E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G27880 AT5G53360 AT5G53360 |
| fragaria_vesca | FvH4_4g04610 FvH4_5g04860 |
| malus_domestica | MD06G1109400.v1.1 MD14G1130400.v1.1 |
| prunus_persica | Prupe.5G122400_v2.0.a1 |
| pyrus_communis | pycom06g10290 |
| rosa_chinensis | RchiOBHm_Chr7g0194231 |
| rosa_laevigata | RLG00000004208 |
| rosa_multiflora | Rmu_sc0000901.1_g000003 Rmu_sc0009433.1_g000016 |
| rosa_roxburghii | Rroxscaffold_3G00261480 |
| rosa_rugosa | Rorug07G0014500 Rorug07G0014600 |
| rosa_samantha | Rh7AG141900 Rh7BG142300 Rh7CG146000 Rh7DG143300 |
| rosa_wichuraiana | Rw7G012130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 566 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 182, 668 |
| AccII | CGCG | 1 cut(s) | 306 |
| AfaI | GTAC | 1 cut(s) | 271 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 182, 668 |
| AgsI | TTSAA | 3 cut(s) | 20, 344, 377 |
| AluBI | AGCT | 3 cut(s) | 62, 388, 699 |
| AluI | AGCT | 3 cut(s) | 62, 388, 699 |
| Alw26I | GTCTC | 3 cut(s) | 150, 540, 597 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 668 |
| ApeKI | GCWGC | 1 cut(s) | 197 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 381 |
| AsuHPI | GGTGA | 1 cut(s) | 218 |
| BbsI | GAAGAC | 1 cut(s) | 359 |
| BbvI | GCAGC | 1 cut(s) | 184 |
| BclI | TGATCA | 1 cut(s) | 241 |
| BcoDI | GTCTC | 3 cut(s) | 150, 540, 597 |
| BfmI | CTRYAG | 1 cut(s) | 201 |
| BisI | GCNGC | 1 cut(s) | 198 |
| BlsI | GCNGC | 1 cut(s) | 199 |
| BmiI | GGNNCC | 1 cut(s) | 399 |
| BmsI | GCATC | 2 cut(s) | 92, 318 |
| BpiI | GAAGAC | 1 cut(s) | 359 |
| BpmI | CTGGAG | 1 cut(s) | 384 |
| BpuEI | CTTGAG | 2 cut(s) | 71, 92 |
| BsaJI | CCNNGG | 1 cut(s) | 106 |
| BsaWI | WCCGGW | 1 cut(s) | 596 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 182, 668 |
| Bse1I | ACTGG | 3 cut(s) | 268, 401, 637 |
| BseDI | CCNNGG | 1 cut(s) | 106 |
| BseGI | GGATG | 3 cut(s) | 107, 272, 333 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 182, 668 |
| BseMII | CTCAG | 2 cut(s) | 54, 410 |
| BseNI | ACTGG | 3 cut(s) | 268, 401, 637 |
| BseXI | GCAGC | 1 cut(s) | 184 |
| Bsh1236I | CGCG | 1 cut(s) | 306 |
| BsiSI | CCGG | 1 cut(s) | 597 |
| BslFI | GGGAC | 1 cut(s) | 520 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 182, 668 |
| BsmAI | GTCTC | 3 cut(s) | 150, 540, 597 |
| BsmFI | GGGAC | 1 cut(s) | 520 |
| Bsp143I | GATC | 1 cut(s) | 241 |
| BspCNI | CTCAG | 2 cut(s) | 55, 411 |
| BspFNI | CGCG | 1 cut(s) | 306 |
| BspHI | TCATGA | 1 cut(s) | 553 |
| BspLI | GGNNCC | 1 cut(s) | 399 |
| BsrI | ACTGG | 3 cut(s) | 268, 401, 637 |
| BssECI | CCNNGG | 1 cut(s) | 106 |
| BssMI | GATC | 1 cut(s) | 241 |
| BssT1I | CCWWGG | 1 cut(s) | 106 |
| Bst4CI | ACNGT | 6 cut(s) | 81, 128, 337, 464, 551, 560 |
| Bst6I | CTCTTC | 1 cut(s) | 593 |
| BstC8I | GCNNGC | 1 cut(s) | 184 |
| BstDEI | CTNAG | 3 cut(s) | 63, 419, 623 |
| BstF5I | GGATG | 3 cut(s) | 107, 272, 333 |
| BstFNI | CGCG | 1 cut(s) | 306 |
| BstKTI | GATC | 1 cut(s) | 244 |
| BstMAI | GTCTC | 3 cut(s) | 150, 540, 597 |
| BstMBI | GATC | 1 cut(s) | 241 |
| BstSFI | CTRYAG | 1 cut(s) | 201 |
| BstUI | CGCG | 1 cut(s) | 306 |
| BstV1I | GCAGC | 1 cut(s) | 184 |
| BstV2I | GAAGAC | 1 cut(s) | 359 |
| BtgZI | GCGATG | 1 cut(s) | 447 |
| BtsCI | GGATG | 3 cut(s) | 107, 272, 333 |
| BtsI | GCAGTG | 1 cut(s) | 487 |
| BtsIMutI | CAGTG | 2 cut(s) | 487, 630 |
| Cac8I | GCNNGC | 1 cut(s) | 184 |
| CaiI | CAGNNNCTG | 1 cut(s) | 668 |
| CciI | TCATGA | 1 cut(s) | 553 |
| CseI | GACGC | 1 cut(s) | 452 |
| Csp6I | GTAC | 1 cut(s) | 270 |
| CviAII | CATG | 6 cut(s) | 140, 409, 427, 498, 554, 580 |
| CviJI | RGCY | 5 cut(s) | 62, 186, 388, 398, 699 |
| CviKI_1 | RGCY | 5 cut(s) | 62, 186, 388, 398, 699 |
| CviQI | GTAC | 1 cut(s) | 270 |
| DdeI | CTNAG | 3 cut(s) | 63, 419, 623 |
| DpnI | GATC | 1 cut(s) | 243 |
| DpnII | GATC | 1 cut(s) | 241 |
| Eam1104I | CTCTTC | 1 cut(s) | 593 |
| EarI | CTCTTC | 1 cut(s) | 593 |
| Eco130I | CCWWGG | 1 cut(s) | 106 |
| EcoT14I | CCWWGG | 1 cut(s) | 106 |
| EcoT22I | ATGCAT | 1 cut(s) | 261 |
| ErhI | CCWWGG | 1 cut(s) | 106 |
| FaeI | CATG | 6 cut(s) | 143, 412, 430, 501, 557, 583 |
| FaqI | GGGAC | 1 cut(s) | 520 |
| FatI | CATG | 6 cut(s) | 139, 408, 426, 497, 553, 579 |
| FauNDI | CATATG | 1 cut(s) | 178 |
| FbaI | TGATCA | 1 cut(s) | 241 |
| Fnu4HI | GCNGC | 1 cut(s) | 198 |
| FokI | GGATG | 3 cut(s) | 114, 279, 340 |
| Fsp4HI | GCNGC | 1 cut(s) | 198 |
| GluI | GCNGC | 1 cut(s) | 198 |
| GsuI | CTGGAG | 1 cut(s) | 384 |
| HapII | CCGG | 1 cut(s) | 597 |
| HgaI | GACGC | 1 cut(s) | 452 |
| Hin1II | CATG | 6 cut(s) | 143, 412, 430, 501, 557, 583 |
| HinfI | GANTC | 7 cut(s) | 65, 143, 423, 627, 639, 658, 665 |
| HpaII | CCGG | 1 cut(s) | 597 |
| HphI | GGTGA | 1 cut(s) | 218 |
| Hpy166II | GTNNAC | 2 cut(s) | 131, 406 |
| Hpy188I | TCNGA | 4 cut(s) | 190, 420, 524, 545 |
| Hpy188III | TCNNGA | 5 cut(s) | 32, 50, 554, 643, 662 |
| Hpy8I | GTNNAC | 2 cut(s) | 131, 406 |
| HpyAV | CCTTC | 1 cut(s) | 497 |
| HpyCH4III | ACNGT | 6 cut(s) | 81, 128, 337, 464, 551, 560 |
| HpyCH4IV | ACGT | 1 cut(s) | 272 |
| HpyCH4V | TGCA | 4 cut(s) | 39, 84, 259, 678 |
| HpyF3I | CTNAG | 3 cut(s) | 63, 419, 623 |
| HpySE526I | ACGT | 1 cut(s) | 272 |
| Hsp92II | CATG | 6 cut(s) | 143, 412, 430, 501, 557, 583 |
| Ksp22I | TGATCA | 1 cut(s) | 241 |
| Kzo9I | GATC | 1 cut(s) | 241 |
| LmnI | GCTCC | 1 cut(s) | 403 |
| Lsp1109I | GCAGC | 1 cut(s) | 184 |
| LweI | GCATC | 2 cut(s) | 92, 318 |
| MaeII | ACGT | 1 cut(s) | 272 |
| MaeIII | GTNAC | 5 cut(s) | 75, 152, 206, 530, 628 |
| MalI | GATC | 1 cut(s) | 243 |
| MboI | GATC | 1 cut(s) | 241 |
| MboII | GAAGA | 4 cut(s) | 359, 449, 580, 648 |
| MlyI | GAGTC | 3 cut(s) | 74, 152, 636 |
| MmeI | TCCRAC | 1 cut(s) | 454 |
| MnlI | CCTC | 2 cut(s) | 470, 694 |
| Mph1103I | ATGCAT | 1 cut(s) | 261 |
| MroXI | GAANNNNTTC | 1 cut(s) | 381 |
| MseI | TTAA | 3 cut(s) | 233, 276, 291 |
| MslI | CAYNNNNRTG | 1 cut(s) | 285 |
| MspI | CCGG | 1 cut(s) | 597 |
| MvnI | CGCG | 1 cut(s) | 306 |
| NdeI | CATATG | 1 cut(s) | 178 |
| NdeII | GATC | 1 cut(s) | 241 |
| NlaIII | CATG | 6 cut(s) | 143, 412, 430, 501, 557, 583 |
| NlaIV | GGNNCC | 1 cut(s) | 399 |
| NmuCI | GTSAC | 3 cut(s) | 206, 530, 628 |
| NsiI | ATGCAT | 1 cut(s) | 261 |
| PagI | TCATGA | 1 cut(s) | 553 |
| PdmI | GAANNNNTTC | 1 cut(s) | 381 |
| PfeI | GAWTC | 4 cut(s) | 423, 639, 658, 665 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 182, 668 |
| PkrI | GCNGC | 1 cut(s) | 199 |
| PleI | GAGTC | 3 cut(s) | 73, 151, 635 |
| PpsI | GAGTC | 3 cut(s) | 73, 151, 635 |
| PsiI | TTATAA | 1 cut(s) | 566 |
| PspN4I | GGNNCC | 1 cut(s) | 399 |
| PstNI | CAGNNNCTG | 1 cut(s) | 668 |
| RsaI | GTAC | 1 cut(s) | 271 |
| RsaNI | GTAC | 1 cut(s) | 270 |
| RseI | CAYNNNNRTG | 1 cut(s) | 285 |
| SaqAI | TTAA | 3 cut(s) | 233, 276, 291 |
| SatI | GCNGC | 1 cut(s) | 198 |
| Sau3AI | GATC | 1 cut(s) | 241 |
| SchI | GAGTC | 3 cut(s) | 74, 152, 636 |
| SetI | ASST | 8 cut(s) | 25, 64, 166, 208, 275, 390, 686, 701 |
| SfaNI | GCATC | 2 cut(s) | 92, 318 |
| SfcI | CTRYAG | 1 cut(s) | 201 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 285 |
| SmlI | CTYRAG | 2 cut(s) | 50, 71 |
| SmoI | CTYRAG | 2 cut(s) | 50, 71 |
| StyI | CCWWGG | 1 cut(s) | 106 |
| TaaI | ACNGT | 6 cut(s) | 81, 128, 337, 464, 551, 560 |
| TaiI | ACGT | 1 cut(s) | 275 |
| TaqI | TCGA | 1 cut(s) | 252 |
| TfiI | GAWTC | 4 cut(s) | 423, 639, 658, 665 |
| Tru1I | TTAA | 3 cut(s) | 233, 276, 291 |
| Tru9I | TTAA | 3 cut(s) | 233, 276, 291 |
| TscAI | CASTG | 2 cut(s) | 487, 637 |
| TseFI | GTSAC | 3 cut(s) | 206, 530, 628 |
| TseI | GCWGC | 1 cut(s) | 197 |
| Tsp45I | GTSAC | 3 cut(s) | 206, 530, 628 |
| TspDTI | ATGAA | 3 cut(s) | 359, 415, 450 |
| TspRI | CASTG | 2 cut(s) | 487, 637 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 182, 668 |
| XmnI | GAANNNNTTC | 1 cut(s) | 381 |
| Zsp2I | ATGCAT | 1 cut(s) | 261 |