Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Forward (+)

66741947 .. 66744589

Gene Structure 2643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG447300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGACTTGGAGAGCATAGAGTGTGTTTCATCCTCAGATGGTCTTGATGAGGATGAGATCCATCAACACCTTCACAACCCACAACACCACCATGACTTTTCTTCTTCCAAGCCCAGAAATAATGTTACCAACAACGCCGGAATTCCGGGCCCCACCGCCATTGCTCCGGCCACCAGCGTTCATGAGTTGCTGGAATGTCCGGTGTGTACAAATTCAATGTACCCACCGATTCATCAGTGCCACAATGGACACACACTGTGTTCCACCTGTAAAACAAGGGTCCACAATCGCTGCCCCACTTGTAGACAGGAGCTCGGAGATATTAGGTGTTTAGCGTTGGAGAAGGTGGCTGAGTCCTTGGAATTACCCTGCAAGTATTACTCCTTGGGGTGCCCGGAAATATTTCCTTACTACAGCAAACTAAAGCATGAATCAGTGTGCAATTTCAGACCTTATAATTGCCCATATGCTGGATCGGAGTGCTCTGTTGTTGGGGATATCCCTTTCCTGGTTGCCCATCTTAGAGATGATCACAAAGTAGACATGCACACAGGATGCACATTCAACCATCGCTATGTAAAGTCAAATCCCCGGGAAGTAGAGAATGCCACTTGGATGCTTACAGTCTTCCATTGTTTTGGTCAATACTTCTGCCTTCATTTTGAAGCCTTCCAGCTTGGCATGGCTCCTGTTTATATGGCTTTTCTACGTTTTATGGGTGATGAGAATGAGGCTCGGAACTACAGCTACAGCCTTGAGGTTGGAGCAAATGGCAGGAAACTCATATGGGAGGGCACCCCAAGAAGTGTCCGTGATAGCCACCGGAAGGTAAGGGATAGCCATGACGGTCTCATTATTCAACGAAACATGGCTTTATTTTTCTCTGGAGGAGATAGGAAGGAGCTTAAGCTGAGAGTTACCGGGAGGATATGGAAGGAACAGCAAAATCCAGATGCTGGAGTGTGCATACCAAACTTATGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

328

Amino Acids

37.26

Weight (kDa)

6.46

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	66 - 101	4.3e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	115 - 190	2e-30	Sina, zinc finger
Sina_TRAF	PF03145	210 - 307	1.6e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AccB1I	GGYRCC	2 cut(s)	390, 794
AccB7I	CCANNNNNTGG	2 cut(s)	470, 956
AccI	GTMKAC	2 cut(s)	304, 540
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	2 cut(s)	52, 481
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	141, 211
AdeI	CACNNNGTG	1 cut(s)	258
AfaI	GTAC	2 cut(s)	208, 221
AfiI	CCNNNNNNNGG	4 cut(s)	470, 508, 826, 956
AflII	CTTAAG	1 cut(s)	905
AgsI	TTSAA	4 cut(s)	216, 565, 665, 860
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	6 cut(s)	313, 676, 747, 904, 910, 984
AluI	AGCT	6 cut(s)	313, 676, 747, 904, 910, 984
Alw21I	GWGCWC	2 cut(s)	315, 485
Alw26I	GTCTC	1 cut(s)	854
AlwI	GGATC	2 cut(s)	52, 481
AlwNI	CAGNNNCTG	1 cut(s)	956
Ama87I	CYCGRG	1 cut(s)	591
AoxI	GGCC	2 cut(s)	148, 168
ApaI	GGGCCC	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	291
ApoI	RAATTY	2 cut(s)	141, 211
Asp700I	GAANNNNTTC	1 cut(s)	402
AspS9I	GGNCC	3 cut(s)	148, 149, 280
AsuC2I	CCSGG	5 cut(s)	147, 395, 592, 593, 922
AsuHPI	GGTGA	1 cut(s)	731
AvaI	CYCGRG	1 cut(s)	591
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	3 cut(s)	152, 395, 797
BanI	GGYRCC	2 cut(s)	390, 794
BanII	GRGCYC	2 cut(s)	152, 315
BbsI	GAAGAC	1 cut(s)	619
Bbv12I	GWGCWC	2 cut(s)	315, 485
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	4 cut(s)	32, 69, 525, 576
BciT130I	CCWGG	1 cut(s)	509
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	5 cut(s)	147, 395, 592, 593, 922
BcoDI	GTCTC	1 cut(s)	854
BfmI	CTRYAG	3 cut(s)	412, 742, 748
BfrI	CTTAAG	1 cut(s)	905
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
Bme1390I	CCNGG	6 cut(s)	147, 395, 509, 592, 593, 922
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	591
BmgT120I	GGNCC	3 cut(s)	148, 149, 280
BmiI	GGNNCC	6 cut(s)	150, 151, 281, 392, 687, 796
BmrFI	CCNGG	6 cut(s)	147, 395, 509, 592, 593, 922
BmsI	GCATC	3 cut(s)	545, 606, 943
BpiI	GAAGAC	1 cut(s)	619
BpmI	CTGGAG	2 cut(s)	906, 978
BpuEI	CTTGAG	1 cut(s)	776
BpuMI	CCSGG	5 cut(s)	147, 395, 592, 593, 922
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	4 cut(s)	357, 384, 590, 591
BsaWI	WCCGGW	2 cut(s)	199, 822
Bsc4I	CCNNNNNNNGG	4 cut(s)	470, 508, 826, 956
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	4 cut(s)	357, 384, 590, 591
BseGI	GGATG	4 cut(s)	29, 58, 560, 621
BseLI	CCNNNNNNNGG	4 cut(s)	470, 508, 826, 956
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	3 cut(s)	48, 342, 902
BseRI	GAGGAG	1 cut(s)	903
BseSI	GKGCMC	3 cut(s)	152, 395, 797
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	2 cut(s)	150, 170
BshNI	GGYRCC	2 cut(s)	390, 794
BsiHKAI	GWGCWC	2 cut(s)	315, 485
BsiHKCI	CYCGRG	1 cut(s)	591
BsiSI	CCGG	8 cut(s)	138, 146, 167, 200, 395, 592, 823, 921
BslI	CCNNNNNNNGG	4 cut(s)	470, 508, 826, 956
BsmAI	GTCTC	1 cut(s)	854
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	150, 170
Bso31I	GGTCTC	1 cut(s)	854
BsoBI	CYCGRG	1 cut(s)	591
Bsp120I	GGGCCC	1 cut(s)	148
Bsp1286I	GDGCHC	5 cut(s)	152, 315, 395, 485, 797
Bsp1407I	TGTACA	1 cut(s)	206
Bsp143I	GATC	3 cut(s)	57, 473, 529
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	2 cut(s)	150, 170
BspCNI	CTCAG	3 cut(s)	47, 343, 903
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	6 cut(s)	150, 151, 281, 392, 687, 796
BspPI	GGATC	2 cut(s)	52, 481
BspT107I	GGYRCC	2 cut(s)	390, 794
BspTI	CTTAAG	1 cut(s)	905
BspTNI	GGTCTC	1 cut(s)	854
BsrDI	GCAATG	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	206
BssECI	CCNNGG	4 cut(s)	357, 384, 590, 591
BssMI	GATC	3 cut(s)	57, 473, 529
BssT1I	CCWWGG	2 cut(s)	357, 384
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	3 cut(s)	258, 625, 848
BstAFI	CTTAAG	1 cut(s)	905
BstAUI	TGTACA	1 cut(s)	206
BstDEI	CTNAG	4 cut(s)	34, 351, 521, 911
BstF5I	GGATG	4 cut(s)	29, 58, 560, 621
BstKTI	GATC	3 cut(s)	60, 476, 532
BstMAI	GTCTC	1 cut(s)	854
BstMBI	GATC	3 cut(s)	57, 473, 529
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	6 cut(s)	145, 393, 507, 590, 591, 920
BstSFI	CTRYAG	3 cut(s)	412, 742, 748
BstSLI	GKGCMC	3 cut(s)	152, 395, 797
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	619
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	150, 170
BtgZI	GCGATG	1 cut(s)	554
BtsCI	GGATG	4 cut(s)	29, 58, 560, 621
BtsIMutI	CAGTG	3 cut(s)	242, 254, 441
CaiI	CAGNNNCTG	1 cut(s)	956
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	3 cut(s)	148, 149, 280
Cfr9I	CCCGGG	1 cut(s)	591
Csp6I	GTAC	2 cut(s)	207, 220
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviAII	CATG	7 cut(s)	92, 182, 428, 544, 682, 842, 868
CviQI	GTAC	2 cut(s)	207, 220
DdeI	CTNAG	4 cut(s)	34, 351, 521, 911
DpnI	GATC	3 cut(s)	59, 475, 531
DpnII	GATC	3 cut(s)	57, 473, 529
DraIII	CACNNNGTG	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	357, 384
Eco24I	GRGCYC	2 cut(s)	152, 315
Eco31I	GGTCTC	1 cut(s)	854
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	591
EcoICRI	GAGCTC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	357, 384
EcoT38I	GRGCYC	2 cut(s)	152, 315
ErhI	CCWWGG	2 cut(s)	357, 384
FaeI	CATG	7 cut(s)	95, 185, 431, 547, 685, 845, 871
FatI	CATG	7 cut(s)	91, 181, 427, 543, 681, 841, 867
FauNDI	CATATG	2 cut(s)	466, 785
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	2 cut(s)	304, 540
Fnu4HI	GCNGC	1 cut(s)	292
FokI	GGATG	4 cut(s)	16, 65, 567, 628
FriOI	GRGCYC	2 cut(s)	152, 315
Fsp4HI	GCNGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	292
GsuI	CTGGAG	2 cut(s)	906, 978
HaeIII	GGCC	2 cut(s)	150, 170
HapII	CCGG	8 cut(s)	138, 146, 167, 200, 395, 592, 823, 921
Hin1II	CATG	7 cut(s)	95, 185, 431, 547, 685, 845, 871
HinfI	GANTC	3 cut(s)	229, 353, 431
HpaII	CCGG	8 cut(s)	138, 146, 167, 200, 395, 592, 823, 921
HphI	GGTGA	1 cut(s)	731
Hpy166II	GTNNAC	4 cut(s)	207, 283, 305, 541
Hpy188I	TCNGA	5 cut(s)	37, 317, 449, 478, 738
Hpy188III	TCNNGA	4 cut(s)	44, 182, 885, 950
Hpy8I	GTNNAC	4 cut(s)	207, 283, 305, 541
HpyAV	CCTTC	7 cut(s)	80, 337, 665, 679, 820, 892, 928
HpyCH4III	ACNGT	3 cut(s)	258, 625, 848
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	5 cut(s)	372, 441, 547, 558, 966
HpyF3I	CTNAG	4 cut(s)	34, 351, 521, 911
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	7 cut(s)	95, 185, 431, 547, 685, 845, 871
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	3 cut(s)	57, 473, 529
LmnI	GCTCC	5 cut(s)	169, 310, 691, 764, 901
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	3 cut(s)	545, 606, 943
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	2 cut(s)	124, 916
MalI	GATC	3 cut(s)	59, 475, 531
MboI	GATC	3 cut(s)	57, 473, 529
MboII	GAAGA	3 cut(s)	93, 96, 619
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	5 cut(s)	152, 315, 395, 485, 797
MluCI	AATT	5 cut(s)	141, 211, 362, 442, 457
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	318, 742
MnlI	CCTC	7 cut(s)	43, 43, 724, 751, 784, 881, 918
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	1 cut(s)	906
MslI	CAYNNNNRTG	3 cut(s)	90, 573, 614
MspCI	CTTAAG	1 cut(s)	905
MspI	CCGG	8 cut(s)	138, 146, 167, 200, 395, 592, 823, 921
MspR9I	CCNGG	6 cut(s)	147, 395, 509, 592, 593, 922
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	509
NciI	CCSGG	5 cut(s)	147, 395, 592, 593, 922
NdeI	CATATG	2 cut(s)	466, 785
NdeII	GATC	3 cut(s)	57, 473, 529
NlaIII	CATG	7 cut(s)	95, 185, 431, 547, 685, 845, 871
NlaIV	GGNNCC	6 cut(s)	150, 151, 281, 392, 687, 796
NspI	RCATGY	1 cut(s)	547
PagI	TCATGA	1 cut(s)	181
PctI	GAATGC	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	229, 431
PflMI	CCANNNNNTGG	2 cut(s)	470, 956
PkrI	GCNGC	1 cut(s)	293
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	6 cut(s)	150, 151, 281, 392, 687, 796
PspOMI	GGGCCC	1 cut(s)	148
PspPI	GGNCC	3 cut(s)	148, 149, 280
PsrI	GAACNNNNNNTAC	2 cut(s)	731, 763
PstNI	CAGNNNCTG	1 cut(s)	956
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	208, 221
RsaNI	GTAC	2 cut(s)	207, 220
RseI	CAYNNNNRTG	3 cut(s)	90, 573, 614
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	906
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	3 cut(s)	57, 473, 529
Sau96I	GGNCC	3 cut(s)	148, 149, 280
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	6 cut(s)	147, 395, 509, 592, 593, 922
SduI	GDGCHC	5 cut(s)	152, 315, 395, 485, 797
SfaNI	GCATC	3 cut(s)	545, 606, 943
SfcI	CTRYAG	3 cut(s)	412, 742, 748
SinI	GGWCC	1 cut(s)	280
SmaI	CCCGGG	1 cut(s)	593
SmiMI	CAYNNNNRTG	3 cut(s)	90, 573, 614
SmlI	CTYRAG	2 cut(s)	755, 905
SmoI	CTYRAG	2 cut(s)	755, 905
Sse9I	AATT	5 cut(s)	141, 211, 362, 442, 457
SsiI	CCGC	1 cut(s)	156
SspI	AATATT	1 cut(s)	402
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	6 cut(s)	145, 393, 507, 590, 591, 920
StyI	CCWWGG	2 cut(s)	357, 384
TaaI	ACNGT	3 cut(s)	258, 625, 848
TaiI	ACGT	1 cut(s)	712
TasI	AATT	5 cut(s)	141, 211, 362, 442, 457
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	229, 431
Tru1I	TTAA	1 cut(s)	906
Tru9I	TTAA	1 cut(s)	906
TscAI	CASTG	3 cut(s)	242, 261, 441
TseI	GCWGC	1 cut(s)	291
TspDTI	ATGAA	5 cut(s)	18, 170, 221, 444, 647
TspGWI	ACGGA	1 cut(s)	800
TspMI	CCCGGG	1 cut(s)	591
TspRI	CASTG	3 cut(s)	242, 261, 441
Van91I	CCANNNNNTGG	2 cut(s)	470, 956
Vha464I	CTTAAG	1 cut(s)	905
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	2 cut(s)	141, 211
XceI	RCATGY	1 cut(s)	547
XmaI	CCCGGG	1 cut(s)	591
XmiI	GTMKAC	2 cut(s)	304, 540
XmnI	GAANNNNTTC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.