143I	GATC	3 cut(s)	57, 488, 544
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	2 cut(s)	165, 185
BspCNI	CTCAG	2 cut(s)	47, 358
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	165, 166, 296
BspPI	GGATC	2 cut(s)	52, 496
BsrDI	GCAATG	1 cut(s)	174
BssECI	CCNNGG	3 cut(s)	372, 399, 605
BssMI	GATC	3 cut(s)	57, 488, 544
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	374, 524
Bst4CI	ACNGT	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	34, 366, 536
BstF5I	GGATG	5 cut(s)	29, 58, 85, 410, 575
BstKTI	GATC	3 cut(s)	60, 491, 547
BstMBI	GATC	3 cut(s)	57, 488, 544
BstNI	CCWGG	2 cut(s)	374, 524
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	6 cut(s)	160, 372, 408, 522, 604, 605
BstSFI	CTRYAG	1 cut(s)	427
BstSLI	GKGCMC	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	165, 185
BtgZI	GCGATG	1 cut(s)	569
BtsCI	GGATG	5 cut(s)	29, 58, 85, 410, 575
BtsIMutI	CAGTG	3 cut(s)	257, 269, 456
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	163, 164, 295
Cfr9I	CCCGGG	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	222, 235
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	5 cut(s)	107, 197, 232, 443, 559
CviJI	RGCY	5 cut(s)	127, 165, 185, 328, 365
CviKI_1	RGCY	5 cut(s)	127, 165, 185, 328, 365
CviQI	GTAC	2 cut(s)	222, 235
DdeI	CTNAG	3 cut(s)	34, 366, 536
DpnI	GATC	3 cut(s)	59, 490, 546
DpnII	GATC	3 cut(s)	57, 488, 544
DraIII	CACNNNGTG	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRI	GAATTC	2 cut(s)	156, 226
EcoRII	CCWGG	2 cut(s)	372, 522
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	5 cut(s)	110, 200, 235, 446, 562
FaiI	YATR	9 cut(s)	17, 108, 198, 233, 444, 471, 483, 560, 591
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	5 cut(s)	106, 196, 231, 442, 558
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	5 cut(s)	16, 65, 72, 417, 582
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	165, 185
HapII	CCGG	6 cut(s)	153, 161, 182, 215, 410, 606
Hin1II	CATG	5 cut(s)	110, 200, 235, 446, 562
HinfI	GANTC	3 cut(s)	244, 368, 446
HpaII	CCGG	6 cut(s)	153, 161, 182, 215, 410, 606
Hpy166II	GTNNAC	3 cut(s)	222, 298, 556
Hpy188I	TCNGA	3 cut(s)	37, 464, 493
Hpy188III	TCNNGA	2 cut(s)	44, 197
Hpy8I	GTNNAC	3 cut(s)	222, 298, 556
HpyAV	CCTTC	3 cut(s)	80, 99, 352
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	4 cut(s)	387, 456, 562, 573
HpyF3I	CTNAG	3 cut(s)	34, 366, 536
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	5 cut(s)	110, 200, 235, 446, 562
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	57, 488, 544
LmnI	GCTCC	2 cut(s)	184, 325
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	2 cut(s)	395, 560
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	3 cut(s)	139, 254, 378
MalI	GATC	3 cut(s)	59, 490, 546
MboI	GATC	3 cut(s)	57, 488, 544
MboII	GAAGA	2 cut(s)	108, 111
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	167, 500
MluCI	AATT	4 cut(s)	156, 226, 457, 472
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	2 cut(s)	43, 43
MslI	CAYNNNNRTG	2 cut(s)	105, 588
MspI	CCGG	6 cut(s)	153, 161, 182, 215, 410, 606
MspR9I	CCNGG	6 cut(s)	162, 374, 410, 524, 606, 607
MvaI	CCWGG	2 cut(s)	374, 524
NciI	CCSGG	4 cut(s)	162, 410, 606, 607
NdeII	GATC	3 cut(s)	57, 488, 544
NlaIII	CATG	5 cut(s)	110, 200, 235, 446, 562
NlaIV	GGNNCC	3 cut(s)	165, 166, 296
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	562
PagI	TCATGA	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	244, 446
PkrI	GCNGC	1 cut(s)	308
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	372, 522
PspGI	CCWGG	2 cut(s)	372, 522
PspN4I	GGNNCC	3 cut(s)	165, 166, 296
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	3 cut(s)	163, 164, 295
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	223, 236
RsaNI	GTAC	2 cut(s)	222, 235
RseI	CAYNNNNRTG	2 cut(s)	105, 588
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	3 cut(s)	57, 488, 544
Sau96I	GGNCC	3 cut(s)	163, 164, 295
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	6 cut(s)	162, 374, 410, 524, 606, 607
SduI	GDGCHC	2 cut(s)	167, 500
SetI	ASST	7 cut(s)	72, 284, 330, 344, 363, 469, 578
SfaNI	GCATC	2 cut(s)	395, 560
SfcI	CTRYAG	1 cut(s)	427
SinI	GGWCC	1 cut(s)	295
SmaI	CCCGGG	1 cut(s)	607
SmiMI	CAYNNNNRTG	2 cut(s)	105, 588
Sse9I	AATT	4 cut(s)	156, 226, 457, 472
SsiI	CCGC	1 cut(s)	171
StyD4I	CCNGG	6 cut(s)	160, 372, 408, 522, 604, 605
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	1 cut(s)	578
TasI	AATT	4 cut(s)	156, 226, 457, 472
TfiI	GAWTC	2 cut(s)	244, 446
TscAI	CASTG	3 cut(s)	257, 276, 456
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	18, 185, 236, 459
TspMI	CCCGGG	1 cut(s)	605
TspRI	CASTG	3 cut(s)	257, 276, 456
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	2 cut(s)	156, 226
XceI	RCATGY	1 cut(s)	562
XmaI	CCCGGG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.