E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G27880 AT5G53360 AT5G53360 |
| fragaria_vesca | FvH4_4g04610 FvH4_5g04860 |
| malus_domestica | MD06G1109400.v1.1 MD14G1130400.v1.1 |
| prunus_persica | Prupe.5G122400_v2.0.a1 |
| pyrus_communis | pycom06g10290 |
| rosa_chinensis | RchiOBHm_Chr7g0194231 |
| rosa_laevigata | RLG00000004208 |
| rosa_multiflora | Rmu_sc0000901.1_g000003 Rmu_sc0009433.1_g000016 |
| rosa_roxburghii | Rroxscaffold_3G00261480 |
| rosa_rugosa | Rorug07G0014500 Rorug07G0014600 |
| rosa_samantha | Rh7AG141900 Rh7BG142300 Rh7CG146000 Rh7DG143300 |
| rosa_wichuraiana | Rw7G012130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 267 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 446 |
| AccI | GTMKAC | 1 cut(s) | 576 |
| AciI | CCGC | 1 cut(s) | 73 |
| AclWI | GGATC | 3 cut(s) | 53, 457, 538 |
| AcoI | YGGCCR | 2 cut(s) | 144, 490 |
| AcsI | RAATTY | 1 cut(s) | 716 |
| AdeI | CACNNNGTG | 1 cut(s) | 234 |
| AfaI | GTAC | 1 cut(s) | 623 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 446 |
| AflIII | ACRYGT | 1 cut(s) | 35 |
| AgeI | ACCGGT | 1 cut(s) | 264 |
| AgsI | TTSAA | 3 cut(s) | 23, 541, 641 |
| AjnI | CCWGG | 1 cut(s) | 445 |
| AluBI | AGCT | 3 cut(s) | 134, 880, 886 |
| AluI | AGCT | 3 cut(s) | 134, 880, 886 |
| Alw21I | GWGCWC | 2 cut(s) | 239, 461 |
| Alw26I | GTCTC | 6 cut(s) | 51, 126, 144, 288, 830, 861 |
| AlwI | GGATC | 3 cut(s) | 53, 457, 538 |
| AoxI | GGCC | 3 cut(s) | 108, 144, 490 |
| ApeKI | GCWGC | 3 cut(s) | 366, 584, 877 |
| ApoI | RAATTY | 1 cut(s) | 716 |
| AsiGI | ACCGGT | 1 cut(s) | 264 |
| AspLEI | GCGC | 1 cut(s) | 743 |
| AsuC2I | CCSGG | 1 cut(s) | 890 |
| AsuHPI | GGTGA | 4 cut(s) | 77, 83, 268, 707 |
| BaeGI | GKGCMC | 2 cut(s) | 228, 272 |
| BalI | TGGCCA | 1 cut(s) | 492 |
| BanI | GGYRCC | 1 cut(s) | 267 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 633, 665 |
| Bbv12I | GWGCWC | 2 cut(s) | 239, 461 |
| BbvCI | CCTCAGC | 1 cut(s) | 112 |
| BbvI | GCAGC | 3 cut(s) | 353, 596, 889 |
| BccI | CCATC | 6 cut(s) | 35, 90, 96, 105, 501, 815 |
| BceAI | ACGGC | 2 cut(s) | 60, 686 |
| BciT130I | CCWGG | 1 cut(s) | 447 |
| BcnI | CCSGG | 1 cut(s) | 890 |
| BcoDI | GTCTC | 6 cut(s) | 51, 126, 144, 288, 830, 861 |
| BfaI | CTAG | 2 cut(s) | 335, 925 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 707 |
| BglII | AGATCT | 1 cut(s) | 375 |
| BisI | GCNGC | 4 cut(s) | 73, 367, 585, 878 |
| BlsI | GCNGC | 4 cut(s) | 74, 368, 586, 879 |
| BmcAI | AGTACT | 1 cut(s) | 623 |
| Bme1390I | CCNGG | 2 cut(s) | 447, 890 |
| BmiI | GGNNCC | 3 cut(s) | 269, 663, 772 |
| BmrFI | CCNGG | 2 cut(s) | 447, 890 |
| BmsI | GCATC | 2 cut(s) | 582, 688 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 44, 76 |
| BpmI | CTGGAG | 1 cut(s) | 752 |
| Bpu10I | CCTNAGC | 1 cut(s) | 112 |
| BpuEI | CTTGAG | 1 cut(s) | 866 |
| BpuMI | CCSGG | 1 cut(s) | 890 |
| BsaAI | YACGTR | 1 cut(s) | 788 |
| BsaBI | GATNNNNATC | 1 cut(s) | 795 |
| BsaI | GGTCTC | 1 cut(s) | 830 |
| BsaJI | CCNNGG | 1 cut(s) | 776 |
| BsaWI | WCCGGW | 2 cut(s) | 264, 664 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 772, 802 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 446 |
| Bse118I | RCCGGY | 1 cut(s) | 264 |
| Bse1I | ACTGG | 3 cut(s) | 211, 619, 735 |
| Bse3DI | GCAATG | 1 cut(s) | 672 |
| Bse8I | GATNNNNATC | 1 cut(s) | 795 |
| BseBI | CCWGG | 1 cut(s) | 447 |
| BseDI | CCNNGG | 1 cut(s) | 776 |
| BseGI | GGATG | 3 cut(s) | 13, 97, 597 |
| BseJI | GATNNNNATC | 1 cut(s) | 795 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 446 |
| BseMI | GCAATG | 1 cut(s) | 672 |
| BseMII | CTCAG | 4 cut(s) | 126, 425, 444, 474 |
| BseNI | ACTGG | 3 cut(s) | 211, 619, 735 |
| BseSI | GKGCMC | 2 cut(s) | 228, 272 |
| BseXI | GCAGC | 3 cut(s) | 353, 596, 889 |
| BsgI | GTGCAG | 2 cut(s) | 166, 617 |
| BshFI | GGCC | 3 cut(s) | 110, 146, 492 |
| BshNI | GGYRCC | 1 cut(s) | 267 |
| BshTI | ACCGGT | 1 cut(s) | 264 |
| BsiHKAI | GWGCWC | 2 cut(s) | 239, 461 |
| BsiSI | CCGG | 5 cut(s) | 143, 265, 665, 889, 897 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 446 |
| BsmAI | GTCTC | 6 cut(s) | 51, 126, 144, 288, 830, 861 |
| BsmI | GAATGC | 1 cut(s) | 677 |
| BsnI | GGCC | 3 cut(s) | 110, 146, 492 |
| Bso31I | GGTCTC | 1 cut(s) | 830 |
| Bsp1286I | GDGCHC | 4 cut(s) | 228, 239, 272, 461 |
| Bsp143I | GATC | 6 cut(s) | 45, 375, 449, 505, 530, 796 |
| BspACI | CCGC | 1 cut(s) | 73 |
| BspANI | GGCC | 3 cut(s) | 110, 146, 492 |
| BspCNI | CTCAG | 4 cut(s) | 125, 424, 445, 473 |
| BspLI | GGNNCC | 3 cut(s) | 269, 663, 772 |
| BspPI | GGATC | 3 cut(s) | 53, 457, 538 |
| BspT107I | GGYRCC | 1 cut(s) | 267 |
| BspTNI | GGTCTC | 1 cut(s) | 830 |
| BsrDI | GCAATG | 1 cut(s) | 672 |
| BsrFI | RCCGGY | 1 cut(s) | 264 |
| BsrI | ACTGG | 3 cut(s) | 211, 619, 735 |
| BssAI | RCCGGY | 1 cut(s) | 264 |
| BssECI | CCNNGG | 1 cut(s) | 776 |
| BssMI | GATC | 6 cut(s) | 45, 375, 449, 505, 530, 796 |
| Bst2UI | CCWGG | 1 cut(s) | 447 |
| Bst4CI | ACNGT | 1 cut(s) | 611 |
| BstBAI | YACGTR | 1 cut(s) | 788 |
| BstC8I | GCNNGC | 1 cut(s) | 632 |
| BstDEI | CTNAG | 4 cut(s) | 112, 411, 453, 460 |
| BstF5I | GGATG | 3 cut(s) | 13, 97, 597 |
| BstHHI | GCGC | 1 cut(s) | 743 |
| BstKTI | GATC | 6 cut(s) | 48, 378, 452, 508, 533, 799 |
| BstMAI | GTCTC | 6 cut(s) | 51, 126, 144, 288, 830, 861 |
| BstMBI | GATC | 6 cut(s) | 45, 375, 449, 505, 530, 796 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 78, 180, 243, 707, 747, 883 |
| BstNI | CCWGG | 1 cut(s) | 447 |
| BstNSI | RCATGY | 2 cut(s) | 39, 523 |
| BstSCI | CCNGG | 2 cut(s) | 445, 888 |
| BstSLI | GKGCMC | 2 cut(s) | 228, 272 |
| BstV1I | GCAGC | 3 cut(s) | 353, 596, 889 |
| BstX2I | RGATCY | 3 cut(s) | 45, 375, 449 |
| BstYI | RGATCY | 3 cut(s) | 45, 375, 449 |
| BsuRI | GGCC | 3 cut(s) | 110, 146, 492 |
| BtsCI | GGATG | 3 cut(s) | 13, 97, 597 |
| BtsIMutI | CAGTG | 2 cut(s) | 218, 419 |
| Cac8I | GCNNGC | 1 cut(s) | 632 |
| CfoI | GCGC | 1 cut(s) | 743 |
| Cfr10I | RCCGGY | 1 cut(s) | 264 |
| Csp6I | GTAC | 1 cut(s) | 622 |
| CspAI | ACCGGT | 1 cut(s) | 264 |
| CviQI | GTAC | 1 cut(s) | 622 |
| DdeI | CTNAG | 4 cut(s) | 112, 411, 453, 460 |
| DpnI | GATC | 6 cut(s) | 47, 377, 451, 507, 532, 798 |
| DpnII | GATC | 6 cut(s) | 45, 375, 449, 505, 530, 796 |
| DraIII | CACNNNGTG | 1 cut(s) | 234 |
| EaeI | YGGCCR | 2 cut(s) | 144, 490 |
| Eco31I | GGTCTC | 1 cut(s) | 830 |
| EcoRII | CCWGG | 1 cut(s) | 445 |
| FauNDI | CATATG | 1 cut(s) | 745 |
| FblI | GTMKAC | 1 cut(s) | 576 |
| Fnu4HI | GCNGC | 4 cut(s) | 73, 367, 585, 878 |
| FokI | GGATG | 3 cut(s) | 20, 84, 604 |
| Fsp4HI | GCNGC | 4 cut(s) | 73, 367, 585, 878 |
| FspBI | CTAG | 2 cut(s) | 335, 925 |
| GlaI | GCGC | 1 cut(s) | 742 |
| GluI | GCNGC | 4 cut(s) | 73, 367, 585, 878 |
| GsuI | CTGGAG | 1 cut(s) | 752 |
| HaeIII | GGCC | 3 cut(s) | 110, 146, 492 |
| HapII | CCGG | 5 cut(s) | 143, 265, 665, 889, 897 |
| HhaI | GCGC | 1 cut(s) | 743 |
| Hin6I | GCGC | 1 cut(s) | 741 |
| HinP1I | GCGC | 1 cut(s) | 741 |
| HincII | GTYRAC | 1 cut(s) | 517 |
| HindII | GTYRAC | 1 cut(s) | 517 |
| HinfI | GANTC | 3 cut(s) | 59, 329, 562 |
| HpaII | CCGG | 5 cut(s) | 143, 265, 665, 889, 897 |
| HphI | GGTGA | 4 cut(s) | 77, 83, 268, 707 |
| Hpy166II | GTNNAC | 4 cut(s) | 259, 517, 577, 670 |
| Hpy188I | TCNGA | 4 cut(s) | 302, 454, 780, 801 |
| Hpy8I | GTNNAC | 4 cut(s) | 259, 517, 577, 670 |
| Hpy99I | CGWCG | 1 cut(s) | 81 |
| HpyAV | CCTTC | 6 cut(s) | 313, 547, 655, 692, 761, 796 |
| HpyCH4III | ACNGT | 1 cut(s) | 611 |
| HpyCH4IV | ACGT | 1 cut(s) | 787 |
| HpyCH4V | TGCA | 7 cut(s) | 183, 246, 369, 523, 584, 634, 677 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 78, 180, 243, 707, 747, 883 |
| HpyF3I | CTNAG | 4 cut(s) | 112, 411, 453, 460 |
| HpySE526I | ACGT | 1 cut(s) | 787 |
| HspAI | GCGC | 1 cut(s) | 741 |
| Kzo9I | GATC | 6 cut(s) | 45, 375, 449, 505, 530, 796 |
| LmnI | GCTCC | 4 cut(s) | 242, 667, 780, 891 |
| Lsp1109I | GCAGC | 3 cut(s) | 353, 596, 889 |
| LweI | GCATC | 2 cut(s) | 582, 688 |
| MaeI | CTAG | 2 cut(s) | 335, 925 |
| MaeII | ACGT | 1 cut(s) | 787 |
| MaeIII | GTNAC | 5 cut(s) | 330, 416, 611, 722, 839 |
| MalI | GATC | 6 cut(s) | 47, 377, 451, 507, 532, 798 |
| MboI | GATC | 6 cut(s) | 45, 375, 449, 505, 530, 796 |
| MboII | GAAGA | 3 cut(s) | 296, 370, 515 |
| MflI | RGATCY | 3 cut(s) | 45, 375, 449 |
| MhlI | GDGCHC | 4 cut(s) | 228, 239, 272, 461 |
| MlsI | TGGCCA | 1 cut(s) | 492 |
| MluCI | AATT | 3 cut(s) | 248, 433, 716 |
| MluNI | TGGCCA | 1 cut(s) | 492 |
| MlyI | GAGTC | 2 cut(s) | 53, 338 |
| MnlI | CCTC | 8 cut(s) | 46, 121, 246, 400, 565, 700, 727, 786 |
| Mox20I | TGGCCA | 1 cut(s) | 492 |
| MscI | TGGCCA | 1 cut(s) | 492 |
| MseI | TTAA | 3 cut(s) | 399, 555, 606 |
| MslI | CAYNNNNRTG | 1 cut(s) | 549 |
| Msp20I | TGGCCA | 1 cut(s) | 492 |
| MspI | CCGG | 5 cut(s) | 143, 265, 665, 889, 897 |
| MspR9I | CCNGG | 2 cut(s) | 447, 890 |
| Mva1269I | GAATGC | 1 cut(s) | 677 |
| MvaI | CCWGG | 1 cut(s) | 447 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 78, 180, 243, 707, 747, 883 |
| NciI | CCSGG | 1 cut(s) | 890 |
| NdeI | CATATG | 1 cut(s) | 745 |
| NdeII | GATC | 6 cut(s) | 45, 375, 449, 505, 530, 796 |
| NlaIV | GGNNCC | 3 cut(s) | 269, 663, 772 |
| NmuCI | GTSAC | 1 cut(s) | 330 |
| NspI | RCATGY | 2 cut(s) | 39, 523 |
| PciI | ACATGT | 1 cut(s) | 35 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 784 |
| PctI | GAATGC | 1 cut(s) | 677 |
| PfeI | GAWTC | 1 cut(s) | 562 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 446 |
| PfoI | TCCNGGA | 1 cut(s) | 445 |
| PinAI | ACCGGT | 1 cut(s) | 264 |
| PkrI | GCNGC | 4 cut(s) | 74, 368, 586, 879 |
| PleI | GAGTC | 2 cut(s) | 53, 337 |
| PpsI | GAGTC | 2 cut(s) | 53, 337 |
| Ppu21I | YACGTR | 1 cut(s) | 788 |
| PscI | ACATGT | 1 cut(s) | 35 |
| Psp6I | CCWGG | 1 cut(s) | 445 |
| PspGI | CCWGG | 1 cut(s) | 445 |
| PspN4I | GGNNCC | 3 cut(s) | 269, 663, 772 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 340, 372 |
| PsuI | RGATCY | 3 cut(s) | 45, 375, 449 |
| RsaI | GTAC | 1 cut(s) | 623 |
| RsaNI | GTAC | 1 cut(s) | 622 |
| RseI | CAYNNNNRTG | 1 cut(s) | 549 |
| SaqAI | TTAA | 3 cut(s) | 399, 555, 606 |
| SatI | GCNGC | 4 cut(s) | 73, 367, 585, 878 |
| Sau3AI | GATC | 6 cut(s) | 45, 375, 449, 505, 530, 796 |
| ScaI | AGTACT | 1 cut(s) | 623 |
| SchI | GAGTC | 2 cut(s) | 53, 338 |
| ScrFI | CCNGG | 2 cut(s) | 447, 890 |
| SduI | GDGCHC | 4 cut(s) | 228, 239, 272, 461 |
| SfaNI | GCATC | 2 cut(s) | 582, 688 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 549 |
| SmlI | CTYRAG | 1 cut(s) | 881 |
| SmoI | CTYRAG | 1 cut(s) | 881 |
| Sse9I | AATT | 3 cut(s) | 248, 433, 716 |
| SsiI | CCGC | 1 cut(s) | 73 |
| SspMI | CTAG | 2 cut(s) | 335, 925 |
| StyD4I | CCNGG | 2 cut(s) | 445, 888 |
| TaaI | ACNGT | 1 cut(s) | 611 |
| TaiI | ACGT | 1 cut(s) | 790 |
| TaqI | TCGA | 1 cut(s) | 560 |
| TasI | AATT | 3 cut(s) | 248, 433, 716 |
| TatI | WGTACW | 1 cut(s) | 621 |
| TauI | GCSGC | 1 cut(s) | 75 |
| TfiI | GAWTC | 1 cut(s) | 562 |
| Tru1I | TTAA | 3 cut(s) | 399, 555, 606 |
| Tru9I | TTAA | 3 cut(s) | 399, 555, 606 |
| TscAI | CASTG | 2 cut(s) | 218, 419 |
| TseFI | GTSAC | 1 cut(s) | 330 |
| TseI | GCWGC | 3 cut(s) | 366, 584, 877 |
| Tsp45I | GTSAC | 1 cut(s) | 330 |
| TspDTI | ATGAA | 2 cut(s) | 174, 679 |
| TspGWI | ACGGA | 2 cut(s) | 229, 916 |
| TspRI | CASTG | 2 cut(s) | 218, 419 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 446 |
| XapI | RAATTY | 1 cut(s) | 716 |
| XceI | RCATGY | 2 cut(s) | 39, 523 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 218 |
| XmiI | GTMKAC | 1 cut(s) | 576 |
| XspI | CTAG | 2 cut(s) | 335, 925 |
| ZrmI | AGTACT | 1 cut(s) | 623 |