Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009760

Physical Location & Seq

Genomic Coordinates Forward (+)

13883167 .. 13885063

Gene Structure 1897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAGACAGATAGTATGGAGTGCGTCTCATCTACGGGTAATGAGATCCATCAGAATGGTAATGGCCACCAATCTTACCAATTCTCTTCGACGAAGACTCACGGCGGAGCCGCTGCTGCCGCCGTCGTTACCAATATTGTTGGCCCAACAGCAACTGCTCCGGCCACTAGCGTGTATGAGCTTCTGGAGTGCCCTGTCTGTACCTATTCTATGTATCCTCCTATCCATCAGTGTCATAATGGACATACATTGTGCTCGACCTGTAAAGTGAGGGTTCATAACAGGTGTCCCACATGTAGACAAGAACTTGGAGATATTAGATGTTTAGCTCTTGAGAAAGTAGCCGAGTCGCTTGAGCTGCCTTGCAAGTTTTACAATCTGGGATGTCCTGAGATCTTTCCTTACTACAGCAAACTGAAGCACGAGTCTCTCTGTAACTTCAGACCTTACAGTTGTCCTTATGCTGGTTCGGAGTGTGGTATCGTAGGGGACATCCCTTTTCTTGTAGCCCATCTCAGGGATGATCATAAAGTTGACATGCACGCTGGTTCCACTTTTAACCACCGCTATGTCAAATCCAATCCGCGTGAAGTAGAGAACGCTACTTGGATGCTAACCGTATTCCATTGCTTTGGGCAGTACTTCTGCCTCCATTTCGAAGCGTTCCAGCTTGGGATGGGTCCAGTATACATGGCATTCCTGAGATTCATGGGGGACGAGGAAGATGCACGGAGCTACAGCTACAGCTTAGAAGTGGGAGGCAGTGGGAGGAAGCTAACATGGGAAGGAACCCCAAGAAGCATCAGAGATAGCCACAGGAAAGTAAGAGACAGCAACGACGGTCTCATCATCCAAAGAAACATGGCTCTCTTTTTCTCCGGTGGAGACAGGAAAGAGCTTAAACTTAGAGTCACTGGTAAAATCTGGAAAGAGCAACACAGTCCAGATTCTGGACTTTCCATACCAAACCTATCTTCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

327

Amino Acids

36.57

Weight (kDa)

6.75

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	64 - 99	4.9e-12	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	113 - 188	2.1e-29	Sina, zinc finger
Sina_TRAF	PF03145	208 - 305	1.2e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27880 AT5G53360 AT5G53360
fragaria_vesca	FvH4_4g04610 FvH4_5g04860
malus_domestica	MD06G1109400.v1.1 MD14G1130400.v1.1
prunus_persica	Prupe.5G122400_v2.0.a1
pyrus_communis	pycom06g10290
rosa_chinensis	RchiOBHm_Chr7g0194231
rosa_laevigata	RLG00000004208
rosa_multiflora	Rmu_sc0000901.1_g000003 Rmu_sc0009433.1_g000016
rosa_roxburghii	Rroxscaffold_3G00261480
rosa_rugosa	Rorug07G0014500 Rorug07G0014600
rosa_samantha	Rh7AG141900 Rh7BG142300 Rh7CG146000 Rh7DG143300
rosa_wichuraiana	Rw7G012130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	950
AccI	GTMKAC	2 cut(s)	298, 687
AccII	CGCG	1 cut(s)	586
AciI	CCGC	5 cut(s)	105, 111, 120, 565, 584
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	2 cut(s)	64, 162
AcuI	CTGAAG	2 cut(s)	424, 437
AfaI	GTAC	2 cut(s)	202, 641
AfiI	CCNNNNNNNGG	4 cut(s)	464, 516, 517, 950
AflIII	ACRYGT	1 cut(s)	293
AjuI	GAANNNNNNNTTGG	1 cut(s)	958
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	9 cut(s)	181, 329, 358, 670, 735, 741, 747, 775, 898
AluI	AGCT	9 cut(s)	181, 329, 358, 670, 735, 741, 747, 775, 898
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	5 cut(s)	31, 432, 822, 848, 879
AlwI	GGATC	1 cut(s)	40
AlwNI	CAGNNNCTG	2 cut(s)	155, 950
AoxI	GGCC	3 cut(s)	64, 142, 162
ApeKI	GCWGC	3 cut(s)	113, 116, 358
AspS9I	GGNCC	2 cut(s)	143, 680
AsuII	TTCGAA	1 cut(s)	657
AvaII	GGWCC	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	66
BauI	CACGAG	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	100, 103, 345
BccI	CCATC	4 cut(s)	57, 234, 519, 670
BceAI	ACGGC	2 cut(s)	107, 118
BcgI	CGANNNNNNTGC	2 cut(s)	707, 741
BciVI	GTATCC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	5 cut(s)	31, 432, 822, 848, 879
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	3 cut(s)	406, 736, 742
BfuI	GTATCC	1 cut(s)	225
BglII	AGATCT	1 cut(s)	393
BisI	GCNGC	5 cut(s)	111, 114, 117, 120, 359
BlsI	GCNGC	5 cut(s)	112, 115, 118, 121, 360
BmcAI	AGTACT	1 cut(s)	641
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	2 cut(s)	143, 680
BmiI	GGNNCC	4 cut(s)	109, 550, 681, 790
BmsI	GCATC	3 cut(s)	600, 715, 810
BpiI	GAAGAC	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	657
BpuEI	CTTGAG	2 cut(s)	353, 374
BsaI	GGTCTC	1 cut(s)	848
BsaWI	WCCGGW	1 cut(s)	878
Bsc4I	CCNNNNNNNGG	4 cut(s)	464, 516, 517, 950
Bse1I	ACTGG	2 cut(s)	683, 919
Bse3DI	GCAATG	1 cut(s)	625
BseGI	GGATG	6 cut(s)	389, 492, 526, 615, 681, 849
BseLI	CCNNNNNNNGG	4 cut(s)	464, 516, 517, 950
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	3 cut(s)	381, 529, 692
BseNI	ACTGG	2 cut(s)	683, 919
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	100, 103, 345
Bsh1236I	CGCG	1 cut(s)	586
BshFI	GGCC	3 cut(s)	66, 144, 164
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	161, 879
BslFI	GGGAC	3 cut(s)	273, 503, 728
BslI	CCNNNNNNNGG	4 cut(s)	464, 516, 517, 950
BsmAI	GTCTC	5 cut(s)	31, 432, 822, 848, 879
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	3 cut(s)	273, 503, 728
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	3 cut(s)	66, 144, 164
Bso31I	GGTCTC	1 cut(s)	848
Bsp119I	TTCGAA	1 cut(s)	657
Bsp1286I	GDGCHC	2 cut(s)	194, 257
Bsp143I	GATC	3 cut(s)	45, 393, 523
BspACI	CCGC	5 cut(s)	105, 111, 120, 565, 584
BspANI	GGCC	3 cut(s)	66, 144, 164
BspCNI	CTCAG	3 cut(s)	382, 528, 693
BspFNI	CGCG	1 cut(s)	586
BspLI	GGNNCC	4 cut(s)	109, 550, 681, 790
BspPI	GGATC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	657
BspTNI	GGTCTC	1 cut(s)	848
BsrDI	GCAATG	1 cut(s)	625
BsrI	ACTGG	2 cut(s)	683, 919
BssMI	GATC	3 cut(s)	45, 393, 523
BssNAI	GTATAC	1 cut(s)	688
BssSI	CACGAG	1 cut(s)	422
Bst1107I	GTATAC	1 cut(s)	688
Bst2BI	CACGAG	1 cut(s)	422
Bst4CI	ACNGT	4 cut(s)	452, 619, 842, 941
Bst6I	CTCTTC	1 cut(s)	91
BstBI	TTCGAA	1 cut(s)	657
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	5 cut(s)	390, 515, 701, 748, 905
BstF5I	GGATG	6 cut(s)	389, 492, 526, 615, 681, 849
BstFNI	CGCG	1 cut(s)	586
BstKTI	GATC	3 cut(s)	48, 396, 526
BstMAI	GTCTC	5 cut(s)	31, 432, 822, 848, 879
BstMBI	GATC	3 cut(s)	45, 393, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 119, 358
BstNSI	RCATGY	2 cut(s)	297, 541
BstSFI	CTRYAG	3 cut(s)	406, 736, 742
BstSLI	GKGCMC	1 cut(s)	194
BstUI	CGCG	1 cut(s)	586
BstV1I	GCAGC	3 cut(s)	100, 103, 345
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	2 cut(s)	45, 393
BstXI	CCANNNNNNTGG	2 cut(s)	56, 632
BstYI	RGATCY	2 cut(s)	45, 393
BstZ17I	GTATAC	1 cut(s)	688
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	66, 144, 164
BtsCI	GGATG	6 cut(s)	389, 492, 526, 615, 681, 849
BtsI	GCAGTG	1 cut(s)	769
BtsIMutI	CAGTG	3 cut(s)	236, 769, 912
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	2 cut(s)	155, 950
Cfr13I	GGNCC	2 cut(s)	143, 680
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	201, 640
CviAII	CATG	6 cut(s)	294, 538, 691, 709, 780, 862
CviQI	GTAC	2 cut(s)	201, 640
DdeI	CTNAG	5 cut(s)	390, 515, 701, 748, 905
DpnI	GATC	3 cut(s)	47, 395, 525
DpnII	GATC	3 cut(s)	45, 393, 523
EaeI	YGGCCR	2 cut(s)	64, 162
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	848
Eco47I	GGWCC	1 cut(s)	680
Eco57I	CTGAAG	2 cut(s)	424, 437
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	6 cut(s)	297, 541, 694, 712, 783, 865
FaqI	GGGAC	3 cut(s)	273, 503, 728
FatI	CATG	6 cut(s)	293, 537, 690, 708, 779, 861
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	2 cut(s)	298, 687
Fnu4HI	GCNGC	5 cut(s)	111, 114, 117, 120, 359
FokI	GGATG	6 cut(s)	396, 479, 533, 622, 688, 836
Fsp4HI	GCNGC	5 cut(s)	111, 114, 117, 120, 359
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	5 cut(s)	111, 114, 117, 120, 359
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	3 cut(s)	66, 144, 164
HapII	CCGG	2 cut(s)	161, 879
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	6 cut(s)	297, 541, 694, 712, 783, 865
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	6 cut(s)	97, 347, 425, 705, 909, 947
HpaII	CCGG	2 cut(s)	161, 879
Hpy166II	GTNNAC	3 cut(s)	299, 535, 688
Hpy188I	TCNGA	4 cut(s)	54, 443, 472, 806
Hpy188III	TCNNGA	8 cut(s)	185, 332, 389, 700, 925, 944, 951, 981
Hpy8I	GTNNAC	3 cut(s)	299, 535, 688
Hpy99I	CGWCG	3 cut(s)	94, 128, 842
HpyAV	CCTTC	1 cut(s)	779
HpyCH4III	ACNGT	4 cut(s)	452, 619, 842, 941
HpyCH4V	TGCA	3 cut(s)	366, 541, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 119, 358
HpyF3I	CTNAG	5 cut(s)	390, 515, 701, 748, 905
Hsp92II	CATG	6 cut(s)	297, 541, 694, 712, 783, 865
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	45, 393, 523
LmnI	GCTCC	3 cut(s)	107, 163, 732
Lsp1109I	GCAGC	3 cut(s)	100, 103, 345
LweI	GCATC	3 cut(s)	600, 715, 810
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	3 cut(s)	127, 434, 910
MalI	GATC	3 cut(s)	47, 395, 525
MboI	GATC	3 cut(s)	45, 393, 523
MboII	GAAGA	5 cut(s)	78, 106, 734, 966, 969
MflI	RGATCY	2 cut(s)	45, 393
MhlI	GDGCHC	2 cut(s)	194, 257
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	1 cut(s)	80
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	4 cut(s)	91, 356, 434, 918
MnlI	CCTC	6 cut(s)	228, 264, 659, 712, 752, 762
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	2 cut(s)	558, 900
MslI	CAYNNNNRTG	3 cut(s)	54, 170, 567
Msp20I	TGGCCA	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	2 cut(s)	161, 879
Mva1269I	GAATGC	1 cut(s)	695
MvnI	CGCG	1 cut(s)	586
MwoI	GCNNNNNNNGC	3 cut(s)	116, 119, 358
NdeII	GATC	3 cut(s)	45, 393, 523
NlaIII	CATG	6 cut(s)	297, 541, 694, 712, 783, 865
NlaIV	GGNNCC	4 cut(s)	109, 550, 681, 790
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	910
NspI	RCATGY	2 cut(s)	297, 541
NspV	TTCGAA	1 cut(s)	657
OliI	CACNNNNGTG	1 cut(s)	170
PciI	ACATGT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	2 cut(s)	705, 947
PflMI	CCANNNNNTGG	1 cut(s)	950
PkrI	GCNGC	5 cut(s)	112, 115, 118, 121, 360
PleI	GAGTC	4 cut(s)	91, 355, 433, 917
PpsI	GAGTC	4 cut(s)	91, 355, 433, 917
PscI	ACATGT	1 cut(s)	293
PspN4I	GGNNCC	4 cut(s)	109, 550, 681, 790
PspPI	GGNCC	2 cut(s)	143, 680
PstNI	CAGNNNCTG	2 cut(s)	155, 950
PsuI	RGATCY	2 cut(s)	45, 393
RsaI	GTAC	2 cut(s)	202, 641
RsaNI	GTAC	2 cut(s)	201, 640
RseI	CAYNNNNRTG	3 cut(s)	54, 170, 567
SaqAI	TTAA	2 cut(s)	558, 900
SatI	GCNGC	5 cut(s)	111, 114, 117, 120, 359
Sau3AI	GATC	3 cut(s)	45, 393, 523
Sau96I	GGNCC	2 cut(s)	143, 680
ScaI	AGTACT	1 cut(s)	641
SchI	GAGTC	4 cut(s)	91, 356, 434, 918
SduI	GDGCHC	2 cut(s)	194, 257
SfaNI	GCATC	3 cut(s)	600, 715, 810
SfcI	CTRYAG	3 cut(s)	406, 736, 742
SfuI	TTCGAA	1 cut(s)	657
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	3 cut(s)	54, 170, 567
SmlI	CTYRAG	2 cut(s)	332, 353
SmoI	CTYRAG	2 cut(s)	332, 353
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	5 cut(s)	105, 111, 120, 565, 584
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	1 cut(s)	168
TaaI	ACNGT	4 cut(s)	452, 619, 842, 941
TaqI	TCGA	3 cut(s)	89, 257, 657
TasI	AATT	1 cut(s)	80
TatI	WGTACW	1 cut(s)	639
TauI	GCSGC	2 cut(s)	113, 122
TfiI	GAWTC	2 cut(s)	705, 947
Tru1I	TTAA	2 cut(s)	558, 900
Tru9I	TTAA	2 cut(s)	558, 900
TscAI	CASTG	3 cut(s)	236, 769, 919
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	3 cut(s)	113, 116, 358
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	2 cut(s)	266, 697
TspGWI	ACGGA	1 cut(s)	745
TspRI	CASTG	3 cut(s)	236, 769, 919
Van91I	CCANNNNNTGG	1 cut(s)	950
VpaK11BI	GGWCC	1 cut(s)	680
XceI	RCATGY	2 cut(s)	297, 541
XmiI	GTMKAC	2 cut(s)	298, 687
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.