Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009760

Physical Location & Seq

Genomic Coordinates Reverse (-)

24892232 .. 24897122

Gene Structure 4891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1109400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGGAGGACTGTTTTGTTGATAGTTTGACAACATGTGATGGGATCCATGGACGAGGAGACACTCATCACCGCCGCAGACGCCCTCGCCACCACCGCCGCCGTTTCTCGGCACCGGCCAAGTCCAACAACAGAGCACCGAGTCCAGTCACAAAAGTTCATGAGCTTCTTGAATGCCCTCTCTGTTCAAAGTCCATGTTCCCACCAATACACCAGTGCCCAAACGGGCACACTCTGTGCTCAATCTGCAAACTGACGGTGAACCGGTGCCCGACTTGTCGAGAAAAACTCGGCGACATCCGATGTCTAGCATTGGAGAAGGTGGCAGAATCACTAGAACTGCCTTGCAAGTATTGCTCTTTGGGGTGCATGGAGATCCTCCCTTACTACATCAAACTCAGGCATGAGGGTCACTGCTACTTCAGACCATACAGTTGCCCTTATCCTGGATCTGATGAGTGCTCAGAGGTTGGGGATGTTCCATTTTTGGTTGACCATCTGAGAGAAGATCACAAGGTTGACTTGCACATTGGTTCAACGTTTAATCACCTCTATGTTAAGTCGAATCGCCGCGAAGTAGAGTGTGCAGCAAGGATGCTTATGGTTTTCAACTGTTACAACCAGTACTTCTGTCTGCACTTTGAAGCCTTCCACCTCGGCATAGCTCCGGTTTTCATTGCATTCCTTCGCTTCATGGGCGATGCGGCTGAGGCACGAAGCTTCAGCTACAGACTGGAGGTGGGCAGCAACAGCAGGAAACTAATATGGGAAGGAACCCCTCGGAGCATCTGTGACAGCCATCAGAAGGTCAGGGACAGCCATGACGGTCTCATAGTCCAGCGTAACATGGCACTTTTTTTCTCCGGTGGAGATGGAAAGGAGCTCAAGCTTCGGATCTCCGGACGGATTTGGAAGGACAACAGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

310

Amino Acids

35.45

Weight (kDa)

8.55

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	59 - 93	1.4e-11	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	107 - 183	6.1e-25	Sina, zinc finger
Sina_TRAF	PF03145	203 - 299	1.3e-31	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27880 AT5G53360 AT5G53360
fragaria_vesca	FvH4_4g04610 FvH4_5g04860
malus_domestica	MD06G1109400.v1.1 MD14G1130400.v1.1
prunus_persica	Prupe.5G122400_v2.0.a1
pyrus_communis	pycom06g10290
rosa_chinensis	RchiOBHm_Chr7g0194231
rosa_laevigata	RLG00000004208
rosa_multiflora	Rmu_sc0000901.1_g000003 Rmu_sc0009433.1_g000016
rosa_roxburghii	Rroxscaffold_3G00261480
rosa_rugosa	Rorug07G0014500 Rorug07G0014600
rosa_samantha	Rh7AG141900 Rh7BG142300 Rh7CG146000 Rh7DG143300
rosa_wichuraiana	Rw7G012130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	112, 267
AccII	CGCG	1 cut(s)	573
AccIII	TCCGGA	1 cut(s)	899
AciI	CCGC	6 cut(s)	73, 76, 97, 100, 571, 704
AclI	AACGTT	1 cut(s)	539
AclWI	GGATC	5 cut(s)	40, 53, 370, 457, 902
AcoI	YGGCCR	1 cut(s)	117
AcuI	CTGAAG	2 cut(s)	406, 706
AcyI	GRCGYC	1 cut(s)	82
AdeI	CACNNNGTG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	3 cut(s)	109, 446, 805
AflIII	ACRYGT	1 cut(s)	35
AgeI	ACCGGT	1 cut(s)	264
AgsI	TTSAA	5 cut(s)	173, 189, 537, 610, 644
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	6 cut(s)	166, 665, 720, 726, 883, 889
AluI	AGCT	6 cut(s)	166, 665, 720, 726, 883, 889
Alw21I	GWGCWC	4 cut(s)	139, 242, 464, 885
Alw26I	GTCTC	2 cut(s)	54, 833
AlwI	GGATC	5 cut(s)	40, 53, 370, 457, 902
Aor13HI	TCCGGA	1 cut(s)	899
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	587, 744
AsiGI	ACCGGT	1 cut(s)	264
AsuHPI	GGTGA	3 cut(s)	62, 271, 539
BaeGI	GKGCMC	3 cut(s)	221, 231, 272
BamHI	GGATCC	1 cut(s)	45
BanI	GGYRCC	2 cut(s)	112, 267
BanII	GRGCYC	1 cut(s)	885
Bbv12I	GWGCWC	4 cut(s)	139, 242, 464, 885
BbvCI	CCTCAGC	1 cut(s)	708
BbvI	GCAGC	2 cut(s)	599, 756
BccI	CCATC	4 cut(s)	35, 504, 807, 866
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	447
BcoDI	GTCTC	2 cut(s)	54, 833
BfaI	CTAG	3 cut(s)	308, 335, 928
BfmI	CTRYAG	1 cut(s)	727
BisI	GCNGC	6 cut(s)	76, 100, 571, 588, 705, 745
BlsI	GCNGC	6 cut(s)	77, 101, 572, 589, 706, 746
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	1 cut(s)	447
BmiI	GGNNCC	4 cut(s)	47, 114, 269, 775
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	3 cut(s)	585, 691, 795
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	755
Bpu10I	CCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	869
BsaHI	GRCGYC	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	3 cut(s)	49, 655, 779
BsaWI	WCCGGW	4 cut(s)	264, 667, 863, 899
BsaXI	ACNNNNNCTCC	2 cut(s)	775, 805
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 446, 805
Bse118I	RCCGGY	2 cut(s)	115, 264
Bse1I	ACTGG	4 cut(s)	146, 214, 622, 738
Bse3DI	GCAATG	1 cut(s)	675
BseAI	TCCGGA	1 cut(s)	899
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	3 cut(s)	49, 655, 779
BseGI	GGATG	3 cut(s)	297, 481, 600
BseLI	CCNNNNNNNGG	3 cut(s)	109, 446, 805
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	4 cut(s)	412, 477, 491, 699
BseNI	ACTGG	4 cut(s)	146, 214, 622, 738
BseRI	GAGGAG	2 cut(s)	20, 72
BseSI	GKGCMC	3 cut(s)	221, 231, 272
BseXI	GCAGC	2 cut(s)	599, 756
BsgI	GTGCAG	2 cut(s)	606, 620
Bsh1236I	CGCG	1 cut(s)	573
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	2 cut(s)	112, 267
BshTI	ACCGGT	1 cut(s)	264
BsiHKAI	GWGCWC	4 cut(s)	139, 242, 464, 885
BsiSI	CCGG	5 cut(s)	116, 265, 668, 864, 900
BslFI	GGGAC	1 cut(s)	827
BslI	CCNNNNNNNGG	3 cut(s)	109, 446, 805
BsmAI	GTCTC	2 cut(s)	54, 833
BsmFI	GGGAC	1 cut(s)	827
BsmI	GAATGC	2 cut(s)	179, 680
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	833
Bsp1286I	GDGCHC	7 cut(s)	139, 221, 231, 242, 272, 464, 885
Bsp13I	TCCGGA	1 cut(s)	899
Bsp143I	GATC	5 cut(s)	45, 375, 449, 508, 894
Bsp19I	CCATGG	1 cut(s)	49
BspACI	CCGC	6 cut(s)	73, 76, 97, 100, 571, 704
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	4 cut(s)	411, 476, 492, 700
BspEI	TCCGGA	1 cut(s)	899
BspFNI	CGCG	1 cut(s)	573
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	4 cut(s)	47, 114, 269, 775
BspPI	GGATC	5 cut(s)	40, 53, 370, 457, 902
BspT107I	GGYRCC	2 cut(s)	112, 267
BspTNI	GGTCTC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	675
BsrFI	RCCGGY	2 cut(s)	115, 264
BsrI	ACTGG	4 cut(s)	146, 214, 622, 738
BssAI	RCCGGY	2 cut(s)	115, 264
BssECI	CCNNGG	3 cut(s)	49, 655, 779
BssMI	GATC	5 cut(s)	45, 375, 449, 508, 894
BssNI	GRCGYC	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	6 cut(s)	14, 259, 434, 614, 827, 923
BstACI	GRCGYC	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstDEI	CTNAG	4 cut(s)	398, 463, 500, 708
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	3 cut(s)	297, 481, 600
BstFNI	CGCG	1 cut(s)	573
BstKTI	GATC	5 cut(s)	48, 378, 452, 511, 897
BstMAI	GTCTC	2 cut(s)	54, 833
BstMBI	GATC	5 cut(s)	45, 375, 449, 508, 894
BstMWI	GCNNNNNNNGC	7 cut(s)	81, 96, 246, 354, 696, 710, 750
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	727
BstSLI	GKGCMC	3 cut(s)	221, 231, 272
BstUI	CGCG	1 cut(s)	573
BstV1I	GCAGC	2 cut(s)	599, 756
BstX2I	RGATCY	4 cut(s)	45, 375, 449, 894
BstYI	RGATCY	4 cut(s)	45, 375, 449, 894
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	49
BtgZI	GCGATG	1 cut(s)	714
BtsCI	GGATG	3 cut(s)	297, 481, 600
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	3 cut(s)	221, 412, 928
CciI	TCATGA	1 cut(s)	160
Cfr10I	RCCGGY	2 cut(s)	115, 264
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	625
CspAI	ACCGGT	1 cut(s)	264
CviAII	CATG	9 cut(s)	36, 50, 161, 196, 370, 404, 694, 821, 847
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	4 cut(s)	398, 463, 500, 708
DpnI	GATC	5 cut(s)	47, 377, 451, 510, 896
DpnII	GATC	5 cut(s)	45, 375, 449, 508, 894
DraIII	CACNNNGTG	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	883
Eco130I	CCWWGG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	885
Eco31I	GGTCTC	1 cut(s)	833
Eco53kI	GAGCTC	1 cut(s)	883
Eco57I	CTGAAG	2 cut(s)	406, 706
EcoICRI	GAGCTC	1 cut(s)	883
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	885
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	9 cut(s)	39, 53, 164, 199, 373, 407, 697, 824, 850
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	1 cut(s)	827
FatI	CATG	9 cut(s)	35, 49, 160, 195, 369, 403, 693, 820, 846
Fnu4HI	GCNGC	6 cut(s)	76, 100, 571, 588, 705, 745
FokI	GGATG	3 cut(s)	284, 488, 607
FriOI	GRGCYC	1 cut(s)	885
Fsp4HI	GCNGC	6 cut(s)	76, 100, 571, 588, 705, 745
FspBI	CTAG	3 cut(s)	308, 335, 928
GluI	GCNGC	6 cut(s)	76, 100, 571, 588, 705, 745
GsuI	CTGGAG	1 cut(s)	755
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	5 cut(s)	116, 265, 668, 864, 900
HgaI	GACGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	9 cut(s)	39, 53, 164, 199, 373, 407, 697, 824, 850
HincII	GTYRAC	2 cut(s)	493, 520
HindII	GTYRAC	2 cut(s)	493, 520
HindIII	AAGCTT	2 cut(s)	718, 887
HinfI	GANTC	3 cut(s)	142, 329, 565
HpaII	CCGG	5 cut(s)	116, 265, 668, 864, 900
HphI	GGTGA	3 cut(s)	62, 271, 539
Hpy166II	GTNNAC	3 cut(s)	262, 493, 520
Hpy188I	TCNGA	8 cut(s)	302, 425, 454, 466, 501, 783, 804, 894
Hpy188III	TCNNGA	4 cut(s)	161, 170, 281, 900
Hpy8I	GTNNAC	3 cut(s)	262, 493, 520
HpyAV	CCTTC	6 cut(s)	313, 658, 695, 764, 799, 907
HpyCH4III	ACNGT	6 cut(s)	14, 259, 434, 614, 827, 923
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	7 cut(s)	249, 348, 369, 526, 587, 637, 680
HpyF10VI	GCNNNNNNNGC	7 cut(s)	81, 96, 246, 354, 696, 710, 750
HpyF3I	CTNAG	4 cut(s)	398, 463, 500, 708
HpySE526I	ACGT	1 cut(s)	539
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	9 cut(s)	39, 53, 164, 199, 373, 407, 697, 824, 850
Kpn2I	TCCGGA	1 cut(s)	899
Kzo9I	GATC	5 cut(s)	45, 375, 449, 508, 894
LmnI	GCTCC	3 cut(s)	670, 783, 880
Lsp1109I	GCAGC	2 cut(s)	599, 756
LweI	GCATC	3 cut(s)	585, 691, 795
MaeI	CTAG	3 cut(s)	308, 335, 928
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	5 cut(s)	148, 410, 614, 791, 842
MalI	GATC	5 cut(s)	47, 377, 451, 510, 896
MboI	GATC	5 cut(s)	45, 375, 449, 508, 894
MboII	GAAGA	1 cut(s)	518
MflI	RGATCY	4 cut(s)	45, 375, 449, 894
MhlI	GDGCHC	7 cut(s)	139, 221, 231, 242, 272, 464, 885
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	150
MroI	TCCGGA	1 cut(s)	899
MseI	TTAA	2 cut(s)	543, 558
MslI	CAYNNNNRTG	1 cut(s)	552
MspI	CCGG	5 cut(s)	116, 265, 668, 864, 900
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	2 cut(s)	179, 680
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	7 cut(s)	81, 96, 246, 354, 696, 710, 750
NcoI	CCATGG	1 cut(s)	49
NdeII	GATC	5 cut(s)	45, 375, 449, 508, 894
NlaIII	CATG	9 cut(s)	39, 53, 164, 199, 373, 407, 697, 824, 850
NlaIV	GGNNCC	4 cut(s)	47, 114, 269, 775
NmeAIII	GCCGAG	3 cut(s)	89, 270, 636
NmuCI	GTSAC	3 cut(s)	148, 410, 791
NspI	RCATGY	1 cut(s)	39
PagI	TCATGA	1 cut(s)	160
PciI	ACATGT	1 cut(s)	35
PctI	GAATGC	2 cut(s)	179, 680
PfeI	GAWTC	2 cut(s)	329, 565
PfoI	TCCNGGA	1 cut(s)	445
PinAI	ACCGGT	1 cut(s)	264
PkrI	GCNGC	6 cut(s)	77, 101, 572, 589, 706, 746
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PscI	ACATGT	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	885
Psp1406I	AACGTT	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	4 cut(s)	47, 114, 269, 775
PsuI	RGATCY	4 cut(s)	45, 375, 449, 894
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	552
SacI	GAGCTC	1 cut(s)	885
SaqAI	TTAA	2 cut(s)	543, 558
SatI	GCNGC	6 cut(s)	76, 100, 571, 588, 705, 745
Sau3AI	GATC	5 cut(s)	45, 375, 449, 508, 894
ScaI	AGTACT	1 cut(s)	626
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	7 cut(s)	139, 221, 231, 242, 272, 464, 885
SfaNI	GCATC	3 cut(s)	585, 691, 795
SfcI	CTRYAG	1 cut(s)	727
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
SsiI	CCGC	6 cut(s)	73, 76, 97, 100, 571, 704
SspMI	CTAG	3 cut(s)	308, 335, 928
SstI	GAGCTC	1 cut(s)	885
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	6 cut(s)	14, 259, 434, 614, 827, 923
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	2 cut(s)	280, 563
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	4 cut(s)	78, 102, 573, 707
TfiI	GAWTC	2 cut(s)	329, 565
Tru1I	TTAA	2 cut(s)	543, 558
Tru9I	TTAA	2 cut(s)	543, 558
TscAI	CASTG	3 cut(s)	221, 419, 928
TseFI	GTSAC	3 cut(s)	148, 410, 791
TseI	GCWGC	2 cut(s)	587, 744
Tsp45I	GTSAC	3 cut(s)	148, 410, 791
TspDTI	ATGAA	3 cut(s)	149, 664, 682
TspGWI	ACGGA	1 cut(s)	919
TspRI	CASTG	3 cut(s)	221, 419, 928
XceI	RCATGY	1 cut(s)	39
XspI	CTAG	3 cut(s)	308, 335, 928
ZrmI	AGTACT	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.